BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedl... 383 e-105
gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, wat... 383 e-105
gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, wat... 383 e-105
emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenyl... 383 e-105
gb|BQ469057.1|BQ469057 HM03D09r HM Hordeum vulgare subsp. v... 337 4e-091
gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedl... 327 4e-088
gb|BG414191.1|BG414191 HVSMEk0001A07f Hordeum vulgare testa... 319 9e-086
gb|BI956268.1|BI956268 HVSMEn0001M16f Hordeum vulgare rachi... 307 3e-082
gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA li... 307 3e-082
gb|BI956808.1|BI956808 HVSMEn0005G21f Hordeum vulgare rachi... 289 8e-077
gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA li... 280 8e-074
gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA li... 280 8e-074
gb|BI959802.1|BI959802 HVSMEn0021J20f Hordeum vulgare rachi... 266 1e-069
gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA li... 264 4e-069
gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachi... 260 7e-068
gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA li... 260 7e-068
gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA li... 260 7e-068
gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA li... 260 7e-068
gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA li... 260 7e-068
gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. v... 260 7e-068
gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA li... 254 4e-066
gb|AL505275.1|AL505275 AL505275 Hordeum vulgare Barke roots... 248 3e-064
gb|BM372199.2|BM372199 EBro03_SQ004_E20_R root, 3 week, wat... 246 1e-063
gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DA... 244 4e-063
gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots... 240 6e-062
gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Li... 238 3e-061
gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots... 238 3e-061
gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots... 238 3e-061
gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots... 238 3e-061
gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots... 238 3e-061
gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots... 238 3e-061
gb|AL503927.1|AL503927 AL503927 Hordeum vulgare Barke roots... 238 3e-061
gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachi... 238 3e-061
gb|BF259754.3|BF259754 HVSMEf0020C19f Hordeum vulgare seedl... 238 3e-061
gb|AV931622.1|AV931622 AV931622 K. Sato unpublished cDNA li... 238 3e-061
gb|BJ452093.1|BJ452093 BJ452093 K. Sato unpublished cDNA li... 238 3e-061
gb|BJ465265.1|BJ465265 BJ465265 K. Sato unpublished cDNA li... 238 3e-061
gb|BJ468508.1|BJ468508 BJ468508 K. Sato unpublished cDNA li... 238 3e-061
gb|BQ661371.1|BQ661371 HM03D09u HM Hordeum vulgare subsp. v... 238 3e-061
gb|BQ664513.1|BQ664513 HV03K13u HV Hordeum vulgare subsp. v... 238 3e-061
gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA li... 236 1e-060
gb|AV927824.1|AV927824 AV927824 K. Sato unpublished cDNA li... 232 2e-059
gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachi... 222 2e-056
gb|BE558376.3|BE558376 HV_CEb0017H01f Hordeum vulgare seedl... 218 2e-055
gb|BF628845.2|BF628845 HVSMEb0008N10f Hordeum vulgare seedl... 210 6e-053
gb|BI957553.1|BI957553 HVSMEn0010B19f Hordeum vulgare rachi... 190 5e-047
gb|AV926975.1|AV926975 AV926975 K. Sato unpublished cDNA li... 190 5e-047
gb|AL502996.1|AL502996 AL502996 Hordeum vulgare Barke roots... 186 8e-046
gb|AL501309.1|AL501309 AL501309 Hordeum vulgare Barke roots... 184 3e-045
gb|AL505417.1|AL505417 AL505417 Hordeum vulgare Barke roots... 184 3e-045
gb|BI957512.1|BI957512 HVSMEn0009P04f Hordeum vulgare rachi... 182 1e-044
gb|BI957636.1|BI957636 HVSMEn0010H09f Hordeum vulgare rachi... 176 8e-043
gb|BI959811.1|BI959811 HVSMEn0021K21f Hordeum vulgare rachi... 176 8e-043
gb|BI960030.1|BI960030 HVSMEn0022P01f Hordeum vulgare rachi... 176 8e-043
gb|BM816193.1|BM816193 HC109D04_T3.ab1 HC Hordeum vulgare s... 176 8e-043
gb|BI959619.1|BI959619 HVSMEn0020H03f Hordeum vulgare rachi... 170 5e-041
gb|AV923115.1|AV923115 AV923115 K. Sato unpublished cDNA li... 170 5e-041
gb|AV926974.1|AV926974 AV926974 K. Sato unpublished cDNA li... 170 5e-041
gb|BI959468.1|BI959468 HVSMEn0019M15f Hordeum vulgare rachi... 168 2e-040
gb|BE214612.2|BE214612 HV_CEb0003P13f Hordeum vulgare seedl... 168 2e-040
gb|AV925745.1|AV925745 AV925745 K. Sato unpublished cDNA li... 168 2e-040
gb|BM372206.2|BM372206 EBro03_SQ004_F04_R root, 3 week, wat... 168 2e-040
gb|BU988288.1|BU988288 HF17D09r HF Hordeum vulgare subsp. v... 168 2e-040
gb|AL502555.1|AL502555 AL502555 Hordeum vulgare Barke roots... 163 1e-038
gb|BI958293.1|BI958293 HVSMEn0014E11f Hordeum vulgare rachi... 163 1e-038
gb|BI958535.1|BI958535 HVSMEn0015H19f Hordeum vulgare rachi... 163 1e-038
gb|BM816192.1|BM816192 HC110D06_T3.ab1 HC Hordeum vulgare s... 157 7e-037
gb|BF254228.2|BF254228 HVSMEf0003G02f Hordeum vulgare seedl... 155 3e-036
gb|BG415885.2|BG415885 HVSMEk0008K04f Hordeum vulgare testa... 155 3e-036
gb|AL504786.1|AL504786 AL504786 Hordeum vulgare Barke roots... 135 3e-030
gb|BI959878.1|BI959878 HVSMEn0022D03f Hordeum vulgare rachi... 121 4e-026
gb|BF254448.3|BF254448 HVSMEf0004A20f Hordeum vulgare seedl... 119 2e-025
gb|AV926549.1|AV926549 AV926549 K. Sato unpublished cDNA li... 109 2e-022
gb|BQ765736.1|BQ765736 EBro03_SQ008_D02_R root, 3 week, wat... 101 4e-020
gb|BQ763018.1|BQ763018 EBro02_SQ006_L19_R root, 3 week, hyd... 96 2e-018
gb|AV926550.1|AV926550 AV926550 K. Sato unpublished cDNA li... 94 9e-018
gb|BF265906.3|BF265906 HV_CEa0013K09f Hordeum vulgare seedl... 92 4e-017
gb|AL501343.1|AL501343 AL501343 Hordeum vulgare Barke roots... 90 1e-016
gb|BI959268.1|BI959268 HVSMEn0019A02f Hordeum vulgare rachi... 64 8e-009
gb|BG310118.1|BG310118 HVSMEc0016N14f Hordeum vulgare seedl... 60 1e-007
gb|BI957141.1|BI957141 HVSMEn0007L14f Hordeum vulgare rachi... 60 1e-007
gb|AV913531.1|AV913531 AV913531 K. Sato unpublished cDNA li... 60 1e-007
gb|BJ467713.1|BJ467713 BJ467713 K. Sato unpublished cDNA li... 60 1e-007
gb|BI778700.2|BI778700 EBro01_SQ001_C06_R root, 3 week, hyd... 60 1e-007
gb|BI779552.2|BI779552 EBro01_SQ004_G11_R root, 3 week, hyd... 60 1e-007
gb|BQ766648.1|BQ766648 EBro08_SQ006_A20_R root, 3 week, dro... 60 1e-007
gb|BQ767318.1|BQ767318 EBro08_SQ008_F18_R root, 3 week, dro... 60 1e-007
gb|BQ768383.1|BQ768383 EBro08_SQ011_F13_R root, 3 week, dro... 60 1e-007
gb|BU989823.1|BU989823 HF22M18r HF Hordeum vulgare subsp. v... 60 1e-007
gb|BU990169.1|BU990169 HF24E14r HF Hordeum vulgare subsp. v... 60 1e-007
gb|BU990224.1|BU990224 HF24H03r HF Hordeum vulgare subsp. v... 60 1e-007
gb|CB881918.1|CB881918 HM11E17w HM Hordeum vulgare subsp. v... 60 1e-007
