BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 504 e-141
gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA li... 458 e-127
gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. v... 436 e-121
gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA li... 404 e-111
gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-a... 391 e-107
gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 ... 377 e-103
gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA li... 365 2e-099
gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, red... 365 2e-099
gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 ... 347 5e-094
gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa... 323 7e-087
gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-a... 287 4e-076
gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA li... 278 4e-073
gb|AV909996.1|AV909996 AV909996 K. Sato unpublished cDNA li... 216 1e-054
gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachi... 194 4e-048
gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA li... 165 4e-039
gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA li... 165 4e-039
gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA li... 165 4e-039
gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthe... 151 6e-035
gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA li... 125 3e-027
gb|AV930114.1|AV930114 AV930114 K. Sato unpublished cDNA li... 101 5e-020
gb|AV930104.1|AV930104 AV930104 K. Sato unpublished cDNA li... 96 3e-018
gb|AV930113.1|AV930113 AV930113 K. Sato unpublished cDNA li... 92 5e-017
gb|BG418753.1|BG418753 HVSMEk0024E15f Hordeum vulgare testa... 64 1e-008
gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, n... 64 1e-008
gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. v... 64 1e-008
gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. v... 64 1e-008
gb|AL509770.1|AL509770 AL509770 Hordeum vulgare Barke devel... 60 2e-007
gb|AW982666.3|AW982666 HVSMEg0003O04f Hordeum vulgare pre-a... 60 2e-007
gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthe... 60 2e-007
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 60 2e-007
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 60 2e-007
gb|AL500279.1|AL500279 AL500279 Hordeum vulgare Barke etiol... 52 4e-005
gb|AL511705.1|AL511705 AL511705 Hordeum vulgare Barke devel... 52 4e-005
gb|AJ431974.1|AJ431974 AJ431974 S00002 Hordeum vulgare subs... 52 4e-005
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 52 4e-005
gb|BI949643.1|BI949643 HVSMEl0015A22f Hordeum vulgare spike... 50 2e-004
gb|CD662867.1|CD662867 UCRHV18_03bg02_b1 Drought-stressed D... 44 0.009
gb|CA003964.1|CA003964 HS16C09r HS Hordeum vulgare subsp. v... 40 0.15
gb|CD240717.1|CD240717 LP10318 Lemma/palea-enriched cDNA li... 40 0.15
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 504 bits (254), Expect = e-141
Identities = 512/598 (85%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||
Sbjct: 1334 aggttcttctcagcaggttgcggctcttcctaagcccagggtatccttatgaagaaatat 1393
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
| |||||||||||||||||||| |||||||| |||||||||||| | || |||||||||
Sbjct: 1394 taaggacattccacaaccaaactgacaatgtcatgtgctcatatttaccagtattcaatt 1453
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 1454 cattcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaaccacttc 1513
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||
Sbjct: 1514 agtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacactgcag 1573
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || || |||||||| || |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 1574 atacaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaagtttg 1633
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| | ||||||||| || ||||| || |||||||||||| |||||||||||||| ||||
Sbjct: 1634 caaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgg 1693
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| ||||| |||||||| ||||| |||||||||||| || || || ||||| ||||
Sbjct: 1694 gttttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacg 1753
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||||| || ||||| || | ||||| ||||||||||
Sbjct: 1754 gtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagcaaacccta 1813
Query: 486 acatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtcc 545
| ||||| |||||||||||||| ||||| || |||| || |||||||| ||||||| |||
Sbjct: 1814 atatcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatcc 1873
Query: 546 gcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|||| || ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1874 gcacaaattacaattacacagagcctactcttgcagcaaatgctggcctggttgcagc 1931
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 1975 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 2034
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 2035 tcagcttggaaacc 2048
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 2348 gtgtgaagttcttttt-gtagaaatggtaccttt 2380
>gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 5', mRNA sequence
Length = 607
Score = 458 bits (231), Expect = e-127
Identities = 477/559 (85%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||
Sbjct: 46 aggttcttctcagcaggttgcggctcttcctaagcccagggtatccttatgaagaaatat 105
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
| |||||||||||||||||||| |||||||| |||||||||||| | || |||||||||
Sbjct: 106 taaggacattccacaaccaaactgacaatgtcatgtgctcatatttaccagtattcaatt 165
