BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa... 208 2e-052
gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-a... 208 2e-052
gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 ... 208 2e-052
gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA li... 208 2e-052
gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, red... 208 2e-052
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 208 2e-052
gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-a... 184 3e-045
gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA li... 184 3e-045
gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA li... 184 3e-045
gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA li... 184 3e-045
gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthe... 178 2e-043
gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA li... 157 7e-037
gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA li... 145 3e-033
gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA li... 129 2e-028
gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. v... 129 2e-028
gb|AV930114.1|AV930114 AV930114 K. Sato unpublished cDNA li... 113 1e-023
gb|AV930104.1|AV930104 AV930104 K. Sato unpublished cDNA li... 107 6e-022
gb|AV930113.1|AV930113 AV930113 K. Sato unpublished cDNA li... 103 9e-021
gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, n... 86 2e-015
gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. v... 86 2e-015
gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachi... 76 2e-012
gb|AL500279.1|AL500279 AL500279 Hordeum vulgare Barke etiol... 54 8e-006
gb|AL509770.1|AL509770 AL509770 Hordeum vulgare Barke devel... 54 8e-006
gb|AJ431974.1|AJ431974 AJ431974 S00002 Hordeum vulgare subs... 54 8e-006
gb|CD240717.1|CD240717 LP10318 Lemma/palea-enriched cDNA li... 54 8e-006
gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 ... 50 1e-004
gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA li... 44 0.007
gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthe... 40 0.12
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 40 0.12
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 40 0.12
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 40 0.12
gb|CV057601.1|CV057601 BNEL29f6 Barley EST endosperm librar... 40 0.12
gb|CV057678.1|CV057678 BNEL2E5 Barley EST endosperm library... 40 0.12
gb|AL511705.1|AL511705 AL511705 Hordeum vulgare Barke devel... 38 0.46
gb|BQ762791.1|BQ762791 EBro02_SQ006_I02_R root, 3 week, hyd... 38 0.46
gb|BU983704.1|BU983704 HA30L08r HA Hordeum vulgare subsp. v... 38 0.46
>gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023G06f, mRNA sequence
Length = 815
Score = 208 bits (105), Expect = 2e-052
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 461 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 402
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 401 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 342
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 341 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 282
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 281 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 222
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 221 tccaaaacccacgacgtagctcatctt 195
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 568 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 509
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 508 atggtgttctt 498
Score = 40.1 bits (20), Expect = 0.12
Identities = 78/96 (81%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||| | | |||
Sbjct: 753 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcaaaccgatac 695
Query: 225 agaaatagaagctctataagcttatgctgtccgctt 260
|||| ||||| |||| |||||||||| |||| ||||
Sbjct: 694 agaagtagaaactctgtaagcttatgttgtctgctt 659
>gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002G13f, mRNA sequence
Length = 850
Score = 208 bits (105), Expect = 2e-052
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 437 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 378
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 377 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 318
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 317 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 258
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 257 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 198
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 197 tccaaaacccacgacgtagctcatctt 171
Score = 40.1 bits (20), Expect = 0.12
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 390 ggtgtcggaaacattggagggatcgcagagaagatggtgttctt 433
|||||||| |||||||| || | || |||||||||||||||||
Sbjct: 517 ggtgtcgggaacattgggggaactgctgagaagatggtgttctt 474
>gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M02f, mRNA sequence
Length = 641
Score = 208 bits (105), Expect = 2e-052
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 492 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 433
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 432 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 373
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 372 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 313
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 312 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 253
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 252 tccaaaacccacgacgtagctcatctt 226
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||| | |||||||| || | || ||||||
Sbjct: 599 ggtttccaagctgacggcggtggtgggggtgtcaggaacattgggggaactgctgagaag 540
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 539 atggtgttctt 529
>gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 3', mRNA sequence
Length = 684