gb|CB882049.1|CB882049 HM11L11w HM Hordeum vulgare subsp. v... 60 1e-007
gb|BJ464895.1|BJ464895 BJ464895 K. Sato unpublished cDNA li... 54 8e-006
gb|BG343667.2|BG343667 HVSMEg0006C21f Hordeum vulgare pre-a... 52 3e-005
gb|AV928881.1|AV928881 AV928881 K. Sato unpublished cDNA li... 52 3e-005
gb|BQ762501.1|BQ762501 EBro02_SQ004_F04 _R root, 3 week, hy... 52 3e-005
gb|BU973291.1|BU973291 HB24G20r BC Hordeum vulgare subsp. v... 52 3e-005
gb|BU996801.1|BU996801 HM14M22r HM Hordeum vulgare subsp. v... 52 3e-005
gb|BM443270.1|BM443270 EBro02_SQ003_F17_R root, 3 week, hyd... 50 1e-004
gb|BQ767013.1|BQ767013 EBro08_SQ007_A24_R root, 3 week, dro... 50 1e-004
gb|BI959927.1|BI959927 HVSMEn0022G20f Hordeum vulgare rachi... 48 5e-004
gb|AL500991.1|AL500991 AL500991 Hordeum vulgare Barke roots... 46 0.002
gb|AL501962.1|AL501962 AL501962 Hordeum vulgare Barke roots... 46 0.002
gb|AL503163.1|AL503163 AL503163 Hordeum vulgare Barke roots... 46 0.002
gb|BI958930.1|BI958930 HVSMEn0017E12f Hordeum vulgare rachi... 46 0.002
gb|AV918830.1|AV918830 AV918830 K. Sato unpublished cDNA li... 46 0.002
gb|BQ662656.1|BQ662656 HS03H24u HS Hordeum vulgare subsp. v... 46 0.002
gb|BI777236.2|BI777236 EBro03_SQ002_I15_R root, 3 week, wat... 46 0.002
gb|BQ756566.1|BQ756566 EBem09_SQ003_B12_R embryo, 1 Day ger... 46 0.002
gb|BQ760542.1|BQ760542 EBro03_SQ001_F05_R root, 3 week, wat... 46 0.002
gb|CB858981.1|CB858981 HI08O15w HI Hordeum vulgare subsp. v... 46 0.002
gb|BF621580.1|BF621580 HVSMEa0011H19f Hordeum vulgare seedl... 44 0.008
gb|BI947758.1|BI947758 HVSMEl0006M12f Hordeum vulgare spike... 44 0.008
gb|AV921319.1|AV921319 AV921319 K. Sato unpublished cDNA li... 44 0.008
gb|BJ468382.1|BJ468382 BJ468382 K. Sato unpublished cDNA li... 44 0.008
gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, co... 44 0.008
gb|BE060404.2|BE060404 HVSMEg0012D12f Hordeum vulgare pre-a... 42 0.031
gb|BI779168.2|BI779168 EBro01_SQ003_D08_R root, 3 week, hyd... 42 0.031
gb|CA030209.1|CA030209 HX06G11r HX Hordeum vulgare subsp. v... 42 0.031
gb|BF260697.2|BF260697 HVSMEf0022L07f Hordeum vulgare seedl... 40 0.12
gb|BI957150.1|BI957150 HVSMEn0007M14f Hordeum vulgare rachi... 40 0.12
gb|BQ662608.1|BQ662608 HS03E04u HS Hordeum vulgare subsp. v... 40 0.12
gb|BQ662719.1|BQ662719 HS03N15u HS Hordeum vulgare subsp. v... 40 0.12
gb|BQ662831.1|BQ662831 HS04F19u HS Hordeum vulgare subsp. v... 40 0.12
gb|BQ754001.1|BQ754001 EBca01_SQ002_I06_R carpel, pre-anthe... 40 0.12
gb|CA000735.1|CA000735 HS07D24u HS Hordeum vulgare subsp. v... 40 0.12
gb|CA004951.1|CA004951 HU12O11u HU Hordeum vulgare subsp. v... 40 0.12
gb|AL502625.1|AL502625 AL502625 Hordeum vulgare Barke roots... 38 0.48
gb|AL503142.1|AL503142 AL503142 Hordeum vulgare Barke roots... 38 0.48
gb|BE602075.1|BE602075 HVSMEh0102E23f Hordeum vulgare 5-45 ... 38 0.48
gb|BF258018.2|BF258018 HVSMEf0014I06f Hordeum vulgare seedl... 38 0.48
gb|BE196689.2|BE196689 HVSMEh0092P21f Hordeum vulgare 5-45 ... 38 0.48
gb|BI955715.1|BI955715 HVSMEm0024C22f Hordeum vulgare green... 38 0.48
gb|BE214036.1|BE214036 HV_CEb0001P14f Hordeum vulgare seedl... 38 0.48
gb|BG416204.1|BG416204 HVSMEk0010G14f Hordeum vulgare testa... 38 0.48
gb|BE214374.2|BE214374 HV_CEb0003E07f Hordeum vulgare seedl... 38 0.48
gb|BM816019.1|BM816019 HC03C04_T3.ab1 HC Hordeum vulgare su... 38 0.48
gb|AJ435172.1|AJ435172 AJ435172 S00002 Hordeum vulgare subs... 38 0.48
gb|AJ462386.1|AJ462386 AJ462386 S00002 Hordeum vulgare subs... 38 0.48
gb|BQ757219.1|BQ757219 EBem10_SQ003_F14_R embryo, 2 Day ger... 38 0.48
gb|BQ760615.1|BQ760615 EBro03_SQ002_H19_R root, 3 week, wat... 38 0.48
emb|Z49145.1|HVPAL2MR H.vulgare partial PAL mRNA for phenyl... 38 0.48
emb|X60173.1|HVNAR7 Hordeum vulgare nar7 gene for NAD(P)H-b... 38 0.48
gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene lo... 38 0.48
>gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K19f, mRNA sequence
Length = 773
Score = 383 bits (193), Expect = e-105
Identities = 448/532 (84%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 91 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 150
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 151 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 210
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 211 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 269
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 270 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 329
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 330 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 389
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 390 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 449
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 450 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 509
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
||||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||
Sbjct: 510 gtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcga 569
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 570 ccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 621
>gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_L15 5', mRNA sequence
Length = 615
Score = 383 bits (193), Expect = e-105
Identities = 448/532 (84%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 56 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 115
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 116 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 175
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 176 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 234
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 235 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 294
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 295 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 354
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 355 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 414
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 415 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 474
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
||||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||
Sbjct: 475 gtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcga 534
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 535 ccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 586
>gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_E16 5', mRNA sequence
Length = 625
Score = 383 bits (193), Expect = e-105
Identities = 448/532 (84%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 68 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 127
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 128 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 187
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 188 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 246
