BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.1
(1225 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedl... 131 6e-029
gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA li... 121 6e-026
gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA li... 121 6e-026
gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA li... 113 1e-023
gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA li... 111 6e-023
gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, dro... 107 9e-022
gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA li... 105 3e-021
gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. v... 103 1e-020
gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. v... 96 3e-018
gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedl... 90 2e-016
gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA li... 86 3e-015
gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA li... 86 3e-015
gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedl... 82 5e-014
gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedl... 82 5e-014
gb|BE559172.3|BE559172 HV_CEb0023M17f Hordeum vulgare seedl... 80 2e-013
gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day ger... 78 8e-013
gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day ger... 78 8e-013
gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day ger... 78 8e-013
gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day ger... 74 1e-011
gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedl... 72 5e-011
gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subs... 70 2e-010
gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subs... 70 2e-010
gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike... 66 3e-009
gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DA... 66 3e-009
gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedl... 66 3e-009
gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, dro... 64 1e-008
gb|BF627814.2|BF627814 HVSMEb0005N23f Hordeum vulgare seedl... 60 2e-007
gb|BE213990.1|BE213990 HV_CEb0001N13f Hordeum vulgare seedl... 60 2e-007
gb|BE558718.1|BE558718 HV_CEb0020C16f Hordeum vulgare seedl... 60 2e-007
gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedl... 60 2e-007
gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedl... 60 2e-007
gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA li... 60 2e-007
gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA li... 60 2e-007
gb|BF623642.2|BF623642 HVSMEa0003E14f Hordeum vulgare seedl... 58 7e-007
gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedl... 58 7e-007
gb|BG300488.1|BG300488 HVSMEb0017D20f Hordeum vulgare seedl... 58 7e-007
gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA li... 58 7e-007
gb|BM097408.2|BM097408 EBem07_SQ001_P19_R embryo, 28 DPA, n... 58 7e-007
gb|BM369392.2|BM369392 EBem07_SQ003_H07_R embryo, 28 DPA, n... 58 7e-007
gb|BM369656.2|BM369656 EBem07_SQ004_D22_R embryo, 28 DPA, n... 58 7e-007
gb|BM369786.2|BM369786 EBem07_SQ004_J18_R embryo, 28 DPA, n... 58 7e-007
gb|BM368400.2|BM368400 EBem08_SQ002_B18_R embryo, 40 DPA, n... 58 7e-007
gb|BQ765750.1|BQ765750 EBro03_SQ008_F04_R root, 3 week, wat... 58 7e-007
gb|BE216858.2|BE216858 HV_CEb0011N12f Hordeum vulgare seedl... 56 3e-006
gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DA... 52 4e-005
gb|BI948276.1|BI948276 HVSMEl0008N14f Hordeum vulgare spike... 52 4e-005
gb|BI949350.1|BI949350 HVSMEl0013H11f Hordeum vulgare spike... 52 4e-005
gb|BI949605.1|BI949605 HVSMEl0014O01f Hordeum vulgare spike... 52 4e-005
gb|BI954237.1|BI954237 HVSMEm0016M07f Hordeum vulgare green... 52 4e-005
gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedl... 52 4e-005
gb|CA028432.1|CA028432 HZ61P07r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|BM443649.2|BM443649 EBem09_SQ001_A19_R embryo, 1 Day ger... 50 2e-004
gb|BM445101.2|BM445101 EBem09_SQ007_G24_R embryo, 1 Day ger... 50 2e-004
gb|BM445279.2|BM445279 EBem09_SQ007_P07_R embryo, 1 Day ger... 50 2e-004
gb|BQ756597.1|BQ756597 EBem09_SQ003_D03_R embryo, 1 Day ger... 50 2e-004
gb|BE411224.1|BE411224 ISC003.D02F990524 ITEC ISC Barley Le... 46 0.003
gb|BE411672.1|BE411672 ISC008.A09F990802 ITEC ISC Barley Le... 46 0.003
gb|BE422349.1|BE422349 HWM023cB.11r ITEC HWM Barley Leaf Li... 46 0.003
gb|BF259800.2|BF259800 HVSMEf0020E19f Hordeum vulgare seedl... 46 0.003
gb|BE214536.1|BE214536 HV_CEb0003L19f Hordeum vulgare seedl... 46 0.003
gb|BF064981.3|BF064981 HV_CEb0022E17f Hordeum vulgare seedl... 46 0.003
gb|AV926184.1|AV926184 AV926184 K. Sato unpublished cDNA li... 46 0.003
gb|AV926193.1|AV926193 AV926193 K. Sato unpublished cDNA li... 46 0.003
gb|AV926194.1|AV926194 AV926194 K. Sato unpublished cDNA li... 46 0.003
gb|AV931065.1|AV931065 AV931065 K. Sato unpublished cDNA li... 46 0.003
gb|AV933330.1|AV933330 AV933330 K. Sato unpublished cDNA li... 46 0.003
gb|AV933371.1|AV933371 AV933371 K. Sato unpublished cDNA li... 46 0.003
gb|AV933383.1|AV933383 AV933383 K. Sato unpublished cDNA li... 46 0.003
gb|AV935770.1|AV935770 AV935770 K. Sato unpublished cDNA li... 46 0.003
gb|AV935813.1|AV935813 AV935813 K. Sato unpublished cDNA li... 46 0.003
gb|AV935825.1|AV935825 AV935825 K. Sato unpublished cDNA li... 46 0.003
gb|BJ469713.1|BJ469713 BJ469713 K. Sato unpublished cDNA li... 46 0.003
gb|BJ476805.1|BJ476805 BJ476805 K. Sato unpublished cDNA li... 46 0.003
gb|BQ659497.1|BQ659497 HE01J14u HE Hordeum vulgare subsp. v... 46 0.003
gb|BM372933.2|BM372933 EBma04_SQ002_H02_R maternal, 10 DPA,... 46 0.003
gb|CA022080.1|CA022080 HZ42B20r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CA026694.1|CA026694 HZ56K16r HZ Hordeum vulgare subsp. v... 46 0.003
gb|CB858429.1|CB858429 HI06P17w HI Hordeum vulgare subsp. v... 46 0.003
gb|CB877034.1|CB877034 HP03F07T HP Hordeum vulgare subsp. v... 46 0.003
gb|CB879697.1|CB879697 HP03F07w HP Hordeum vulgare subsp. v... 46 0.003
gb|CD663592.1|CD663592 UCRHV18_06aa04_b1 Drought-stressed D... 46 0.003
gb|BF621706.2|BF621706 HVSMEa0011P10f Hordeum vulgare seedl... 44 0.011
gb|BE193661.2|BE193661 HVSMEh0082C02f Hordeum vulgare 5-45 ... 44 0.011
gb|BG365763.1|BG365763 HVSMEi0004B22f Hordeum vulgare 20 DA... 44 0.011
gb|BG366186.1|BG366186 HVSMEi0006C19f Hordeum vulgare 20 DA... 44 0.011