Score = 208 bits (105), Expect = 2e-052
Identities = 226/267 (84%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 290 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 349
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 350 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 409
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 410 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 469
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 470 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 529
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 530 tccaaaacccacgacgtagctcatctt 556
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 183 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 242
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 243 atggtgttctt 253
>gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_F03 5', mRNA sequence
Length = 499
Score = 208 bits (105), Expect = 2e-052
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 486 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 427
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 426 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 367
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 366 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 307
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 306 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 247
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 246 tccaaaacccacgacgtagctcatctt 220
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 208 bits (105), Expect = 2e-052
Identities = 226/267 (84%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 1941 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 1882
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 1881 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 1822
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 1821 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 1762
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 1761 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 1702
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 1701 tccaaaacccacgacgtagctcatctt 1675
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 2293 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 2235
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 2234 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 2177
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 2048 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 1989
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 1988 atggtgttctt 1978
>gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004M14f, mRNA sequence
Length = 562
Score = 184 bits (93), Expect = 3e-045
Identities = 223/267 (83%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| || |||| |||| ||||| ||||| ||||| ||||||| |||||| |||||
Sbjct: 537 agaaatcaatgttgcacccaggccagcatttgctgcaagagtaggctttgtgtaattgta 478
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 477 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 418
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 417 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 358
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
||||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 357 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 298
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||||||| |||||||||||||
Sbjct: 297 tccaaaacccacgacgtagctcatctt 271
>gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 3', mRNA sequence
Length = 663
Score = 184 bits (93), Expect = 3e-045
Identities = 201/237 (84%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 425 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 484
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 485 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 544
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 545 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 604
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtactt 706
||||| ||||||||||| || || || |||||||| ||| ||||| ||||||||
Sbjct: 605 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtactt 661
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 318 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 377
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 378 atggtgttctt 388
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 133 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 191
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 192 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 249
>gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9a10 3', mRNA sequence
Length = 664
Score = 184 bits (93), Expect = 3e-045
Identities = 201/237 (84%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 425 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 484
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 485 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 544
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 545 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 604
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtactt 706
||||| ||||||||||| || || || |||||||| ||| ||||| ||||||||
Sbjct: 605 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtactt 661
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 318 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 377
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 378 atggtgttctt 388
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 133 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 191
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 192 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 249
>gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 3', mRNA sequence