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 247 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 306
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 307 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 366
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 367 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 426
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 427 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 486
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
||||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||
Sbjct: 487 gtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcga 546
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 547 ccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 598
>emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1831 bp)
Length = 1831
Score = 383 bits (193), Expect = e-105
Identities = 448/532 (84%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 960 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 1019
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1020 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 1079
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 1080 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 1138
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 1139 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 1198
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 1199 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 1258
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 1259 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 1318
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 1319 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 1378
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
||||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||
Sbjct: 1379 gtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcga 1438
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 1439 ccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 1490
>gb|BQ469057.1|BQ469057 HM03D09r HM Hordeum vulgare subsp. vulgare cDNA clone HM03D09
5-PRIME, mRNA sequence
Length = 535
Score = 337 bits (170), Expect = 4e-091
Identities = 416/497 (83%), Gaps = 7/497 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 40 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 99
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 100 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 159
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 160 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 218
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 219 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 278
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 279 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 338
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 339 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 398
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 399 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 458
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
||||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||
Sbjct: 459 gtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcga 518
Query: 485 ccccatgctcgagtgcc 501
|||||||||||||||||
Sbjct: 519 ccccatgctcgagtgcc 535
>gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023J05f, mRNA sequence
Length = 819
Score = 327 bits (165), Expect = 4e-088
Identities = 439/528 (83%), Gaps = 8/528 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 243 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 302
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 303 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 362
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 363 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 421
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 422 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 481
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 482 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 541
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 542 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 601
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 602 gctgtaccgcttcgttcgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 661
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
|||||| |||||||| |||| |||||| || |||||||| |||||| ||||||| ||||
Sbjct: 662 gtcccc-ggcgaggaatgcaccaaggtctttctcggcattagccagaacaagctcatcga 720
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccat 532
|||||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct: 721 ccccatgctcgagtgcctcagggagtggaacggcgaggccctgcccat 768
>gb|BG414191.1|BG414191 HVSMEk0001A07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001A07f, mRNA sequence
Length = 586
Score = 319 bits (161), Expect = 9e-086
Identities = 404/484 (83%), Gaps = 7/484 (1%)
Strand = Plus / Plus
Query: 59 ctctccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtg 118
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 1 ctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtg 60
Query: 119 ttcacgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgc 178
|||| ||||| || ||||| |||||||| | | || ||||||||||| ||||||||
Sbjct: 61 ttcagctacgccgacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgc 119
Query: 179 cgtgctggtggaccacgccctca------gcagcggcgacgcggagcgcgagccctccgt 232
|||||| |||||||||||||| | || |||||| || ||| ||||| || | ||
Sbjct: 120 cgtgctcgtggaccacgccctgaccgccggccccggcgaggccgagagcgaggccacggt 179
Query: 233 cttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtgga 292
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | ||
Sbjct: 180 gttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcga 239
Query: 293 ggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacag 352
|||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| ||
Sbjct: 240 ggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagag 299
Query: 353 ccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccgg 412
| | ||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 300 caggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccgg 359
Query: 413 cgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccaggg 472
||||||||| ||||||||||||||| |||| |||||| ||||| ||||||||||||
Sbjct: 360 cgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctaggcatcagccagaa 419
Query: 473 caagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccat 532
||||||| ||||||| |||||||||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 420 caagctcatcgacccaatgctcgagtgcctcaaggaatggaacggcgagcccctgcccat 479
Query: 533 caac 536
||||
Sbjct: 480 caac 483