gb|BG368849.1|BG368849 HVSMEi0020O23f Hordeum vulgare 20 DA... 44 0.011
gb|BI947443.1|BI947443 HVSMEl0005H24f Hordeum vulgare spike... 44 0.011
gb|BI949249.1|BI949249 HVSMEl0013A02f Hordeum vulgare spike... 44 0.011
gb|BI950473.1|BI950473 HVSMEl0020N22f Hordeum vulgare spike... 44 0.011
gb|BI950475.1|BI950475 HVSMEl0020N24f Hordeum vulgare spike... 44 0.011
gb|BI951414.1|BI951414 HVSMEl0025N19f Hordeum vulgare spike... 44 0.011
gb|BI951463.1|BI951463 HVSMEm0001A11f Hordeum vulgare green... 44 0.011
gb|BI952917.1|BI952917 HVSMEm0008F23f Hordeum vulgare green... 44 0.011
gb|BI953201.1|BI953201 HVSMEm0011K01f Hordeum vulgare green... 44 0.011
gb|BI953910.1|BI953910 HVSMEm0015F08f Hordeum vulgare green... 44 0.011
gb|BI954227.1|BI954227 HVSMEm0016L11f Hordeum vulgare green... 44 0.011
gb|BI955596.1|BI955596 HVSMEm0023L14f Hordeum vulgare green... 44 0.011
gb|BI955638.1|BI955638 HVSMEm0023N21f Hordeum vulgare green... 44 0.011
gb|BI955968.1|BI955968 HVSMEm0025D17f Hordeum vulgare green... 44 0.011
gb|BE214283.1|BE214283 HV_CEb0003A01f Hordeum vulgare seedl... 44 0.011
gb|BE216024.1|BE216024 HV_CEb0009C12f Hordeum vulgare seedl... 44 0.011
gb|BE559371.1|BE559371 HV_CEb0024F08f Hordeum vulgare seedl... 44 0.011
gb|BF064990.1|BF064990 HV_CEb0022F13f Hordeum vulgare seedl... 44 0.011
gb|BF065067.1|BF065067 HV_CEb0022N01f Hordeum vulgare seedl... 44 0.011
gb|BF066058.1|BF066058 HV_CEb0014L16f Hordeum vulgare seedl... 44 0.011
gb|BF265236.1|BF265236 HV_CEa0011O17f Hordeum vulgare seedl... 44 0.011
gb|BF265978.2|BF265978 HV_CEa0013N09f Hordeum vulgare seedl... 44 0.011
gb|BF266125.2|BF266125 HV_CEa0014D24f Hordeum vulgare seedl... 44 0.011
gb|BE214577.2|BE214577 HV_CEb0003N19f Hordeum vulgare seedl... 44 0.011
gb|BF065377.2|BF065377 HV_CEb0012E08f Hordeum vulgare seedl... 44 0.011
gb|BF065694.2|BF065694 HV_CEb0013H08f Hordeum vulgare seedl... 44 0.011
gb|BG368270.2|BG368270 HVSMEi0017F02f Hordeum vulgare 20 DA... 44 0.011
gb|BE215473.3|BE215473 HV_CEb0006O09f Hordeum vulgare seedl... 44 0.011
gb|BF065825.3|BF065825 HV_CEb0014B14f Hordeum vulgare seedl... 44 0.011
gb|BE559387.2|BE559387 HV_CEb0024H02f Hordeum vulgare seedl... 44 0.011
gb|AV924171.1|AV924171 AV924171 K. Sato unpublished cDNA li... 44 0.011
gb|AV925874.1|AV925874 AV925874 K. Sato unpublished cDNA li... 44 0.011
gb|BM444141.1|BM444141 EBem09_SQ004_E15_R embryo, 1 Day ger... 44 0.011
gb|BI780166.2|BI780166 EBma08_SQ001_J11_R maternal, 28 DPA,... 44 0.011
gb|BM097181.2|BM097181 EBpi07_SQ002_K16_R pistil, 12 DPA, n... 44 0.011
gb|CA003742.1|CA003742 HS15G18r HS Hordeum vulgare subsp. v... 44 0.011
gb|CA019311.1|CA019311 HV11J14r HV Hordeum vulgare subsp. v... 44 0.011
gb|BJ543978.1|BJ543978 BJ543978 K. Sato unpublished cDNA li... 44 0.011
gb|BJ544278.1|BJ544278 BJ544278 K. Sato unpublished cDNA li... 44 0.011
gb|BJ544300.1|BJ544300 BJ544300 K. Sato unpublished cDNA li... 44 0.011
gb|BJ544690.1|BJ544690 BJ544690 K. Sato unpublished cDNA li... 44 0.011
gb|BJ544774.1|BJ544774 BJ544774 K. Sato unpublished cDNA li... 44 0.011
gb|BJ544954.1|BJ544954 BJ544954 K. Sato unpublished cDNA li... 44 0.011
gb|BJ545180.1|BJ545180 BJ545180 K. Sato unpublished cDNA li... 44 0.011
gb|BJ546437.1|BJ546437 BJ546437 K. Sato unpublished cDNA li... 44 0.011
gb|BJ546657.1|BJ546657 BJ546657 K. Sato unpublished cDNA li... 44 0.011
gb|CB878161.1|CB878161 HP07J01T HP Hordeum vulgare subsp. v... 44 0.011
emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase... 44 0.011
emb|X78671.1|HVCHT2A H.vulgare mRNA for chitinase 2a 44 0.011
emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b 44 0.011
gb|BF622695.2|BF622695 HVSMEa0007O13f Hordeum vulgare seedl... 42 0.043
gb|BF628657.2|BF628657 HVSMEb0006P01f Hordeum vulgare seedl... 42 0.043
gb|BI947731.1|BI947731 HVSMEl0006K11f Hordeum vulgare spike... 42 0.043
gb|BF262973.2|BF262973 HV_CEa0005H11f Hordeum vulgare seedl... 42 0.043
gb|AL499683.1|AL499683 AL499683 Hordeum vulgare Barke etiol... 40 0.17
gb|AL500402.1|AL500402 AL500402 Hordeum vulgare Barke etiol... 40 0.17
gb|BF624146.2|BF624146 HVSMEa0012B06f Hordeum vulgare seedl... 40 0.17
gb|BF628273.2|BF628273 HVSMEb0003J13f Hordeum vulgare seedl... 40 0.17
gb|BF618044.2|BF618044 HVSMEc0003G16f Hordeum vulgare seedl... 40 0.17
gb|BF618924.2|BF618924 HVSMEc0008L15f Hordeum vulgare seedl... 40 0.17
gb|BF619746.2|BF619746 HVSMEc0009B09f Hordeum vulgare seedl... 40 0.17
gb|BF620099.2|BF620099 HVSMEc0011P11f Hordeum vulgare seedl... 40 0.17
gb|BG365887.1|BG365887 HVSMEi0004K07f Hordeum vulgare 20 DA... 40 0.17
gb|BG368322.1|BG368322 HVSMEi0017L06f Hordeum vulgare 20 DA... 40 0.17
gb|BI948372.1|BI948372 HVSMEl0009E13f Hordeum vulgare spike... 40 0.17
gb|BF618914.3|BF618914 HVSMEc0008L05f Hordeum vulgare seedl... 40 0.17
gb|BE455567.3|BE455567 HVSMEg0017N15f Hordeum vulgare pre-a... 40 0.17
gb|BE195244.3|BE195244 HVSMEh0088K24f Hordeum vulgare 5-45 ... 40 0.17
gb|BE196188.3|BE196188 HVSMEh0091J17f Hordeum vulgare 5-45 ... 40 0.17
gb|BE602548.3|BE602548 HVSMEh0099N16f Hordeum vulgare 5-45 ... 40 0.17
gb|BG365415.2|BG365415 HVSMEi0002J15f Hordeum vulgare 20 DA... 40 0.17
gb|BG365857.2|BG365857 HVSMEi0004I09f Hordeum vulgare 20 DA... 40 0.17
gb|BG367660.2|BG367660 HVSMEi0013B21f Hordeum vulgare 20 DA... 40 0.17
gb|BG369058.2|BG369058 HVSMEi0021J04f Hordeum vulgare 20 DA... 40 0.17
gb|BJ449472.1|BJ449472 BJ449472 K. Sato unpublished cDNA li... 40 0.17
gb|BJ459432.1|BJ459432 BJ459432 K. Sato unpublished cDNA li... 40 0.17
gb|BQ460973.1|BQ460973 HE01J14r HE Hordeum vulgare subsp. v... 40 0.17
gb|BQ462856.1|BQ462856 HI02D16r HI Hordeum vulgare subsp. v... 40 0.17
gb|BQ467924.1|BQ467924 HR01F22r HR Hordeum vulgare subsp. v... 40 0.17
gb|BU997123.1|BU997123 HI06P17r HI Hordeum vulgare subsp. v... 40 0.17
gb|CA011984.1|CA011984 HT04B14r HT Hordeum vulgare subsp. v... 40 0.17
gb|CA018351.1|CA018351 HV08G01r HV Hordeum vulgare subsp. v... 40 0.17
gb|CA022259.1|CA022259 HZ42J20r HZ Hordeum vulgare subsp. v... 40 0.17
gb|CB879149.1|CB879149 HP11B19T HP Hordeum vulgare subsp. v... 40 0.17
>gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023K15f, mRNA sequence
Length = 551
Score = 131 bits (66), Expect = 6e-029
Identities = 126/146 (86%)
Strand = Plus / Plus