Length = 663
Score = 184 bits (93), Expect = 3e-045
Identities = 201/237 (84%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 426 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 485
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 486 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 545
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 546 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 605
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtactt 706
||||| ||||||||||| || || || |||||||| ||| ||||| ||||||||
Sbjct: 606 tttgacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtactt 662
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 319 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 378
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 379 atggtgttctt 389
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 134 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 192
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 193 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 250
>gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I10 5', mRNA sequence
Length = 512
Score = 178 bits (90), Expect = 2e-043
Identities = 171/198 (86%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 207 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 148
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 147 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 88
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||||||||||| ||||| | || |||||||| |||||||||||||||||||
Sbjct: 87 gaggatattagggtttgctttcttagactctctccatttaaaacctcctttgcatccata 28
Query: 650 cttgacgccgttatgagg 667
||||| |||||||||||
Sbjct: 27 tttgacaccgttatgagg 10
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 499 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 441
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 440 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 383
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 314 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 255
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 254 atggtgttctt 244
>gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 5', mRNA sequence
Length = 607
Score = 157 bits (79), Expect = 7e-037
Identities = 185/221 (83%)
Strand = Plus / Minus
Query: 516 tctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagcc 575
|||||||| ||||| || ||||||| ||||||| |||| ||| || ||||||| |||||
Sbjct: 607 tctgtgtaattgtaatttgtgcggatatctttgaagccatcatgcttgtcaggcccagca 548
Query: 576 accattgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacct 635
||||||||||| || ||||| ||||||||||| ||||| | || |||||||| |||||
Sbjct: 547 accattgctccgacgaggatattagggtttgctttcttagactctctccatttaaaacct 488
Query: 636 cctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgc 695
|||||||||||||| ||||| ||||||||||| || || || |||||||| ||| |||
Sbjct: 487 cctttgcatccatatttgacaccgttatgagggattgatgcccctctgtgatgaacacgc 428
Query: 696 ttcgggtacttgtttncgaaacccacancgtagctcatctt 736
|| |||||||| ||| | |||||||| |||||||||||||
Sbjct: 427 ttggggtacttctttccaaaacccacgacgtagctcatctt 387
>gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 3', mRNA sequence
Length = 569
Score = 145 bits (73), Expect = 3e-033
Identities = 197/238 (82%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| ||||| |||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 330 agaaatcaatgctgnaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 389
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||||||| ||
Sbjct: 390 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctccgac 449
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| ||| ||||||| ||||| | || |||||||| ||||||||||| |||||||
Sbjct: 450 gaggatattanggtttgctttcttagactctctccatttaaaacctcctttgnatccata 509
Query: 650 cttg-acgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtactt 706
||| | ||||||||||| || || || |||||||| ||| ||||| ||||||||
Sbjct: 510 tttgaaaaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtactt 567
Score = 56.0 bits (28), Expect = 2e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 223 ggtttccaagctgacggcggnggtgggggtgtcgggaacattgggggaactgctgagaag 282
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 283 atggtgttctt 293
>gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 5', mRNA sequence
Length = 507
Score = 129 bits (65), Expect = 2e-028
Identities = 147/175 (84%)
Strand = Plus / Minus
Query: 562 tgtcagggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccc 621
||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| | || |
Sbjct: 493 tgtcaggcccagcaaccattgctccgacgaggatattagggtttgctttcttagactctc 434
Query: 622 tccatttgtaacctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctc 681
||||||| ||||||||||||||||||| ||||| ||||||||||| || || || ||||
Sbjct: 433 tccatttaaaacctcctttgcatccatatttgacaccgttatgagggattgatgcccctc 374
Query: 682 tgtggtgagggcgcttcgggtacttgtttncgaaacccacancgtagctcatctt 736
|||| ||| ||||| |||||||| ||| | |||||||| |||||||||||||
Sbjct: 373 tgtgatgaacacgcttggggtacttctttccaaaacccacgacgtagctcatctt 319
>gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E02
5-PRIME, mRNA sequence
Length = 583
Score = 129 bits (65), Expect = 2e-028
Identities = 147/175 (84%)
Strand = Plus / Minus
Query: 562 tgtcagggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccc 621
||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| | || |
Sbjct: 570 tgtcaggcccagcaaccattgctccgacgaggatattagggtttgctttcttagactctc 511
Query: 622 tccatttgtaacctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctc 681
||||||| ||||||||||||||||||| ||||| ||||||||||| || || || ||||
Sbjct: 510 tccatttaaaacctcctttgcatccatatttgacaccgttatgagggattgatgcccctc 451
Query: 682 tgtggtgagggcgcttcgggtacttgtttncgaaacccacancgtagctcatctt 736