>gb|BI956268.1|BI956268 HVSMEn0001M16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001M16f, mRNA sequence
Length = 613
Score = 307 bits (155), Expect = 3e-082
Identities = 406/489 (83%), Gaps = 7/489 (1%)
Strand = Plus / Plus
Query: 54 gggacctctccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgagg 113
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 3 gggacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcgagg 62
Query: 114 ccgtgttcacgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactg 173
||||||||| ||||| || ||||| |||||||| | | || ||||||||||| |||
Sbjct: 63 ccgtgttcagctacgccgacgacgcatgcagcgccaac-tacccactgatgcagaagctg 121
Query: 174 cgcgccgtgctggtggaccacgccctca------gcagcggcgacgcggagcgcgagccc 227
||||||||||| |||||||||||||| | || |||||| || ||| ||||| ||
Sbjct: 122 cgcgccgtgctcgtggaccacgccctgaccgccggccccggcgaggccgagagcgaggcc 181
Query: 228 tccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggag 287
| || ||||||| ||||| |||||||||||||||||| || ||| ||||| | ||||
Sbjct: 182 acggtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggag 241
Query: 288 gtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcg 347
| |||||||||||||| ||| ||| | ||||| || ||| | |||||| |||| |
Sbjct: 242 atcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaag 301
Query: 348 gacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctc 407
|| ||| | ||||||||||||||||||||| | ||| |||||||||||||||||| ||||
Sbjct: 302 gagagcaggtcgttcccgctgtaccgcttcntccgcgaggagctcggctgcgtgtacctc 361
Query: 408 accggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagc 467
|||||||||||||| ||||||||||||||| |||| |||||| ||||||||||| |||
Sbjct: 362 accggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcattagc 421
Query: 468 cagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctg 527
|| |||||| | |||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct: 422 caaaacaagcttattgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctg 481
Query: 528 cccatcaac 536
||||||||
Sbjct: 482 gccatcaac 490
>gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10a01 3', mRNA sequence
Length = 701
Score = 307 bits (155), Expect = 3e-082
Identities = 380/454 (83%), Gaps = 7/454 (1%)
Strand = Plus / Minus
Query: 89 ctcatctccgccatcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagcgcc 148
|||||| ||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 700 ctcatcaccgccatcgaccgcgaggccgtgttcagctacgccgacgacgcatgcagcgcc 641
Query: 149 agcctgccggctgatgcagaaactgcgcgccgtgctggtggaccacgccctca------g 202
| | | || ||||||||||| |||||||||||||| |||||||||||||| | |
Sbjct: 640 aac-tacccactgatgcagaagctgcgcgccgtgctcgtggaccacgccctgaccgccgg 582
Query: 203 cagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggagga 262
| |||||| || ||| ||||| || | || ||||||| ||||| |||||||||||||||
Sbjct: 581 ccccggcgaggccgagagcgaggccacggtgttctccaagatcaacaagttcgaggagga 522
Query: 263 gctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcac 322
||| || ||| ||||| | |||| | |||||||||||||| ||| ||| | |||||
Sbjct: 521 gctgcggtcggccctgccgcgggagatcgaggccgcccgcgtggccttcgagaacggcac 462
Query: 323 cgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcg 382
|| ||| | |||||| |||| ||| ||| | ||||||||||||||||||||||| ||
Sbjct: 461 ggcgcccatccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccg 402
Query: 383 ccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtg 442
| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct: 401 cgaggagctcggctgcgtgtacctcaccggcgagaagctgctgtcccccggcgaggaatg 342
Query: 443 caacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcct 502
|| |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 341 caccaaggtcttcctcggcatcagccagaacaagctcatcgaccccatgctcgagtgcct 282
Query: 503 caaggagtgggacggcaagccgctgcccatcaac 536
|||||||||| ||||| |||| ||||||||||||
Sbjct: 281 caaggagtggaacggcgagcccctgcccatcaac 248
>gb|BI956808.1|BI956808 HVSMEn0005G21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005G21f, mRNA sequence
Length = 817
Score = 289 bits (146), Expect = 8e-077
Identities = 436/532 (81%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 137 gtgacgcaggtgtcgaagaaggtgctgaccatgaacgggggcggggacctctccagcgcg 196
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||| | |||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 197 cgcttcatcnagaaaagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 256
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| | | || ||||||||||| |||||||||||||| |||||
Sbjct: 257 gacgacgcatgcagcgccaac-tacccactgatgcagaagctgcgcgccgtgctcgtgga 315
Query: 191 ccacgccctca------gcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 316 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 375
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 376 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 435
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 436 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 495
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 496 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgct 555
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
||||||||| ||||| |||| ||||| ||||| ||||||| ||| ||||||| | ||
Sbjct: 556 gtcccccggggaggaatgcaccaagggcttccttggcatcacccacaacaagctcattga 615
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct: 616 ccccatgctcgagtgcctcaaggagtggaacggcgaacccctgcccatcaac 667
>gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15c08 3', mRNA sequence
Length = 671
Score = 280 bits (141), Expect = 8e-074
Identities = 323/384 (84%), Gaps = 6/384 (1%)
Strand = Plus / Minus
Query: 159 ctgatgcagaaactgcgcgccgtgctggtggaccacgccctca------gcagcggcgac 212
||||||||||| |||||||||||||| |||||||||||||| | || ||||||
Sbjct: 631 ctgatgcagaagctgcgcgccgtgctcgtggaccacgccctgaccgccggccccggcgag 572
Query: 213 gcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcg 272
|| ||| ||||| || | || ||||||| ||||| |||||||||||||||||| || ||
Sbjct: 571 gccgagagcgaggccacggtgttctccaagatcaacaagttcgaggaggagctgcggtcg 512
Query: 273 gtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtg 332
| ||||| | |||| | |||||||||||||| ||| ||| | ||||| || ||| |
Sbjct: 511 gccctgccgcgggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatc 452
Query: 333 gccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctc 392
|||||| |||| ||| ||| | ||||||||||||||||||||||| ||| ||||||||
Sbjct: 451 cccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctc 392
Query: 393 ggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtg 452
|||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||
Sbjct: 391 ggctgcgtgtacctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtc 332
Query: 453 ttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgg 512
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 331 ttcctcggcatcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtgg 272
Query: 513 gacggcaagccgctgcccatcaac 536
||||| |||| ||||||||||||