Query: 310 tagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagtag 369
||||| |||||| ||| ||| |||||||||| || |||||||||| ||||||||||||||
Sbjct: 101 tagcaggtgaggctggtccccgggtcgacgccgaactgctggcagaactgcttgtagtag 160
Query: 370 ccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttgatg 429
||||||| |||| | || |||||| || |||||||||||||| ||||||||||||
Sbjct: 161 gcgacgcgatcgttgacggcggtggggttcttgccgttgcactcgagcgcgccgttgatg 220
Query: 430 gccctgatggtggcgccgaagccctg 455
|||||||||||||||||||| |||||
Sbjct: 221 gccctgatggtggcgccgaatccctg 246
Score = 63.9 bits (32), Expect = 1e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 580 ccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgcc 639
|||||||||||||||||||||| |||||||| ||||| |||||||| || ||| ||
Sbjct: 377 ccgtagttgtagttccacgagaattgcagcggaccgcggccgtagtagcccttcccggcg 436
Query: 640 gcgcacggccactgcctgttgctcgcgtcgcagtag 675
|||||||||||| | |||| ||| ||||||||||
Sbjct: 437 acgcacggccactccgtgttcgtcgggtcgcagtag 472
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 468 gtgcacgttgttcatccagaaccagagcgccg 499
||||||| ||||||||||| ||||||||||||
Sbjct: 265 gtgcacgctgttcatccagtaccagagcgccg 296
>gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16l19 5', mRNA sequence
Length = 532
Score = 121 bits (61), Expect = 6e-026
Identities = 274/345 (79%)
Strand = Plus / Minus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 381 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 322
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 321 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 262
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 261 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 202
Query: 488 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 547
|||||| ||||| || ||||| | | | | ||||||||||||| | | |||| | | |
Sbjct: 201 accagaacgccgcctggaacgtcaacgccgggtcctgcgccaccgtctccgggttgtcca 142
Query: 548 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 607
|||||||||| |||| | | |||||| | |||||||||||||||||||| | |||||
Sbjct: 141 gcccgttgaacccgagcttctccccggccgccccgtagttgtagttccacgtcagctgca 82
Query: 608 gcgggccgcgcccgtagtacttctgccccgccgcgcacggccact 652
|||| || |||||||||||| || ||||| | |||||||||||
Sbjct: 81 gcggccctcgcccgtagtaccccttccccgaggtgcacggccact 37
>gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16l19 3', mRNA sequence
Length = 505
Score = 121 bits (61), Expect = 6e-026
Identities = 274/345 (79%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 124 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 183
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 184 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 243
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 244 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 303
Query: 488 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 547
|||||| ||||| || ||||| | | | | ||||||||||||| | | |||| | | |
Sbjct: 304 accagaacgccgcctggaacgtcaacgccgggtcctgcgccaccgtctccgggttgtcca 363
Query: 548 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 607
|||||||||| |||| | | |||||| | |||||||||||||||||||| | |||||
Sbjct: 364 gcccgttgaacccgagcttctccccggccgccccgtagttgtagttccacgtcagctgca 423
Query: 608 gcgggccgcgcccgtagtacttctgccccgccgcgcacggccact 652
|||| || |||||||||||| || ||||| | |||||||||||
Sbjct: 424 gcggccctcgcccgtagtaccccttccccgaggtgcacggccact 468
>gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 3', mRNA sequence
Length = 633
Score = 113 bits (57), Expect = 1e-023
Identities = 275/347 (79%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
|||||||||||||| || ||| |||||||||| || |||||||||||| | |||||
Sbjct: 206 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagtaggcccggtagt 265
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | ||||||||||| ||| | ||| |||||||||||| ||| |||||
Sbjct: 266 agcccccccgcgcgttcatggcggccgagttcccgccgttgcactcgc---cgctgttga 322
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| |||| |||||||| ||| |||||| || | | |||||||||||||||||
Sbjct: 323 ttgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcatccaga 382
Query: 488 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 547
|||||||||||| ||||||||| | | | | ||||||||||||| | | |||| | ||
Sbjct: 383 accagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggttgttga 442
Query: 548 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 607
|||||| ||| |||| | | |||| || | |||||||||||||||||| | | |||||
Sbjct: 443 gcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcagctgca 502
Query: 608 gcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 654
|||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 503 gcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 549
>gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31c19 3', mRNA sequence
Length = 537
Score = 111 bits (56), Expect = 6e-023
Identities = 188/232 (81%)
Strand = Plus / Plus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 174 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 233
Query: 483 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 542
||||||||||||||||| ||||||||| | | | | ||||||||||||| | | ||||
Sbjct: 234 ccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggtt 293
Query: 543 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 602
| |||||||| ||| |||| | | |||| || | |||||||||||||||||| | |
Sbjct: 294 gttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcag 353
Query: 603 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 654
||||||||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 354 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 405
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || ||||||||||||||||||||||| ||||| |
Sbjct: 453 gatgtagcacatgtgtccagtctcatgtgtgacgtgcgcgaagaaggcggctatctccct 512
Query: 759 cttgcc 764
||||||
Sbjct: 513 cttgcc 518
>gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_K13 5', mRNA sequence
Length = 403
Score = 107 bits (54), Expect = 9e-022
Identities = 186/230 (80%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 250 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 191
Query: 483 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 542
||||||||||||||||| ||||||||| | | | | ||||||||||||| | | ||||
Sbjct: 190 ccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggtt 131
Query: 543 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 602