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 166 cattcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaaccacttc 225
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||
Sbjct: 226 agtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacactgcag 285
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || || |||||||| || |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 286 atacaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaagtttg 345
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| | ||||||||| || ||||| || |||||||||||| |||||||||||||| ||||
Sbjct: 346 caaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgg 405
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| ||||| |||||||| ||||| |||||||||||| || || || ||||| ||||
Sbjct: 406 gttttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacg 465
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||||| || ||||| || | ||||| ||||||||||
Sbjct: 466 gtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagcaaacccta 525
Query: 486 acatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtcc 545
| ||||| |||||||||||||| ||||| || |||| || |||||||| ||||||| |||
Sbjct: 526 atatcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatcc 585
Query: 546 gcacgaactacaactacac 564
|||| || ||||| |||||
Sbjct: 586 gcacaaattacaattacac 604
>gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E02
5-PRIME, mRNA sequence
Length = 583
Score = 436 bits (220), Expect = e-121
Identities = 451/528 (85%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||
Sbjct: 55 aggttcttctcagcaggttgcggctcttcctaagcccagggtatccttatgaagaaatat 114
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
| |||||||||||||||||||| |||||||| |||||||||||| | || |||||||||
Sbjct: 115 taaggacattccacaaccaaactgacaatgtcatgtgctcatatttaccagtattcaatt 174
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 175 cattcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaaccacttc 234
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||
Sbjct: 235 agtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacactgcag 294
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || || |||||||| || |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 295 atacaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaagtttg 354
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| | ||||||||| || ||||| || |||||||||||| |||||||||||||| ||||
Sbjct: 355 caaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgg 414
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| ||||| |||||||| ||||| |||||||||||| || || || ||||| ||||
Sbjct: 415 gttttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacg 474
Query: 426 gcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaacccta 485
| ||||| ||||| ||||||||||||| || ||||| || | ||||| ||||||||||
Sbjct: 475 gtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagcaaacccta 534
Query: 486 acatccttgtcggagcaatggtggctggccccgacaggcgtgatggct 533
| ||||| |||||||||||||| ||||| || |||| || ||||||||
Sbjct: 535 atatcctcgtcggagcaatggttgctgggcctgacaagcatgatggct 582
>gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 5', mRNA sequence
Length = 507
Score = 404 bits (204), Expect = e-111
Identities = 429/504 (85%)
Strand = Plus / Plus
Query: 30 tcttcctaagtccagggtacccttacgaagaaatactgaggacattccacaaccaaaccg 89
|||||||||| |||||||| ||||| ||||||||| | |||||||||||||||||||| |
Sbjct: 2 tcttcctaagcccagggtatccttatgaagaaatattaaggacattccacaaccaaactg 61
Query: 90 acaatgttatgtgctcatatctgcctctattcaattcattcaacttcactaaaggaggac 149
||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 62 acaatgtcatgtgctcatatttaccagtattcaattcattcaacttcactaaaggaggac 121
Query: 150 taatacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttcc 209
| |||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||||
Sbjct: 122 tgatacaactcaaccatggagggcctcaaccacttcagtacgtcgtcaatgcagcattcc 181
Query: 210 ttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggtactgcggac 269
|||| ||||| || || ||||| || ||||||| || || |||||||| || ||||
Sbjct: 182 ttgcctctctgtatgctgattatctggacactgcagatacaccagggtggtattgtggac 241
Query: 270 ctaacttctacaccacagaagtcctccgcaagtttgccaggtcacagctcgactacatcc 329
|||| ||||| |||||||| ||||||||||||||||| | ||||||||| || ||||| |
Sbjct: 242 ctaatttctataccacagatgtcctccgcaagtttgcaaagtcacagcttgattacattc 301
Query: 330 ttggcaagaacccattgaagatgagctacgttgtgggtttcggaaacaagtacccgaagc 389
| |||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct: 302 taggcaagaacccacaaaagatgagctacgtcgtgggttttggaaagaagtaccccaagc 361
Query: 390 gccctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggag 449
| |||||||||||| || || || ||||| ||||| ||||| ||||| ||||||||||
Sbjct: 362 gtgttcatcacagaggggcatcaatccctcataacggtgtcaaatatggatgcaaaggag 421
Query: 450 gttacaagtggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtgg 509
||| || ||||| || | ||||| ||||||||||| ||||| |||||||||||||| |
Sbjct: 422 gttttaaatggagagagtctaagaaagcaaaccctaatatcctcgtcggagcaatggttg 481
Query: 510 ctggccccgacaggcgtgatggct 533
|||| || |||| || ||||||||
Sbjct: 482 ctgggcctgacaagcatgatggct 505
>gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004M14f, mRNA sequence
Length = 562
Score = 391 bits (197), Expect = e-107
Identities = 443/525 (84%)
Strand = Plus / Plus
Query: 77 cacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaattcattcaacttc 136
||||||||||| |||||||| |||||||| ||| | || ||||||||||||||||||||
Sbjct: 1 cacaaccaaactgacaatgtcatgtgctcgtatttaccagtattcaattcattcaacttc 60
Query: 137 actaaaggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtc 196