Sbjct: 271 aacggcgagcccctgcccatcaac 248
>gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18e12 3', mRNA sequence
Length = 664
Score = 280 bits (141), Expect = 8e-074
Identities = 323/384 (84%), Gaps = 6/384 (1%)
Strand = Plus / Minus
Query: 159 ctgatgcagaaactgcgcgccgtgctggtggaccacgccctca------gcagcggcgac 212
||||||||||| |||||||||||||| |||||||||||||| | || ||||||
Sbjct: 631 ctgatgcagaagctgcgcgccgtgctcgtggaccacgccctgaccgccggccccggcgag 572
Query: 213 gcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcg 272
|| ||| ||||| || | || ||||||| ||||| |||||||||||||||||| || ||
Sbjct: 571 gccgagagcgaggccacggtgttctccaagatcaacaagttcgaggaggagctgcggtcg 512
Query: 273 gtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtg 332
| ||||| | |||| | |||||||||||||| ||| ||| | ||||| || ||| |
Sbjct: 511 gccctgccgcgggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatc 452
Query: 333 gccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctc 392
|||||| |||| ||| ||| | ||||||||||||||||||||||| ||| ||||||||
Sbjct: 451 cccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctc 392
Query: 393 ggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtg 452
|||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||
Sbjct: 391 ggctgcgtgtacctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtc 332
Query: 453 ttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgg 512
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 331 ttcctcggcatcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtgg 272
Query: 513 gacggcaagccgctgcccatcaac 536
||||| |||| ||||||||||||
Sbjct: 271 aacggcgagcccctgcccatcaac 248
>gb|BI959802.1|BI959802 HVSMEn0021J20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021J20f, mRNA sequence
Length = 480
Score = 266 bits (134), Expect = 1e-069
Identities = 365/441 (82%), Gaps = 7/441 (1%)
Strand = Plus / Plus
Query: 56 gacctctccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggcc 115
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 41 gacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggcc 100
Query: 116 gtgttcacgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcg 175
||||||| ||||| || ||||| |||||||| | | || ||||||||||| |||||
Sbjct: 101 gtgttcagctacgccgacgacgcatgcagcgccaac-tacccactgatgcagaagctgcg 159
Query: 176 cgccgtgctggtggaccacgccctca------gcagcggcgacgcggagcgcgagccctc 229
||||||||| |||||||||||||| | || |||||| || ||| ||||| || |
Sbjct: 160 cgccgtgctcgtggaccacgccctgaccgccggccccggcgaggccgagagcgaggccac 219
Query: 230 cgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggt 289
|| ||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| |
Sbjct: 220 ggtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagat 279
Query: 290 ggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcgga 349
|||||||||||||| ||| ||| | ||||| || ||| | |||||| |||| |||
Sbjct: 280 cgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaagga 339
Query: 350 cagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcac 409
||| | ||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct: 340 gagcaggtcgttcccgctgtaccgcttcgtccgcgaagagctcggctgcgtgtacctcac 399
Query: 410 cggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagcca 469
|||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct: 400 cggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagcca 459
Query: 470 gggcaagctcgtcgaccccat 490
||||||| ||||||||||
Sbjct: 460 aaacaagctcatcgaccccat 480
>gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e14 3', mRNA sequence
Length = 602
Score = 264 bits (133), Expect = 4e-069
Identities = 312/372 (83%), Gaps = 6/372 (1%)
Strand = Plus / Minus
Query: 171 ctgcgcgccgtgctggtggaccacgccctca------gcagcggcgacgcggagcgcgag 224
|||||||||||||| |||||||||||||| | || |||||| || ||| |||||
Sbjct: 600 ctgcgcgccgtgctcgtggaccacgccctgaccgccggccccggcgaggccgagagcgag 541
Query: 225 ccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccag 284
|| | || ||||||| ||||| |||||||||||||||||| || ||| ||||| | |
Sbjct: 540 gccacggtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgg 481
Query: 285 gaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatc 344
||| | |||||||||||||| ||| ||| | ||||| || ||| | |||||| ||||
Sbjct: 480 gagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatc 421
Query: 345 gcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttc 404
||| ||| | ||||||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct: 420 aaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtac 361
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatc 464
||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||
Sbjct: 360 ctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatc 301
Query: 465 agccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccg 524
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 300 agccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagccc 241
Query: 525 ctgcccatcaac 536
||||||||||||
Sbjct: 240 ctgcccatcaac 229
>gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022A20f, mRNA sequence
Length = 623
Score = 260 bits (131), Expect = 7e-068
Identities = 260/303 (85%)
Strand = Plus / Plus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 170 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 229
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 230 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 289
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 290 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 349
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 350 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 409
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 410 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 469
Query: 534 aac 536
|||
Sbjct: 470 aac 472
Score = 93.7 bits (47), Expect = 9e-018
Identities = 96/111 (86%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 89 ctcatctccgccatcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagcgcc 148
|||||| ||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 20 ctcatcaccgccatcgaccgcgaggccgtgttcagctacgccgacgacgcatgcagcgcc 79
Query: 149 agcctgccggctgatgcagaaactgcgcgccgtgctggtggaccacgccct 199
| | | || ||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 80 aac-tacccactgatgcagaagctgcgcgccgtgctcgtggaccacgccct 129
>gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j05 3', mRNA sequence
Length = 609
Score = 260 bits (131), Expect = 7e-068
Identities = 260/303 (85%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 530 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 471
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 470 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 411
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 410 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 351
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 350 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 291