|||| ||| ||||| |||||||| ||| | |||||||| |||||||||||||
Sbjct: 450 tgtgatgaacacgcttggggtacttctttccaaaacccacgacgtagctcatctt 396
>gb|AV930114.1|AV930114 AV930114 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p12 3', mRNA sequence
Length = 539
Score = 113 bits (57), Expect = 1e-023
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 423 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 482
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctcc 586
|| ||||||| ||||||| |||| ||| || ||||||| ||||| |||||||||||
Sbjct: 483 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccattgctcc 539
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 316 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 375
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 376 atggtgttctt 386
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 131 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 189
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 190 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 247
>gb|AV930104.1|AV930104 AV930104 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17o24 3', mRNA sequence
Length = 540
Score = 107 bits (54), Expect = 6e-022
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 424 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 483
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctcc 586
|| ||||||| ||||||| |||| ||| || ||||| | ||||| |||||||||||
Sbjct: 484 atttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 377 atggtgttctt 387
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 132 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 190
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 191 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 248
>gb|AV930113.1|AV930113 AV930113 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p11 3', mRNA sequence
Length = 522
Score = 103 bits (52), Expect = 9e-021
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||| |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 411 agaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgta 470
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccatt 581
|| ||||||| ||||||| |||| ||| || ||||||| ||||| ||||||
Sbjct: 471 atttgtgcggatatctttgaagccatcatgcttgtcaggcccagcaaccatt 522
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 304 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 363
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 364 atggtgttctt 374
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 119 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 177
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 178 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 235
>gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_L24 5', mRNA sequence
Length = 620
Score = 85.7 bits (43), Expect = 2e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 483 gcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtgcggaca 542
||||| |||||||| || |||| ||||| || |||||||||||| |||| | ||||
Sbjct: 365 gcaactagaccagcattgcccgctagggttggttctgtgtagttgcggttctttcggatg 306
Query: 543 tctttgtagccgtcacgcctgtcagggccagccaccattgctccaacaaggatgttaggg 602
|||||| | |||||| | | ||||||||||||||||| |||||||||| ||||| ||||
Sbjct: 305 tctttgaacccgtcatggcgatcagggccagccaccatagctccaacaatgatgtgaggg 246
Query: 603 tttgccttcttcgtgtccctcca 625
|| | |||||| |||||||||||
Sbjct: 245 ttgggcttcttggtgtccctcca 223
Score = 42.1 bits (21), Expect = 0.029
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 360 tatggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagag 419
||||| ||||||| || ||| |||||||| || | || |||||||| || | ||||||
Sbjct: 479 tatggcttccatggtgctggaggcggcgggggcgaagggaacattggcggcacagcagag 420
Query: 420 aagatggtgttcttgtc 436
|| ||||||||||||||
Sbjct: 419 aacatggtgttcttgtc 403
>gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
3-PRIME, mRNA sequence
Length = 620
Score = 85.7 bits (43), Expect = 2e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 483 gcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtgcggaca 542
||||| |||||||| || |||| ||||| || |||||||||||| |||| | ||||
Sbjct: 314 gcaactagaccagcattgcccgctagggttggttctgtgtagttgcggttctttcggatg 373
Query: 543 tctttgtagccgtcacgcctgtcagggccagccaccattgctccaacaaggatgttaggg 602
|||||| | |||||| | | ||||||||||||||||| |||||||||| ||||| ||||
Sbjct: 374 tctttgaacccgtcatggcgatcagggccagccaccatagctccaacaatgatgtgaggg 433
Query: 603 tttgccttcttcgtgtccctcca 625
|| | |||||| |||||||||||
Sbjct: 434 ttgggcttcttggtgtccctcca 456
Score = 42.1 bits (21), Expect = 0.029
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 360 tatggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagag 419
||||| ||||||| || ||| |||||||| || | || |||||||| || | ||||||
Sbjct: 200 tatggcttccatggtgctggaggcggcgggggcgaagggaacattggcggcacagcagag 259
Query: 420 aagatggtgttcttgtc 436
|| ||||||||||||||
Sbjct: 260 aacatggtgttcttgtc 276
>gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002L24f, mRNA sequence
Length = 831
Score = 75.8 bits (38), Expect = 2e-012
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 633 cctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgaggg 692
||||||||||||||||| ||| | ||||||||||| || || || |||||||| |||
Sbjct: 332 cctcctttgcatccatatttgccaccgttatgagggattgatgcccctctgtgatgaaca 273
Query: 693 cgcttcgggtacttgtttncgaaacccacancgtagctcatctt 736
||||| |||||||| ||| | |||||||| |||||||||||||
Sbjct: 272 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 229
>gb|AL500279.1|AL500279 AL500279 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05N22r 3', mRNA sequence
Length = 503
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 180 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 238
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 239 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 296