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct: 61 actaaaggaggactgatacaactcaaccatggagggcctcaaccacttcagtacgtcgtc 120
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
|| ||||| |||||||| ||||| || || ||||| || ||||||| || || |||
Sbjct: 121 aatgcagcattccttgcctctctgtatgctgattatctggacactgcagatacaccaggg 180
Query: 257 tggtactgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
||||| || |||||||| ||||| |||||||| ||||||||||||||||| | |||||||
Sbjct: 181 tggtattgtggacctaatttctataccacagatgtcctccgcaagtttgcaaagtcacag 240
Query: 317 ctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcggaaac 376
|| || ||||| || |||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 241 cttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgggttttggaaag 300
Query: 377 aagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtat 436
|||||||| ||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 301 aagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggtgtcaaatat 360
Query: 437 gggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtc 496
|| ||||||||||||| || ||||| || | ||||| ||||||||||| ||||| |||
Sbjct: 361 ggatgcaaaggaggttttaaatggagagagtctaagaaagcaaaccctaatatcctcgtc 420
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
||||||||||| ||||| || |||| || |||||||| ||||||| ||||||| || |||
Sbjct: 421 ggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaattac 480
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgca 601
|| ||||| |||||||||| ||||| |||||||| |||| ||||
Sbjct: 481 aattacacaaagcctactcttgcagcaaatgctggcctgggtgca 525
>gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M02f, mRNA sequence
Length = 641
Score = 377 bits (190), Expect = e-103
Identities = 409/482 (84%)
Strand = Plus / Plus
Query: 122 aattcattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagcca 181
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct: 1 aattcattcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaacca 60
Query: 182 cttcagtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagct 241
|||||||||| ||||| ||||| |||||||| ||||| || || ||||| || ||
Sbjct: 61 cttcagtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacact 120
Query: 242 gcagacacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaag 301
||||| || || |||||||| || |||||||| ||||| |||||||| ||||||||||||
Sbjct: 121 gcagatacaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaag 180
Query: 302 tttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgtt 361
||||| | ||||||||| || ||||| || |||||||||||| ||||||||||||||
Sbjct: 181 tttgcaaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacgtc 240
Query: 362 gtgggtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcac 421
|||||||| ||||| |||||||| ||||| |||||||||||| || || || |||||
Sbjct: 241 gtgggttttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccctcat 300
Query: 422 aacggcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaac 481
||||| ||||| ||||| ||||||||||||| || ||||| || | ||||| ||||||
Sbjct: 301 aacggtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagcaaac 360
Query: 482 cctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagat 541
||||| ||||| |||||||||||||| ||||| || |||| || |||||||| |||||||
Sbjct: 361 cctaatatcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttcaaagat 420
Query: 542 gtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgca 601
||||||| || ||||| ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 421 atccgcacaaattacaattacacagagcctactcttgcagcaaatgctggcctggttgca 480
Query: 602 gc 603
||
Sbjct: 481 gc 482
Score = 50.1 bits (25), Expect = 2e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 648 ataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgccat 707
||||||||||||||||||| || |||| || ||||||| || ||||| || ||||| |
Sbjct: 527 ataagaacaccatcttctcagcagttcccccaatgttcctgacacccccaccaccgccgt 586
Query: 708 cagcatggaaacc 720
|||| ||||||||
Sbjct: 587 cagcttggaaacc 599
>gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 5', mRNA sequence
Length = 617
Score = 365 bits (184), Expect = 2e-099
Identities = 346/400 (86%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||
Sbjct: 204 aggttcttctcagcaggttgcggctcttcctaagcccagggtatccttatgaagaaatat 263
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
| |||||||||||||||||||| |||||||| |||||||||||| | || |||||||||
Sbjct: 264 taaggacattccacaaccaaactgacaatgtcatgtgctcatatttaccagtattcaatt 323
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 324 cattcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaaccacttc 383
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||
Sbjct: 384 agtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacactgcag 443
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || || |||||||| || |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 444 atacaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaagtttg 503
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| | ||||||||| || ||||| || |||||||||||| |||||||||||||| ||||
Sbjct: 504 caaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgg 563
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagagg 405
|||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 564 gttttggaaagaagtaccccaagcgtgttcatcacagagg 603
>gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_F03 5', mRNA sequence
Length = 499
Score = 365 bits (184), Expect = 2e-099
Identities = 403/476 (84%)
Strand = Plus / Plus
Query: 128 ttcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttcag 187
||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 1 ttcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaaccacttcag 60