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 290 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 231
Query: 534 aac 536
|||
Sbjct: 230 aac 228
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 162 atgcagaaactgcgcgccgtgctggtggaccacg 195
|||||||| |||||||||||||| ||||||||||
Sbjct: 609 atgcagaagctgcgcgccgtgctcgtggaccacg 576
>gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p01 3', mRNA sequence
Length = 560
Score = 260 bits (131), Expect = 7e-068
Identities = 260/303 (85%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 551 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 492
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 491 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 432
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 431 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 372
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 371 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 312
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 311 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 252
Query: 534 aac 536
|||
Sbjct: 251 aac 249
>gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18b11 3', mRNA sequence
Length = 550
Score = 260 bits (131), Expect = 7e-068
Identities = 260/303 (85%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 550 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 491
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 490 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 431
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 430 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 371
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 370 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 311
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 310 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 251
Query: 534 aac 536
|||
Sbjct: 250 aac 248
>gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e13 3', mRNA sequence
Length = 564
Score = 260 bits (131), Expect = 7e-068
Identities = 260/303 (85%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 550 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 491
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 490 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 431
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 430 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 371
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 370 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 311
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 310 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 251
Query: 534 aac 536
|||
Sbjct: 250 aac 248
>gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F11
3-PRIME, mRNA sequence
Length = 596
Score = 260 bits (131), Expect = 7e-068
Identities = 260/303 (85%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 570 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 511
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 510 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 451
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 450 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 391
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 390 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 331
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 330 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 271
Query: 534 aac 536
|||
Sbjct: 270 aac 268
>gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22p22 3', mRNA sequence
Length = 572
Score = 254 bits (128), Expect = 4e-066
Identities = 259/303 (85%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| || || | |||| | |||
Sbjct: 509 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctnccgcgggagatcgag 450
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 449 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 390
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 389 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 330
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
Sbjct: 329 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 270
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 269 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 210
Query: 534 aac 536
|||
Sbjct: 209 aac 207
>gb|AL505275.1|AL505275 AL505275 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07P09V 5', mRNA sequence
Length = 487
Score = 248 bits (125), Expect = 3e-064
Identities = 367/447 (82%), Gaps = 7/447 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 40 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 99
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||| ||||||| |||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 100 cgcttcatcgagaagagcctcatcaccgtcatcgaccgcgaggccgtgttcagctacgcc 159
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct: 160 gacgacgcatgcagcgcca-actacccactgatgcagaagctgcgcgccgtgctcgtgga 218
Query: 191 ccacgccct------cagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 219 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 278
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 279 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 338
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 339 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 398
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||
Sbjct: 399 gctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcancggcgagaagctgct 458
Query: 425 gtcccccggcgaggagtgcaacaaggt 451
||||||||||||||| |||| ||||||
Sbjct: 459 gtcccccggcgaggaatgcaccaaggt 485
>gb|BM372199.2|BM372199 EBro03_SQ004_E20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_E20 5', mRNA sequence
Length = 521
Score = 246 bits (124), Expect = 1e-063
Identities = 260/304 (85%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 54 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 113
Query: 294 gccgcccgcgtcgccgt-cgccgagggcaccgcccccgtggccaaccggatcgcggacag 352
||||||||||| ||| | || | ||||| || ||| | |||||| |||| ||| ||
Sbjct: 114 gccgcccgcgtggcctttcgagaacggcacggcgcccatccccaacctgatcaaggagag 173
Query: 353 ccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccgg 412
| | ||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 174 caggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccgg 233
Query: 413 cgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccaggg 472
||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||
Sbjct: 234 cgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaa 293
Query: 473 caagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccat 532
||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct: 294 caagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccat 353
Query: 533 caac 536
||||