| |||||||| ||| |||| | | |||| || | |||||||||||||||||| | |
Sbjct: 130 gttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcag 71
Query: 603 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccact 652
||||||||| ||||||||||||||| || ||||| | |||||||||||
Sbjct: 70 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccact 21
>gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31e07 3', mRNA sequence
Length = 536
Score = 105 bits (53), Expect = 3e-021
Identities = 187/232 (80%)
Strand = Plus / Plus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 258 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 317
Query: 483 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 542
||||||||||||||||| ||||||||| | | | | ||||||||||||| | | ||||
Sbjct: 318 ccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggtt 377
Query: 543 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 602
| |||||||| ||| |||| | | |||| || | |||||||||||||||||| | |
Sbjct: 378 gttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcag 437
Query: 603 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 654
||||||||| ||||||||||||||| || |||| | |||||||||||||
Sbjct: 438 ctgcagcggcccgcgcccgtagtaccccttncccgaggtgcacggccactgc 489
Score = 99.6 bits (50), Expect = 2e-019
Identities = 253/320 (79%), Gaps = 3/320 (0%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
|||||||||||||| || ||| |||||||||| || ||||| |||||| | |||||
Sbjct: 146 cctagcaagtgaggctgttccccgggtcgacgccgaactgcttgcagtaggcccggtagt 205
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | ||||||||||| ||| | ||| ||||||||||| | ||| |||||
Sbjct: 206 agcccgcccgcgcgttcatggcggccgagttcccgccgttgcactc---gccgctgttga 262
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| |||| |||||||| ||| |||||| || | | |||||||||||||||||
Sbjct: 263 ttgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcatccaga 322
Query: 488 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 547
|||||||||||| ||||||||| | | | | ||||||||||||| | | |||| | ||
Sbjct: 323 accagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggttgttga 382
Query: 548 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 607
|||||| ||| |||| | | |||| || | |||||||||||||||||| | | |||||
Sbjct: 383 gcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcagctgca 442
Query: 608 gcgggccgcgcccgtagtac 627
|||| |||||||||||||||
Sbjct: 443 gcggcccgcgcccgtagtac 462
>gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX10F18
5-PRIME, mRNA sequence
Length = 613
Score = 103 bits (52), Expect = 1e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 471 cacgttgttcatccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccac 530
||||||||||||||||||||||||||||| ||||||||| | | | | ||||||||||||
Sbjct: 537 cacgttgttcatccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccac 478
Query: 531 cctgttggggtcggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgta 590
| | | |||| | |||||||| ||| |||| | | |||| || | ||||||||||||
Sbjct: 477 cttctccgggttgttgagcccgtcgaacccgacgctcttccccgccgccccgtagttgta 418
Query: 591 gttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggcca 650
|||||| | | ||||||||| ||||||||||||||| || ||||| | |||||||||
Sbjct: 417 gttccatgtcagctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggcca 358
Query: 651 ctgc 654
||||
Sbjct: 357 ctgc 354
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 306 gatgtagcacatgtgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccct 247
Query: 759 cttgcc 764
||||||
Sbjct: 246 cttgcc 241
>gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K07
3-PRIME, mRNA sequence
Length = 576
Score = 95.6 bits (48), Expect = 3e-018
Identities = 248/314 (78%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
|||||||||||||| || ||| |||||||||| || |||||||||||| | |||||
Sbjct: 266 cctagcaagtgaggctgttccccgggtcgacgccgaactgctggcagtaggcccggtagt 325
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | ||||||||||| ||| | ||| |||||||||||| ||| |||||
Sbjct: 326 agcccccccgcgcgttcatggcggccgagttcccgccgttgcactcgc---cgctgttga 382
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| |||| |||||||| ||| |||||| || | | |||||||||||||||||
Sbjct: 383 ttgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcatccaga 442
Query: 488 accagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtcggcga 547
|||||||||||| ||||||||| | | | | ||||||||||||| | | |||| | ||
Sbjct: 443 accagagcgccgccttgaacgccacctctgggtcctgcgccaccttctccgggttgttga 502
Query: 548 gcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgca 607
|||||| ||| |||| | | |||| || | |||||||||||||||||| | | |||||
Sbjct: 503 gcccgtcgaacccgacgctcttccccgccgccccgtagttgtagttccatgtcagctgca 562
Query: 608 gcgggccgcgcccg 621
|||| |||||||||
Sbjct: 563 gcggcccgcgcccg 576
>gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012G06f, mRNA sequence
Length = 767
Score = 89.7 bits (45), Expect = 2e-016
Identities = 162/201 (80%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 152 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 211
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 212 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 271
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 272 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 331
Query: 488 accagagcgccgtcttgaacg 508
|||||| ||||| || |||||
Sbjct: 332 accagaacgccgcctggaacg 352
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 570 cccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtac 627
|||||| | |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 414 cccggccgccccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtac 471
>gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19d09 5', mRNA sequence
Length = 360
Score = 85.7 bits (43), Expect = 3e-015
Identities = 154/191 (80%)
Strand = Plus / Minus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 192 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 133
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 132 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 73
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 72 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 13
Query: 488 accagagcgcc 498
|||||| ||||
Sbjct: 12 accagaacgcc 2
>gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19d09 3', mRNA sequence