Query: 188 tacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcagac 247
|||| ||||| ||||| |||||||| ||||| || || ||||| || |||||||
Sbjct: 61 tacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacactgcagat 120
Query: 248 acgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttgcc 307
|| || |||||||| || |||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 121 acaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaagtttgca 180
Query: 308 aggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggt 367
| ||||||||| || ||||| || |||||||||||| |||||||||||||| ||||||
Sbjct: 181 aagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgggt 240
Query: 368 ttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggc 427
|| ||||| |||||||| ||||| |||||||||||| || || || ||||| |||||
Sbjct: 241 tttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggt 300
Query: 428 gtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaac 487
||||| ||||| ||||||||||||| || ||||| || | ||||| |||||||||||
Sbjct: 301 gtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagcaaaccctaat 360
Query: 488 atccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgc 547
||||| |||||||||||||| ||||| || |||| || |||||||| ||||||| |||||
Sbjct: 361 atcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgc 420
Query: 548 acgaactacaactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| || ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 421 acaaattacaattacacagagcctactcttgcagcaaatgctggcctggttgcagc 476
>gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102H23f, mRNA sequence
Length = 726
Score = 347 bits (175), Expect = 5e-094
Identities = 379/447 (84%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatac 65
|||||||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||
Sbjct: 209 aggttcttctcagcaggttgcggctcttcctaagcccagggtatccttatgaagaaatat 268
Query: 66 tgaggacattccacaaccaaaccgacaatgttatgtgctcatatctgcctctattcaatt 125
| |||||||||||||||||||| |||||||| |||||||| ||| | || |||||||||
Sbjct: 269 taaggacattccacaaccaaactgacaatgtcatgtgctcgtatttaccagtattcaatt 328
Query: 126 cattcaacttcactaaaggaggactaatacaactcaaccatggaaggcctcagccacttc 185
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 329 cattcaacttcactaaaggaggactgatacaactcaaccatggagggcctcaaccacttc 388
Query: 186 agtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaagctgcag 245
|||||| ||||| ||||| |||||||| ||||| || || ||||| || ||||||
Sbjct: 389 agtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggacactgcag 448
Query: 246 acacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgcaagtttg 305
| || || |||||||| || |||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 449 atacaccagggtggtattgtggacctaatttctataccacagatgtcctccgcaagtttg 508
Query: 306 ccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacgttgtgg 365
| | ||||||||| || ||||| || |||||||||||| ||||||| |||||| ||||
Sbjct: 509 caaagtcacagcttgattacattctaggcaagaacccacaaaagatgaactacgtcgtgg 568
Query: 366 gtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacg 425
|||| ||||| ||||| || ||||| |||| ||||| | || || || ||| | ||||
Sbjct: 569 gttttggaaagaagtaacccaagcgtgttcattacagaagggcatcaatcccttataacg 628
Query: 426 gcgtcaagtatgggtgcaaaggaggtt 452
| ||||| ||||| |||||||||||||
Sbjct: 629 gtgtcaaatatggatgcaaaggaggtt 655
>gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023G06f, mRNA sequence
Length = 815
Score = 323 bits (163), Expect = 7e-087
Identities = 379/451 (84%)
Strand = Plus / Plus
Query: 153 tacaactcaaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttg 212
||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| |||||||
Sbjct: 1 tacaactcaaccatggagggcctcaaccacttcagtacgtcgtcaatgcagcattccttg 60
Query: 213 cttctctatacagcgactatcttgaagctgcagacacgcctgggtggtactgcggaccta 272
| ||||| || || ||||| || ||||||| || || |||||||| || |||||||
Sbjct: 61 cctctctgtatgctgattatctggacactgcagatacaccagggtggtattgtggaccta 120
Query: 273 acttctacaccacagaagtcctccgcaagtttgccaggtcacagctcgactacatccttg 332
| ||||| |||||||| ||||||||||||||||| | ||||||||| || ||||| || |
Sbjct: 121 atttctataccacagatgtcctccgcaagtttgcaaagtcacagcttgattacattctag 180
Query: 333 gcaagaacccattgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcgcc 392
||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 181 gcaagaacccacaaaagatgagctacgtcgtgggttttggaaagaagtaccccaagcgtg 240
Query: 393 ctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtatgggtgcaaaggaggtt 452
|||||||||||| || || || ||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 241 ttcatcacagaggggcatcaatccctcataacggtgtcaaatatggatgcaaaggaggtt 300
Query: 453 acaagtggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctg 512
|| ||||| || | ||||| ||||||||||| ||||| |||||||||||||| ||||
Sbjct: 301 ttaaatggagagagtctaagaaagcaaaccctaatatcctcgtcggagcaatggttgctg 360
Query: 513 gccccgacaggcgtgatggctacaaagatgtccgcacgaactacaactacacggagccta 572
| || |||| || |||||||| ||||||| ||||||| || ||||| ||||| |||||||
Sbjct: 361 ggcctgacaagcatgatggcttcaaagatatccgcacaaattacaattacacagagccta 420
Query: 573 ctctcgcagcgaatgctggtctggttgcagc 603
|||| ||||| |||||||| |||||||||||
Sbjct: 421 ctcttgcagcaaatgctggcctggttgcagc 451
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 495 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 554
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 555 tcagcttggaaacc 568
>gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002G13f, mRNA sequence
Length = 850
Score = 287 bits (145), Expect = 4e-076
Identities = 355/425 (83%)
Strand = Plus / Plus