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || || |||
Sbjct: 365 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgaaaag 424
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 425 atggtgttctt 435
>gb|AL509770.1|AL509770 AL509770 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02N05u 3',
mRNA sequence
Length = 625
Score = 54.0 bits (27), Expect = 8e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 363 ggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaag 422
|||||||| ||||| ||||| || || |||||||| |||||||| || | || ||||||
Sbjct: 351 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 410
Query: 423 atggtgttctt 433
|||||||||||
Sbjct: 411 atggtgttctt 421
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 166 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 224
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 225 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 282
>gb|AJ431974.1|AJ431974 AJ431974 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200020G05F1, mRNA sequence
Length = 349
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 199 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 141
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 140 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 83
>gb|CD240717.1|CD240717 LP10318 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-318
similar to H. vulgare mRNA for endo-1,4-beta-glucanase
Cel1, Accession No. AB040769, mRNA sequence
Length = 290
Score = 54.0 bits (27), Expect = 8e-006
Identities = 98/119 (82%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| ||| ||| ||||||| || |||||| ||||| |||||| | |||
Sbjct: 82 gcacacaacttccagtccatggttgacagatga-tttataatgatccgtcataccgatac 140
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgta 283
|||| ||||| |||| |||||||||| |||| ||||| ||||| ||| ||||||||||
Sbjct: 141 agaagtagaaactctgtaagcttatgttgtctgcttt-ctgtttatggtctttgctgta 198
>gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102H23f, mRNA sequence
Length = 726
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 631 aacctcctttgcatccatacttgacgccgttat 663
||||||||||||||||||| ||||| |||||||
Sbjct: 655 aacctcctttgcatccatatttgacaccgttat 623
>gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 5', mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.007
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 693 cgcttcgggtacttgtttncgaaacccacancgtagctcatctt 736
||||| |||||||| ||| | |||||||| |||||||||||||
Sbjct: 588 cgcttggggtacttctttccaaaacccacgacgtagctcatctt 545
>gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D16 5', mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.12
Identities = 39/46 (84%)
Strand = Plus / Minus
Query: 693 cgcttcgggtacttgtttncgaaacccacancgtagctcatcttca 738
|||||||||||||| || || | ||||| |||||||||||||||
Sbjct: 684 cgcttcgggtacttcttgccgtaccccaccacgtagctcatcttca 639
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.12
Identities = 39/46 (84%)
Strand = Plus / Minus
Query: 693 cgcttcgggtacttgtttncgaaacccacancgtagctcatcttca 738
|||||||||||||| || || | ||||| |||||||||||||||
Sbjct: 175 cgcttcgggtacttcttgccgtaccccaccacgtagctcatcttca 130
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.12
Identities = 39/46 (84%)
Strand = Plus / Minus
Query: 693 cgcttcgggtacttgtttncgaaacccacancgtagctcatcttca 738
|||||||||||||| || || | ||||| |||||||||||||||
Sbjct: 225 cgcttcgggtacttcttgccgtaccccaccacgtagctcatcttca 180
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.12
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 693 cgcttcgggtacttgtttncgaaacccacancgtagctcatcttca 738
|||||||||||||| || || | ||||| |||||||||||||||
Sbjct: 599 cgcttcgggtacttcttgccgtaccccaccacgtagctcatcttca 644
>gb|CV057601.1|CV057601 BNEL29f6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL29f6 5' similar to Unknown
Function, mRNA sequence
Length = 193
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 374 tgatggcggcggcggcggtg 393
||||||||||||||||||||
Sbjct: 103 tgatggcggcggcggcggtg 84
>gb|CV057678.1|CV057678 BNEL2E5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL2E5 5' similar to Unknown Function, mRNA
sequence
Length = 193
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 374 tgatggcggcggcggcggtg 393
||||||||||||||||||||
Sbjct: 103 tgatggcggcggcggcggtg 84
>gb|AL511705.1|AL511705 AL511705 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08P04u 3',
mRNA sequence
Length = 431
Score = 38.2 bits (19), Expect = 0.46
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 390 ggtgtcggaaacattggagggatcgcagagaagatggtgttct 432
|||||||| |||||||| || | || ||||||||||||||||
Sbjct: 389 ggtgtcgggaacattgggggaactgctgagaagatggtgttct 431
>gb|BQ762791.1|BQ762791 EBro02_SQ006_I02_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_I02 5', mRNA sequence
Length = 721
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 375 gatggcggcggcggcggtg 393
|||||||||||||||||||
Sbjct: 319 gatggcggcggcggcggtg 337
>gb|BU983704.1|BU983704 HA30L08r HA Hordeum vulgare subsp. vulgare cDNA clone HA30L08
5-PRIME, mRNA sequence
Length = 531
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 cggcggcggcggtgtcgga 398
|||||||||||||||||||
Sbjct: 42 cggcggcggcggtgtcgga 24
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,003
Number of Sequences: 312970
Number of extensions: 128003
Number of successful extensions: 56700
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 56597
Number of HSP's gapped (non-prelim): 105
length of query: 845
length of database: 175,134,539
effective HSP length: 19
effective length of query: 826
effective length of database: 169,188,109
effective search space: 139749378034
effective search space used: 139749378034
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)