Length = 340
Score = 85.7 bits (43), Expect = 3e-015
Identities = 154/191 (80%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 149 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 208
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 209 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 268
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| |||||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 269 ttgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 328
Query: 488 accagagcgcc 498
|||||| ||||
Sbjct: 329 accagaacgcc 339
>gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007D10f, mRNA sequence
Length = 617
Score = 81.8 bits (41), Expect = 5e-014
Identities = 161/201 (80%)
Strand = Plus / Minus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 572 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 513
Query: 368 agccgacgcgcgcgttcatctgggcggggttgttcccgttgcactcgagggcgccgttga 427
|||| | |||||||||| | | | || || || |||| |||||| | | |||||||
Sbjct: 512 agcccgcccgcgcgttcaccaagtctggcttcttgccgtcgcactccacgtaaccgttga 453
Query: 428 tggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcatccaga 487
| || ||| | || |||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 452 ttgcactggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtcatccaga 393
Query: 488 accagagcgccgtcttgaacg 508
|||||| ||||| || |||||
Sbjct: 392 accagaacgccgcctggaacg 372
Score = 61.9 bits (31), Expect = 5e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 570 cccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtactt 629
|||||| | |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 310 cccggccgccccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtaccc 251
Query: 630 ctgccccgccgcgcacggccact 652
|| ||||| | |||||||||||
Sbjct: 250 cttccccgaggtgcacggccact 228
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 166 gatgtagcacatgtgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccct 107
Query: 759 cttgcc 764
||||||
Sbjct: 106 cttgcc 101
>gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P16f, mRNA sequence
Length = 725
Score = 81.8 bits (41), Expect = 5e-014
Identities = 184/232 (79%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| ||| | | ||| ||||||||
Sbjct: 591 gttgattgccctggtggtcgcgccgaacccccgcggcaggacatgcttcacattgttcat 532
Query: 483 ccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccaccctgttggggtc 542
||||||||||||||||| |||||||| | | | | ||| |||||||| | | ||||
Sbjct: 531 ccagaaccagagcgccgctttgaacgccacctctgggtcatgcgccacattctcgggggt 472
Query: 543 ggcgagcccgttgaagccgatgtccctcccggcgggcccgtagttgtagttccacgagat 602
| |||||||| ||| |||| | | |||| || | ||||||||||||||||| | |
Sbjct: 471 gttgagcccgtcgaacccgacgctcttccccgccgcnccgtagttgtagttccatgtcag 412
Query: 603 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 654
||||||||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 411 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 360
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 312 gatgtagcacatgtgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccct 253
Query: 759 cttgcc 764
||||||
Sbjct: 252 cttgcc 247
>gb|BE559172.3|BE559172 HV_CEb0023M17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023M17f, mRNA sequence
Length = 532
Score = 79.8 bits (40), Expect = 2e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 687 gttgatctcgctgatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggc 746
|||||||||| |||||||||||| | | ||||||||| ||||||| |||||||||||
Sbjct: 492 gttgatctcgtcgatgtagcagaactttatggtctcgtggttgacgtgggcgaagaaggc 433
Query: 747 ggcgatctcgcgcttg 762
||||||||||||||||
Sbjct: 432 ggcgatctcgcgcttg 417
>gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_C05 5', mRNA sequence
Length = 426
Score = 77.8 bits (39), Expect = 8e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 106 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 47
Query: 483 ccagaaccagagcgccgtcttgaacgc 509
||||||||||||||||| |||||||||
Sbjct: 46 ccagaaccagagcgccgccttgaacgc 20
>gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_F06 5', mRNA sequence
Length = 420
Score = 77.8 bits (39), Expect = 8e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 106 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 47
Query: 483 ccagaaccagagcgccgtcttgaacgc 509
||||||||||||||||| |||||||||
Sbjct: 46 ccagaaccagagcgccgccttgaacgc 20
>gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_G13 5', mRNA sequence
Length = 420
Score = 77.8 bits (39), Expect = 8e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 106 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 47
Query: 483 ccagaaccagagcgccgtcttgaacgc 509
||||||||||||||||| |||||||||
Sbjct: 46 ccagaaccagagcgccgccttgaacgc 20
>gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ003_J08 5', mRNA sequence
Length = 111
Score = 73.8 bits (37), Expect = 1e-011
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 471 cacgttgttcatccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccac 530
||||||||||||||||||||||||||||| ||||||||| | | | | ||||||||||||
Sbjct: 79 cacgttgttcatccagaaccagagcgccgccttgaacgccacctctgggtcctgcgccac 20
Query: 531 c 531
|
Sbjct: 19 c 19
>gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009D03f, mRNA sequence
Length = 557
Score = 71.9 bits (36), Expect = 5e-011
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 421 ccgttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttc 480
|||||||| |||||| | || |||||||| |||||||||| || ||||||||||| ||
Sbjct: 554 ccgttgattgccctggtcgtcgcgccgaacccctgcggcaggacctggtgcacgttggtc 495
Query: 481 atccagaaccagagcgccgtcttgaacg 508
||||||||||||| ||||| || |||||
Sbjct: 494 atccagaaccagaacgccgcctggaacg 467
Score = 61.9 bits (31), Expect = 5e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 570 cccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtactt 629
|||||| | |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 405 cccggccgccccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtaccc 346
Query: 630 ctgccccgccgcgcacggccact 652
|| ||||| | |||||||||||
Sbjct: 345 cttccccgaggtgcacggccact 323
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 261 gatgtagcacatgtgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccct 202
Query: 759 cttgcc 764
||||||
Sbjct: 201 cttgcc 196
>gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026E04F1, mRNA sequence
Length = 240
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 98 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 39
Query: 483 ccagaaccagagcgccgtcttgaacgc 509
|||||||||||| |||| |||||||||
Sbjct: 38 ccagaaccagagtgccgccttgaacgc 12
>gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026E04F2, mRNA sequence
Length = 240
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 423 gttgatggccctgatggtggcgccgaagccctgcggcatcacacggtgcacgttgttcat 482
|||||| |||||| |||| |||||||| ||| |||||| || | | ||||||||||||
Sbjct: 98 gttgattgccctggtggtcgcgccgaacccccgcggcaggacctgcttcacgttgttcat 39
Query: 483 ccagaaccagagcgccgtcttgaacgc 509
|||||||||||| |||| |||||||||
Sbjct: 38 ccagaaccagagtgccgccttgaacgc 12
>gb|BI946904.1|BI946904 HVSMEl0002L21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002L21f, mRNA sequence
Length = 839
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 558 gccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcg 617
||||||| ||| ||| || ||||||||||||||||| |||||||| | || |||||
Sbjct: 479 gccgatggcccgccctgccggcccgtagttgtagttgtgggagatctggatgggcccgcg 420
Query: 618 cccgtagtacttctgccccgccgcgcacggccactgc 654
|||| ||||||||| |||| ||||||||||||||||
Sbjct: 419 cccgaagtacttcttgcccggcgcgcacggccactgc 383
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 479 tcatccagaaccagagcgccgtcttgaa 506
||||||||||||| | ||||||||||||
Sbjct: 558 tcatccagaaccacaacgccgtcttgaa 531
>gb|BG367616.2|BG367616 HVSMEi0012P08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012P08f, mRNA sequence
Length = 710
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 558 gccgatgtccctcccggcgggcccgtagttgtagttccacgagatctgcagcgggccgcg 617
||||||| ||| ||| || ||||||||||||||||| |||||||| | || |||||
Sbjct: 689 gccgatggcccgccctgccggcccgtagttgtagttgtgggagatctggatgggcccgcg 630
Query: 618 cccgtagtacttctgccccgccgcgcacggccactgc 654
|||| ||||||||| |||| ||||||||||||||||
Sbjct: 629 cccgaagtacttcttgcccggcgcgcacggccactgc 593
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 993 gccgcagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcaga 1042
||||||||||||| ||| | ||||||| |||||||| ||||||||||||
Sbjct: 214 gccgcagtagtcggaggtggagccgcagaagccgaacctgctgcagcaga 165
>gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0018G12f, mRNA sequence
Length = 523
Score = 65.9 bits (33), Expect = 3e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 473 cgttgttcatccagaaccagagcgccgtcttgaacgc 509
||||||||||||||||||||||||||| |||||||||
Sbjct: 306 cgttgttcatccagaaccagagcgccgccttgaacgc 270
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 580 ccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgcc 639
||||||||||||||||| | | ||||||||| ||||||||||||||| || |||||
Sbjct: 198 ccgtagttgtagttccatgtcagctgcagcggcccgcgcccgtagtaccccttccccgag 139
Query: 640 gcgcacggccactgc 654
| |||||||||||||
Sbjct: 138 gtgcacggccactgc 124
Score = 58.0 bits (29), Expect = 7e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctc 755
||||||||| | ||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 76 gatgtagcacatgtgtccagtctcatgtgtgacgtgcgcgaagaaggcggctatctc 20
>gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_K12 5', mRNA sequence
Length = 592
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 579 cccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgc 638
|||||||||||||||||| | | ||||||||| ||||||||||||||| || |||||
Sbjct: 575 cccgtagttgtagttccatgtcagctgcagcggcccgcgcccgtagtaccccttccccga 516
Query: 639 cgcgcacggccactgc 654
| |||||||||||||
Sbjct: 515 ggtgcacggccactgc 500
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 203 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 144
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 143 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 99
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 452 gatgtagcacatgtgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccct 393
Query: 759 cttgcc 764
||||||
Sbjct: 392 cttgcc 387
>gb|BF627814.2|BF627814 HVSMEb0005N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005N23f, mRNA sequence
Length = 751
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 467 gatgtagcacatgtgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccct 408
Query: 759 cttgcc 764
||||||
Sbjct: 407 cttgcc 402
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1028 acttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 158 acttgctgcagcactcgttcggctggcagccgcagttctgcgc 116
>gb|BE213990.1|BE213990 HV_CEb0001N13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001N13f, mRNA sequence
Length = 972
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 487 gatgtagcacatgtgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccct 428
Query: 759 cttgcc 764
||||||
Sbjct: 427 cttgcc 422
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
|||||||||||| ||| |||||||||||||||||||||||
Sbjct: 178 cttgctgcagcactcgttcggctggcagccgcagttctgcgc 137
>gb|BE558718.1|BE558718 HV_CEb0020C16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020C16f, mRNA sequence
Length = 789
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 460 gatgtagcacatgtgtccagtctcttgcgtgacgtgggcgaagaaggcggctatctccct 401
Query: 759 cttgcc 764
||||||
Sbjct: 400 cttgcc 395
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1015 ccgcagtagccgaacttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
||||| || ||| ||||||||||||| ||| ||||||||||||||||| |||||
Sbjct: 165 ccgcaataaccgtacttgctgcagcactcgttcggctggcagccgcagttttgcgc 110
Score = 40.1 bits (20), Expect = 0.17
Identities = 51/60 (85%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 570 cccggcgggccc-gtagttgtagttccacgagatctgcagcgggccgcgcccgtagtact 628
|||||| ||||| ||||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 606 cccggccggcccagtagttgtagttccacgtcagttgcagcggccgtcgcccgtagtact 547
>gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009I06f, mRNA sequence
Length = 569
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 430 gatgtagcacatgtgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccct 371
Query: 759 cttgcc 764
||||||
Sbjct: 370 cttgcc 365
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1015 ccgcagtagccgaacttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