Query: 179 ccacttcagtacgctgtcaacgcagctttccttgcttctctatacagcgactatcttgaa 238
||||||||||||| ||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 3 ccacttcagtacgtcgtcaatgcagcattccttgcctctctgtatgctgattatctggac 62
Query: 239 gctgcagacacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgc 298
||||||| || || |||||||| || |||||||| ||||| |||||||| |||||||||
Sbjct: 63 actgcagatacaccagggtggtattgtggacctaatttctataccacagatgtcctccgc 122
Query: 299 aagtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctac 358
|||||||| | ||||||||| || ||||| || |||||||||||| ||||||||||||
Sbjct: 123 aagtttgcaaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctac 182
Query: 359 gttgtgggtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacct 418
|| |||||||| ||||| |||||||| ||||| |||||||||||| || || || |||
Sbjct: 183 gtcgtgggttttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccct 242
Query: 419 cacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggca 478
|| ||||| ||||| ||||| ||||||||||||| || ||||| || | ||||| |||
Sbjct: 243 cataacggtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagca 302
Query: 479 aaccctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaa 538
|||||||| ||||| |||||||||||||| ||||| || |||| || |||||||| ||||
Sbjct: 303 aaccctaatatcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttcaaa 362
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
||| ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 363 gatatccgcacaaattacaattacacagagcctactcttgcagcaaatgctggcctggtt 422
Query: 599 gcagc 603
|||||
Sbjct: 423 gcagc 427
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgccccc 696
|||||||||||||||||||| || |||| || |||||||| || |||||
Sbjct: 471 gataagaacaccatcttctcagcagttcccccaatgttcccgacaccccc 520
>gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 3', mRNA sequence
Length = 684
Score = 278 bits (140), Expect = 4e-073
Identities = 308/364 (84%)
Strand = Plus / Minus
Query: 240 ctgcagacacgcctgggtggtactgcggacctaacttctacaccacagaagtcctccgca 299
||||||| || || |||||||| || |||||||| ||||| |||||||| ||||||||||
Sbjct: 663 ctgcagatacaccagggtggtattgtggacctaatttctataccacagatgtcctccgca 604
Query: 300 agtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacg 359
||||||| | ||||||||| || ||||| || |||||||||||| |||||||||||||
Sbjct: 603 agtttgcaaagtcacagcttgattacattctaggcaagaacccacaaaagatgagctacg 544
Query: 360 ttgtgggtttcggaaacaagtacccgaagcgccctcatcacagaggcgcgtcgatacctc 419
| |||||||| ||||| |||||||| ||||| |||||||||||| || || || ||||
Sbjct: 543 tcgtgggttttggaaagaagtaccccaagcgtgttcatcacagaggggcatcaatccctc 484
Query: 420 acaacggcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaaggcaa 479
| ||||| ||||| ||||| ||||||||||||| || ||||| || | ||||| ||||
Sbjct: 483 ataacggtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaagcaa 424
Query: 480 accctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctacaaag 539
||||||| ||||| |||||||||||||| ||||| || |||| || |||||||| |||||
Sbjct: 423 accctaatatcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttcaaag 364
Query: 540 atgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggttg 599
|| ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| |||||||
Sbjct: 363 atatccgcacaaattacaattacacagagcctactcttgcagcaaatgctggcctggttg 304
Query: 600 cagc 603
||||
Sbjct: 303 cagc 300
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 256 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 197
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 196 tcagcttggaaacc 183
>gb|AV909996.1|AV909996 AV909996 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 5', mRNA sequence
Length = 253
Score = 216 bits (109), Expect = 1e-054
Identities = 213/248 (85%)
Strand = Plus / Plus
Query: 41 ccagggtacccttacgaagaaatactgaggacattccacaaccaaaccgacaatgttatg 100
|||||||| ||||| ||||||||| | |||||||||||||||||||| |||||||| |||
Sbjct: 4 ccagggtatccttatgaagaaatattaaggacattccacaaccaaactgacaatgtcatg 63
Query: 101 tgctcatatctgcctctattcaattcattcaacttcactaaaggaggactaatacaactc 160
||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64 tgctcatatttaccagtattcaattcattcaacttcactaaaggaggactgatacaactc 123
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
||||||||| ||||||| ||||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 124 aaccatggagggcctcaaccacttcagtacgtcgtcaatgcagcattccttgcctctctg 183
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttctac 280
|| || ||||| || ||||| | || || |||||||| || |||||||| |||||
Sbjct: 184 tatgctgattatctggacactgcanatacaccagggtggtattgtggacctaatttctat 243
Query: 281 accacaga 288
||||||||
Sbjct: 244 accacaga 251
>gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002L24f, mRNA sequence
Length = 831
Score = 194 bits (98), Expect = 4e-048
Identities = 260/314 (82%)
Strand = Plus / Plus
Query: 137 actaaaggaggactaatacaactcaaccatggaaggcctcagccacttcagtacgctgtc 196
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct: 19 actaaaggaggactgatacaactcaaccatggagggcctcaaccacttcagtacgtcgtc 78
Query: 197 aacgcagctttccttgcttctctatacagcgactatcttgaagctgcagacacgcctggg 256
|| ||||| |||||||| ||||| || || ||||| || ||||||| || || |||
Sbjct: 79 aatgcagcattccttgcctctctgtatgctgattatctggacactgcagatacaccaggg 138
Query: 257 tggtactgcggacctaacttctacaccacagaagtcctccgcaagtttgccaggtcacag 316
||||| || |||||||| ||||| ||||| | | |||||||||||||| | |||||||
Sbjct: 139 tggtattgtggacctaatttctataccacgggtgggctccgcaagtttgcaaagtcacag 198
Query: 317 ctcgactacatccttggcaagaacccattgaagatgagctacgttgtgggtttcggaaac 376
|| || ||||| || |||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 199 cttgattacattctaggcaagaacccacaaaagatgagctacgtcgtgggttttggaaag 258