Sbjct: 354 caac 357
>gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004M09f, mRNA sequence
Length = 939
Score = 244 bits (123), Expect = 4e-063
Identities = 258/303 (85%)
Strand = Plus / Plus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 283 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 342
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 343 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 402
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| |||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||
Sbjct: 403 aggtcgttcccgctgtaccgcttagtccgcgaggagctcggctgcgtgtacctcaccggc 462
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
|||||||| ||||||||||||||| |||| |||||| || ||||||||||||||| |
Sbjct: 463 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttgctcggcatcagccagaac 522
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 523 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 582
Query: 534 aac 536
|||
Sbjct: 583 aac 585
Score = 131 bits (66), Expect = 4e-029
Identities = 148/174 (85%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 26 aagaaggtgctgaccatgaacccctcgggggacctctccagcgcgcgcttcagcgagaag 85
||||| ||||||||||||||||| | || |||||||||| ||||||||| | |||||||
Sbjct: 70 aagaaagtgctgaccatgaaccctaccggcgacctctccatcgcgcgcttgatcgagaag 129
Query: 86 gagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagc 145
|||||| ||||||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 130 agcctcatcaccgccatcgaccgcgaggccgtgttcagctacgccgacgacgcatgcagc 189
Query: 146 gccagcctgccggctgatgcagaaactgcgcgccgtgctggtggaccacgccct 199
|||| || || ||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 190 gcca-actacccactgatgcagaagctgcgcgccgtgctcgtggaccacgccct 242
>gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O10u 3', mRNA sequence
Length = 559
Score = 240 bits (121), Expect = 6e-062
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 465 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 406
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 405 aagctnctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 346
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 345 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 286
>gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM012cG.10, mRNA sequence
Length = 1180
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 209 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 268
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 269 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 328
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 329 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 388
>gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O05u 3', mRNA sequence
Length = 690
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 465 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 406
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 405 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 346
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 345 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 286
>gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O09u 3', mRNA sequence
Length = 594
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 465 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 406
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 405 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 346
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 345 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 286
>gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O11u 3', mRNA sequence
Length = 605
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 465 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 406
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 405 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 346
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 345 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 286
>gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06G07u 3', mRNA sequence
Length = 479
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 465 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 406
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 405 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 346
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 345 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 286
>gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08G13u 3', mRNA sequence
Length = 556
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 467 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 408
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 407 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 348
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 347 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 288
>gb|AL503927.1|AL503927 AL503927 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O01T 5', mRNA sequence
Length = 418
Score = 238 bits (120), Expect = 3e-061
Identities = 330/399 (82%), Gaps = 7/399 (1%)
Strand = Plus / Plus
Query: 29 aaggtgctgaccatgaacccctcgggggacctctccagcgcgcgcttcagcgagaaggag 88
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 10 aaggtgctgaccatgaaccctaccggcgacctctccagcgcgcgcttcagcgagaagagc 69
Query: 89 ctcatctccgccatcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagcgcc 148
|||||| ||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 70 ctcatcaccgccatcgaccgcgaggccgtgttcagctacgccgacgacgcatgcagcgcc 129
Query: 149 agcctgccggctgatgcagaaactgcgcgccgtgctggtggaccacgccct------cag 202
| || || ||||||||||| |||||||||||||| |||||||||||||| | |
Sbjct: 130 a-actacccactgatgcagaagctgcgcgccgtgctcgtggaccacgccctgaccgccgg 188
Query: 203 cagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggagga 262
| |||||| || ||| ||||| || | || ||||||| ||||| |||||||||||||||
Sbjct: 189 ccccggcgaggccgagagcgaggccacggtgttctccaagatcaacaagttcgaggagga 248
Query: 263 gctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcac 322
||| || ||| ||||| | |||| | |||||||||||||| ||| ||| | |||||
Sbjct: 249 gctgcggtcggccctgccgcgggagatcgaggccgcccgcgtggccttcgagaacggcac 308
Query: 323 cgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcg 382
|| ||| | |||||| |||| ||| ||| | ||||||||||||||||||||||| ||
Sbjct: 309 ggcgcccatccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccg 368
Query: 383 ccaggagctcggctgcgtgttcctcaccggcgagaagct 421
| |||||||||||||||||| ||||||||||||||||||
Sbjct: 369 cgaggagctcggctgcgtgtacctcaccggcgagaagct 407
>gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H01f, mRNA sequence
Length = 613
Score = 238 bits (120), Expect = 3e-061
Identities = 254/296 (85%), Gaps = 2/296 (0%)
Strand = Plus / Minus
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccc-caggaggtggaggccgccc 300