||||| || ||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 135 ccgcaataaccgtacttgctgcagcactcgttcggctggcagccgcagttctgcgc 80
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 579 cccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgc 638
|||||||||||||||||||| | |||||||| || |||||||||||| || |||||
Sbjct: 565 cccgtagttgtagttccacgtcagttgcagcggccctcgcccgtagtaccccttccccga 506
Query: 639 cgcgcacggccact 652
| |||||||||||
Sbjct: 505 ggtgcacggccact 492
>gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010F03f, mRNA sequence
Length = 953
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 579 cccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgc 638
|||||||||||||||||||| | ||||||||| || |||||||||||| || |||||
Sbjct: 589 cccgtagttgtagttccacgtcagctgcagcggccctcgcccgtagtaccccttccccga 530
Query: 639 cgcgcacggccact 652
| |||||||||||
Sbjct: 529 ggtgcacggccact 516
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 454 gatgtagcacatgtgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccct 395
Query: 759 cttgcc 764
||||||
Sbjct: 394 cttgcc 389
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1015 ccgcagtagccgaacttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
||||| || ||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 159 ccgcaataaccgtacttgctgcagcactcgttcggctggcagccgcagttctgcgc 104
>gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46e16 5', mRNA sequence
Length = 340
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 158 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 99
Query: 368 agccgacgcgcgcgttca 385
|||| | ||||||||||
Sbjct: 98 agcccgcccgcgcgttca 81
>gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46e16 3', mRNA sequence
Length = 325
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 308 cctagcaagtgaggttgggccctgggtcgacgcggagctgctggcagtactgcttgtagt 367
||||||||||||||||| ||| |||||||||| || ||||| |||||| | | ||||||
Sbjct: 168 cctagcaagtgaggttgttccccgggtcgacgccgaactgcttgcagtagtccatgtagt 227
Query: 368 agccgacgcgcgcgttca 385
|||| | ||||||||||
Sbjct: 228 agcccgcccgcgcgttca 245
>gb|BF623642.2|BF623642 HVSMEa0003E14f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0003E14f, mRNA sequence
Length = 488
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 218 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 159
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 158 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 114
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 467 gatgtagcacatgtgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccct 408
Query: 759 cttgcc 764
||||||
Sbjct: 407 cttgcc 402
>gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0016O17f, mRNA sequence
Length = 843
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 211 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 152
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 151 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 107
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 460 gatgtagcacatgtgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccct 401
Query: 759 cttgcc 764
||||||
Sbjct: 400 cttgcc 395
Score = 50.1 bits (25), Expect = 2e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 582 gtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgccccgccgc 641
||||||||||||||| | | ||||| ||| ||||||||||||||| || ||||| |
Sbjct: 580 gtagttgtagttccatgtcagctgcaacggcccgcgcccgtagtaccccttccccgaggt 521
Query: 642 gcacggccactgc 654
|||||||||||||
Sbjct: 520 gcacggccactgc 508
>gb|BG300488.1|BG300488 HVSMEb0017D20f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0017D20f, mRNA sequence
Length = 876
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 211 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 152
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 151 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 107
Score = 48.1 bits (24), Expect = 7e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 gtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcgcttgcc 764
|||| ||||| || |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 446 gtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccctcttgcc 395
>gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23h02 5', mRNA sequence
Length = 558
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 196 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 137
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 136 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 92
Score = 52.0 bits (26), Expect = 4e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcg 758
||||||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 445 gatgtagcacatgtgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccct 386
Query: 759 cttgcc 764
||||||
Sbjct: 385 cttgcc 380
Score = 48.1 bits (24), Expect = 7e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 603 ctgcagcgggccgcgcccgtagtacttctgccccgccgcgcacggccactgc 654
||||||||| ||||||||||||||| || ||||| | |||||||||||||
Sbjct: 544 ctgcagcggcccgcgcccgtagtaccccttccccgaggtgcacggccactgc 493
>gb|BM097408.2|BM097408 EBem07_SQ001_P19_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ001_P19 5', mRNA sequence
Length = 366
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 202 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 143
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 142 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 98
>gb|BM369392.2|BM369392 EBem07_SQ003_H07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_H07 5', mRNA sequence
Length = 494
Score = 58.0 bits (29), Expect = 7e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 699 gatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctc 755
||||||||| | ||||| |||||||| |||||||| |||||||||||||| |||||
Sbjct: 478 gatgtagcacatgtgtccagtctcgtgtgtgacgtgggcgaagaaggcggctatctc 422
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 832 gtgtagaagttcttgccctcgcacccgctcccggcctggttcttgatgccgttgaagaac 891
||||| ||| ||||||| |||||||| | |||||| || |||||| ||||||||||||
Sbjct: 345 gtgtaaaagctcttgccggcgcacccgttgccggcccgggacttgatcccgttgaagaac 286
Query: 892 gc 893
||
Sbjct: 285 gc 284
Score = 42.1 bits (21), Expect = 0.043
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 997 cagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcagaagttaggctggcag 1056