Query: 377 aagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtat 436
|||||||| ||||| |||||||||||| || || || ||||| ||||| | ||| |||
Sbjct: 259 aagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggtggcaaatat 318
Query: 437 gggtgcaaaggagg 450
|| |||||||||||
Sbjct: 319 ggatgcaaaggagg 332
>gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 3', mRNA sequence
Length = 663
Score = 165 bits (83), Expect = 4e-039
Identities = 191/227 (84%)
Strand = Plus / Minus
Query: 377 aagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtat 436
|||||||| ||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 661 aagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggtgtcaaatat 602
Query: 437 gggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtc 496
|| ||||||||||||| || ||||| || | ||||| ||||||||||| ||||| |||
Sbjct: 601 ggatgcaaaggaggttttaaatggagagagtctaagaaagcaaaccctaatatcctcgtc 542
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
||||||||||| ||||| || |||| || |||||||| ||||||| ||||||| || |||
Sbjct: 541 ggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaattac 482
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 481 aattacacagagcctactcttgcagcaaatgctggcctggttgcagc 435
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 391 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 332
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 331 tcagcttggaaacc 318
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 78 gtgtgaagttcttttt-gtagaaatggtaccttt 46
>gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9a10 3', mRNA sequence
Length = 664
Score = 165 bits (83), Expect = 4e-039
Identities = 191/227 (84%)
Strand = Plus / Minus
Query: 377 aagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtat 436
|||||||| ||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 661 aagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggtgtcaaatat 602
Query: 437 gggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtc 496
|| ||||||||||||| || ||||| || | ||||| ||||||||||| ||||| |||
Sbjct: 601 ggatgcaaaggaggttttaaatggagagagtctaagaaagcaaaccctaatatcctcgtc 542
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
||||||||||| ||||| || |||| || |||||||| ||||||| ||||||| || |||
Sbjct: 541 ggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaattac 482
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 481 aattacacagagcctactcttgcagcaaatgctggcctggttgcagc 435
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 391 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 332
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 331 tcagcttggaaacc 318
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 78 gtgtgaagttcttttt-gtagaaatggtaccttt 46
>gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 3', mRNA sequence
Length = 663
Score = 165 bits (83), Expect = 4e-039
Identities = 191/227 (84%)
Strand = Plus / Minus
Query: 377 aagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgtcaagtat 436
|||||||| ||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 662 aagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggtgtcaaatat 603
Query: 437 gggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgtc 496
|| ||||||||||||| || ||||| || | ||||| ||||||||||| ||||| |||
Sbjct: 602 ggatgcaaaggaggttttaaatggagagagtctaagaaagcaaaccctaatatcctcgtc 543
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
||||||||||| ||||| || |||| || |||||||| ||||||| ||||||| || |||
Sbjct: 542 ggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaattac 483
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 482 aattacacagagcctactcttgcagcaaatgctggcctggttgcagc 436
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 392 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 333
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 332 tcagcttggaaacc 319
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 79 gtgtgaagttcttttt-gtagaaatggtaccttt 47
>gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I10 5', mRNA sequence
Length = 512
Score = 151 bits (76), Expect = 6e-035
Identities = 160/188 (85%)
Strand = Plus / Plus
Query: 416 cctcacaacggcgtcaagtatgggtgcaaaggaggttacaagtggagggacacaaagaag 475
||||| ||||| ||||| ||||| ||||||||||||| || ||||| || | |||||
Sbjct: 10 cctcataacggtgtcaaatatggatgcaaaggaggttttaaatggagagagtctaagaaa 69
Query: 476 gcaaaccctaacatccttgtcggagcaatggtggctggccccgacaggcgtgatggctac 535
||||||||||| ||||| |||||||||||||| ||||| || |||| || |||||||| |
Sbjct: 70 gcaaaccctaatatcctcgtcggagcaatggttgctgggcctgacaagcatgatggcttc 129
Query: 536 aaagatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctg 595
|||||| ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| |||
Sbjct: 130 aaagatatccgcacaaattacaattacacagagcctactcttgcagcaaatgctggcctg 189
Query: 596 gttgcagc 603
||||||||
Sbjct: 190 gttgcagc 197
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 241 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 300
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 301 tcagcttggaaacc 314
>gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 3', mRNA sequence
Length = 569
Score = 125 bits (63), Expect = 3e-027
Identities = 187/228 (82%), Gaps = 1/228 (0%)
Strand = Plus / Minus
Query: 377 aagtacccgaagcgccctcatcacagaggcgcgtcgatacctcacaacggcgt-caagta 435
|||||||| ||||| |||||||||||| || || || ||||| ||||| | ||| ||
Sbjct: 567 aagtaccccaagcgtgttcatcacagaggggcatcaatccctcataacggttttcaaata 508
Query: 436 tgggtgcaaaggaggttacaagtggagggacacaaagaaggcaaaccctaacatccttgt 495
||| | ||||||||||| || ||||| || | ||||| ||||||| ||| ||||| ||
Sbjct: 507 tggatncaaaggaggttttaaatggagagagtctaagaaagcaaaccntaatatcctcgt 448
Query: 496 cggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaacta 555
|||||||||||| ||||| || |||| || |||||||| ||||||| ||||||| || ||
Sbjct: 447 cggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaatta 388
Query: 556 caactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||| ||||| ||||||||||| ||||| |||||||| |||||| ||||
Sbjct: 387 caattacacagagcctactcttgcagcaaatgctggcctggttncagc 340
Score = 61.9 bits (31), Expect = 4e-008
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 296 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccnccgccg 237
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 236 tcagcttggaaacc 223
>gb|AV930114.1|AV930114 AV930114 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p12 3', mRNA sequence
Length = 539
Score = 101 bits (51), Expect = 5e-020
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
||||||||||| ||||| || |||| || |||||||| ||||||| ||||||| || |||
Sbjct: 539 ggagcaatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaattac 480
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 479 aattacacagagcctactcttgcagcaaatgctggcctggttgcagc 433
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 389 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 330
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 329 tcagcttggaaacc 316
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 76 gtgtgaagttcttttt-gtagaaatggtaccttt 44
>gb|AV930104.1|AV930104 AV930104 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17o24 3', mRNA sequence
Length = 540
Score = 95.6 bits (48), Expect = 3e-018
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 497 ggagcaatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactac 556
||||||||||| ||||| | |||| || |||||||| ||||||| ||||||| || |||
Sbjct: 540 ggagcaatggttgctgggcntgacaagcatgatggcttcaaagatatccgcacaaattac 481
Query: 557 aactacacggagcctactctcgcagcgaatgctggtctggttgcagc 603
|| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 480 aattacacagagcctactcttgcagcaaatgctggcctggttgcagc 434
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 390 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 331
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 330 tcagcttggaaacc 317
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 77 gtgtgaagttcttttt-gtagaaatggtaccttt 45
>gb|AV930113.1|AV930113 AV930113 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p11 3', mRNA sequence
Length = 522
Score = 91.7 bits (46), Expect = 5e-017
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 502 aatggtggctggccccgacaggcgtgatggctacaaagatgtccgcacgaactacaacta 561
|||||| ||||| || |||| || |||||||| ||||||| ||||||| || ||||| ||
Sbjct: 522 aatggttgctgggcctgacaagcatgatggcttcaaagatatccgcacaaattacaatta 463
Query: 562 cacggagcctactctcgcagcgaatgctggtctggttgcagc 603
||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 462 cacagagcctactcttgcagcaaatgctggcctggttgcagc 421
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 377 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 318
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 317 tcagcttggaaacc 304
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 64 gtgtgaagttcttttt-gtagaaatggtaccttt 32
>gb|BG418753.1|BG418753 HVSMEk0024E15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024E15f, mRNA sequence
Length = 879
Score = 63.9 bits (32), Expect = 1e-008
Identities = 138/167 (82%), Gaps = 5/167 (2%)
Strand = Plus / Plus
Query: 10 tcttctcagcaggttgagactcttcctaagtccagggtacccttacgaagaaatactgag 69
|||||||||||||||| | ||||||||||| ||| |||| |||| | || |||| | ||
Sbjct: 659 tcttctcagcaggttgcggctcttcctaagcccaaggtattcttatggaggaatattaag 718
Query: 70 gacattccacaaccaaaccgacaatgttatgt-gctcatatctgcctctattcaattcat 128
|||||||||| ||||||| ||| |||| |||| |||| || | || |||||||| ||
Sbjct: 719 gacattccac-accaaactgaccatgtcatgtggctc-gatttaccanaattcaatt-at 775
Query: 129 tcaacttcactaaaggaggactaatacaactcaaccatggaaggcct 175
||||||||||| ||| |||||| || |||||||||| ||||||||||
Sbjct: 776 tcaacttcacttaagaaggactgat-caactcaaccttggaaggcct 821
>gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_L24 5', mRNA sequence
Length = 620
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 457 gtggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggccc 516
|||||||||||| |||||| | |||||| ||||| |||| ||||| ||||||||||||||
Sbjct: 222 gtggagggacaccaagaagcccaaccctcacatcattgttggagctatggtggctggccc 281
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 650 aagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgccatca 709
||||||||||| |||||||| | || || |||||||| ||||||||||||| ||| ||
Sbjct: 406 aagaacaccatgttctctgctgtgccgccaatgttcccttcgcccccgccgcctccagca 465
Query: 710 gcatggaaaccata 723
||||||| |||||
Sbjct: 466 ccatggaagccata 479
>gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. vulgare cDNA clone HA15F07
5-PRIME, mRNA sequence
Length = 443
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 206 ttccttgcttctctatacagcgactatcttgaagctgcagacacgcctgggtggta 261
|||||||||||||| | ||| ||||||||||| |||||||| || |||||||||||
Sbjct: 232 ttccttgcttctctgttcagtgactatcttgaggctgcagatacccctgggtggta 287
>gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
3-PRIME, mRNA sequence
Length = 620
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 457 gtggagggacacaaagaaggcaaaccctaacatccttgtcggagcaatggtggctggccc 516
|||||||||||| |||||| | |||||| ||||| |||| ||||| ||||||||||||||