|||||| ||||||| |||||||| || ||| || ||||||||| ||| | | |||||
Sbjct: 192 cagtaggcgtcggtagtgccgcaataaccgtaccggctgcagcactcgttcgcccggcag 133
Query: 1057 ccgcagttctgcgcggc 1073
||||| |||||||||||
Sbjct: 132 ccgcacttctgcgcggc 116
>gb|BM369656.2|BM369656 EBem07_SQ004_D22_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D22 5', mRNA sequence
Length = 322
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 224 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 165
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 164 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 120
>gb|BM369786.2|BM369786 EBem07_SQ004_J18_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_J18 5', mRNA sequence
Length = 394
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 224 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 165
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 164 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 120
>gb|BM368400.2|BM368400 EBem08_SQ002_B18_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_B18 5', mRNA sequence
Length = 454
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 969 gcacgggcccgactggcacccgtcgccgcagtagtcgtcggtcgtgccgcagtagccgaa 1028
||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||| |
Sbjct: 212 gcacgggccagactgacatccatctccacagtaggcgtcggtagtgccgcaataaccgta 153
Query: 1029 cttgctgcagcagaagttaggctggcagccgcagttctgcgcggc 1073
| ||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 152 ccggctgcagcactcgttcgcccggcagccgcagttctgcgcggc 108
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 712 tgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcgcttgcc 764
||||| ||||| || |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 448 tgtccagtctcatgtgtgacgtgggcgaagaaggcggctatctccctcttgcc 396
>gb|BQ765750.1|BQ765750 EBro03_SQ008_F04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_F04 5', mRNA sequence
Length = 549
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 712 tgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgcgcttgcc 764
||||| ||||| ||||||||||| |||||||||||||| ||||| | ||||||
Sbjct: 454 tgtccagtctcctgcgtgacgtgggcgaagaaggcggctatctccctcttgcc 402
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1015 ccgcagtagccgaacttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
||||| || ||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 172 ccgcaataaccgtacttgctgcagcactcgttcggctggcagccgcagttctgcgc 117
>gb|BE216858.2|BE216858 HV_CEb0011N12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011N12f, mRNA sequence
Length = 953
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1015 ccgcagtagccgaacttgctgcagcagaagttaggctggcagccgcagttctgcgc 1070
||||| || ||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 159 ccgcaataaccgtacttgctgcagcactcgttcggctggcagccgcagttctgcgc 104
Score = 46.1 bits (23), Expect = 0.003
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 698 tgatgtagcagaaatgtccggtctcgtgcgtgacgtgcgcgaagaaggcggcgatctcgc 757
|||||||||| | ||||| ||||| ||||| ||||| ||||||||||||| ||||| |
Sbjct: 455 tgatgtagcacatgtgtccagtctcctgcgtcacgtggccgaagaaggcggctatctccc 396
Query: 758 gcttgcc 764
||||||
Sbjct: 395 tcttgcc 389
>gb|BG367460.1|BG367460 HVSMEi0012F13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012F13f, mRNA sequence
Length = 705
Score = 52.0 bits (26), Expect = 4e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 577 ggcccgtagttgtagttccacgagatctgcagcgggccgcgcccgtagtacttctgcccc 636
|||| |||||||||||| |||||||| | || ||||||||| ||||||||| |||
Sbjct: 671 ggccggtagttgtagttgtgggagatctggatgggcccgcgcccgaagtacttcttgccc 612
Query: 637 gccgcgcacggccactgc 654
| ||||||||||||||||
Sbjct: 611 ggcgcgcacggccactgc 594
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 993 gccgcagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcaga 1042
||||||||||||| ||| | ||||||| |||||||| ||||||||||||
Sbjct: 216 gccgcagtagtcggaggtggagccgcagaagccgaacctgctgcagcaga 167
>gb|BI948276.1|BI948276 HVSMEl0008N14f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0008N14f, mRNA sequence
Length = 1058
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 993 gccgcagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcaga 1042
||||||||||||| ||| | ||||||| |||||||| ||||||||||||
Sbjct: 197 gccgcagtagtcggaggtggagccgcagaagccgaacctgctgcagcaga 148
>gb|BI949350.1|BI949350 HVSMEl0013H11f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0013H11f, mRNA sequence
Length = 830
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 993 gccgcagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcaga 1042
||||||||||||| ||| | ||||||| |||||||| ||||||||||||
Sbjct: 195 gccgcagtagtcggaggtggagccgcagaagccgaacctgctgcagcaga 146
>gb|BI949605.1|BI949605 HVSMEl0014O01f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0014O01f, mRNA sequence
Length = 839
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 993 gccgcagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcaga 1042
||||||||||||| ||| | ||||||| |||||||| ||||||||||||
Sbjct: 215 gccgcagtagtcggaggtggagccgcagaagccgaacctgctgcagcaga 166
>gb|BI954237.1|BI954237 HVSMEm0016M07f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0016M07f, mRNA sequence
Length = 676
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 993 gccgcagtagtcgtcggtcgtgccgcagtagccgaacttgctgcagcaga 1042
||||||||||||| ||| | ||||||| |||||||| ||||||||||||
Sbjct: 211 gccgcagtagtcggaggtggagccgcagaagccgaacctgctgcagcaga 162
>gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019P18f, mRNA sequence
Length = 713
Score = 52.0 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 479 tcatccagaaccagagcgccgtcttgaacg 508
||||||||||||| ||||||||||||||||
Sbjct: 244 tcatccagaaccacagcgccgtcttgaacg 215
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,309
Number of Sequences: 312970
Number of extensions: 154309
Number of successful extensions: 40699
Number of sequences better than 0.5: 169
Number of HSP's better than 0.5 without gapping: 167
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40232
Number of HSP's gapped (non-prelim): 459
length of query: 1225
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1206
effective length of database: 169,188,109
effective search space: 204040859454
effective search space used: 204040859454
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)