Sbjct: 457 gtggagggacaccaagaagcccaaccctcacatcattgttggagctatggtggctggccc 398
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 650 aagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgccatca 709
||||||||||| |||||||| | || || |||||||| ||||||||||||| ||| ||
Sbjct: 273 aagaacaccatgttctctgctgtgccgccaatgttcccttcgcccccgccgcctccagca 214
Query: 710 gcatggaaaccata 723
||||||| |||||
Sbjct: 213 ccatggaagccata 200
>gb|AL509770.1|AL509770 AL509770 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02N05u 3',
mRNA sequence
Length = 625
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
|||||||||||||||||||| || |||| || |||||||| || ||||| || |||||
Sbjct: 424 gataagaacaccatcttctcagcagttcccccaatgttcccgacacccccaccaccgccg 365
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 364 tcagcttggaaacc 351
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 111 gtgtgaagttcttttt-gtagaaatggtaccttt 79
>gb|AW982666.3|AW982666 HVSMEg0003O04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003O04f, mRNA sequence
Length = 898
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 6 aggttcttctcagcaggttgagactcttcctaagtccagggt 47
|||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 446 aggttcttctcagcaggttgcggctcttcctaagcccagggt 487
>gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D16 5', mRNA sequence
Length = 685
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 321 actacatccttggcaagaacccattgaagatgagctacgttgtgggtttcggaaacaagt 380
||||||||||||| | ||||| |||||||||||||||| ||||| | ||| || ||||
Sbjct: 615 actacatccttggggataacccgatgaagatgagctacgtggtggggtacggcaagaagt 674
Query: 381 acccgaagcg 390
||||||||||
Sbjct: 675 acccgaagcg 684
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 321 actacatccttggcaagaacccattgaagatgagctacgttgtgggtttcggaaacaagt 380
||||||||||||| | ||||| |||||||||||||||| ||||| | ||| || ||||
Sbjct: 106 actacatccttggggataacccgatgaagatgagctacgtggtggggtacggcaagaagt 165
Query: 381 acccgaagcg 390
||||||||||
Sbjct: 166 acccgaagcg 175
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 321 actacatccttggcaagaacccattgaagatgagctacgttgtgggtttcggaaacaagt 380
||||||||||||| | ||||| |||||||||||||||| ||||| | ||| || ||||
Sbjct: 156 actacatccttggggataacccgatgaagatgagctacgtggtggggtacggcaagaagt 215
Query: 381 acccgaagcg 390
||||||||||
Sbjct: 216 acccgaagcg 225
>gb|AL500279.1|AL500279 AL500279 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05N22r 3', mRNA sequence
Length = 503
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 647 gataagaacaccatcttctctgcgattcctccgatgttcccaacgcccccgccgccgcca 706
||||||||||||||||| || || |||| || |||||||| || ||||| || |||||
Sbjct: 438 gataagaacaccatcttttcagcagttcccccaatgttcccgacacccccaccaccgccg 379
Query: 707 tcagcatggaaacc 720
||||| ||||||||
Sbjct: 378 tcagcttggaaacc 365
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 125 gtgtgaagttcttttt-gtagaaatggtaccttt 93
>gb|AL511705.1|AL511705 AL511705 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08P04u 3',
mRNA sequence
Length = 431
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
|||||||||||||||| |||||||||||||||||
Sbjct: 121 gtgtgaagttcttttt-gtagaaatggtaccttt 89
>gb|AJ431974.1|AJ431974 AJ431974 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200020G05F1, mRNA sequence
Length = 349
Score = 52.0 bits (26), Expect = 4e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 968 gtgtgaagttcttttttgtagaaatggtaccttt 1001
||||||||||||||| ||||||||||||||||||
Sbjct: 254 gtgtgaagttctttt-tgtagaaatggtaccttt 286
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 345 tgaagatgagctacgttgtgggtttcggaaacaagtacccgaagcg 390
|||||||||||||||| ||||| | ||| || ||||||||||||||
Sbjct: 644 tgaagatgagctacgtggtggggtacggcaagaagtacccgaagcg 599
>gb|BI949643.1|BI949643 HVSMEl0015A22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015A22f, mRNA sequence
Length = 902
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 206 ttccttgcttctctatacagcgactatcttgaagctgcaga 246
|||||||||||||| | ||| ||||||||||| ||||||||
Sbjct: 615 ttccttgcttctctgttcagtgactatcttgaggctgcaga 655
>gb|CD662867.1|CD662867 UCRHV18_03bg02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03bg02, mRNA sequence
Length = 131
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 980 tttttgtagaaatggtaccttt 1001
||||||||||||||||||||||
Sbjct: 131 tttttgtagaaatggtaccttt 110
>gb|CA003964.1|CA003964 HS16C09r HS Hordeum vulgare subsp. vulgare cDNA clone HS16C09
5-PRIME, mRNA sequence
Length = 316
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 683 ttcccaacgcccccgccgccgcca 706
||||||||||| ||||||||||||
Sbjct: 236 ttcccaacgccgccgccgccgcca 213
>gb|CD240717.1|CD240717 LP10318 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-318
similar to H. vulgare mRNA for endo-1,4-beta-glucanase
Cel1, Accession No. AB040769, mRNA sequence
Length = 290
Score = 40.1 bits (20), Expect = 0.15
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 968 gtgtgaagttcttttttgtagaaatggt 995
||||||||||| ||||||||||||||||
Sbjct: 27 gtgtgaagttc-tttttgtagaaatggt 1
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,738
Number of Sequences: 312970
Number of extensions: 121738
Number of successful extensions: 38777
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38648
Number of HSP's gapped (non-prelim): 116
length of query: 1078
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1059
effective length of database: 169,188,109
effective search space: 179170207431
effective search space used: 179170207431
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)