||||||||||||| |||||||||| || ||| |||||| | |||| | ||||||||||
Sbjct: 591 gatcaccaagttcaaggaggagctgcggtcgg-cctgcccgcgggagatcgaggccgccc 533
Query: 301 gcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgt 360
|||| ||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||
Sbjct: 532 gcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgt 473
Query: 361 tcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagc 420
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct: 472 tcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagc 413
Query: 421 tcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcg 480
| ||||||||||||||| |||| |||||| |||||||||||||||||| |||||||
Sbjct: 412 tgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctca 353
Query: 481 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 352 tcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 297
>gb|BF259754.3|BF259754 HVSMEf0020C19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020C19f, mRNA sequence
Length = 496
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 33 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 92
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 93 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 152
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 153 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 212
>gb|AV931622.1|AV931622 AV931622 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23i14 3', mRNA sequence
Length = 504
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 406 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 347
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 346 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 287
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 286 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 227
>gb|BJ452093.1|BJ452093 BJ452093 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l15 5', mRNA sequence
Length = 426
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 88 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 147
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 148 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 207
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 208 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 267
>gb|BJ465265.1|BJ465265 BJ465265 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b24 5', mRNA sequence
Length = 538
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 82 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 141
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 142 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 201
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 202 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 261
>gb|BJ468508.1|BJ468508 BJ468508 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b24 3', mRNA sequence
Length = 477
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 397 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 338
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 337 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 278
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 277 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 218
>gb|BQ661371.1|BQ661371 HM03D09u HM Hordeum vulgare subsp. vulgare cDNA clone HM03D09
3-PRIME, mRNA sequence
Length = 460
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 447 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 388
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 387 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 328
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 327 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 268
>gb|BQ664513.1|BQ664513 HV03K13u HV Hordeum vulgare subsp. vulgare cDNA clone HV03K13
3-PRIME, mRNA sequence
Length = 471
Score = 238 bits (120), Expect = 3e-061
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 444 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgag 385
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 384 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 325
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 324 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 265
>gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10a01 5', mRNA sequence
Length = 618
Score = 236 bits (119), Expect = 1e-060
Identities = 364/442 (82%), Gaps = 9/442 (2%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 175 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 234
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 235 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 294
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct: 295 gacgacgcatgcagcgcca-actacccactgatgcagaagctgcgcgccgtgctcgtgga 353
Query: 191 ccacgccct------cagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 354 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 413
Query: 245 caccaagttcgaggaggagc-tccgcgcggtgctgccccaggaggtggaggccgcccgcg 303
|| ||||||||||||||||| | || ||| ||||| | |||| | |||||||||||||
Sbjct: 414 caacaagttcgaggaggagcttgcggtcggccctgccgcgggagatcgaggccgcccgcg 473
Query: 304 tcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcc 363
| ||| ||| | ||||| || ||| | |||||| |||| ||| ||| | |||||||
Sbjct: 474 tggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttcc 533
Query: 364 cgctgtaccgcttcgtgcgccaggagctcggc-tgcgtgttcctcaccggcgagaagctc 422
|||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||
Sbjct: 534 cgctgtaccgcttcgtccgcgaggagctcggcttgcgtgtacctcaccggcgagaagctg 593
Query: 423 aagtcccccggcgaggagtgca 444
||||||||||||||| ||||
Sbjct: 594 ctgtcccccggcgaggaatgca 615
>gb|AV927824.1|AV927824 AV927824 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3n19 3', mRNA sequence
Length = 589
Score = 232 bits (117), Expect = 2e-059
Identities = 260/305 (85%), Gaps = 2/305 (0%)
Strand = Plus / Minus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||| |||||||||||||||||| || ||| ||||| | |||| | |||
Sbjct: 553 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 494
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||| ||| ||| | ||||| || ||| | |||||| |||| ||| |||
Sbjct: 493 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 434
Query: 354 cgctcgttcccgctgtaccgctt-cgtgcgccaggagctcggctgcgtgttcctcaccgg 412
| |||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||
Sbjct: 433 aggtcgttcccgctgtaccgctttcgtccgcgaggagctcggctgcgtgtacctcaccgg 374
Query: 413 cgagaagctcaagtcccccggcgaggagtgcaacaagg-tgttcctcggcatcagccagg 471
||||||||| ||||||||||||||| |||| ||||| | ||||||||||||||||||
Sbjct: 373 cgagaagctgctgtcccccggcgaggaatgcaccaagggtcttcctcggcatcagccaga 314
Query: 472 gcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgccca 531
||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct: 313 acaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccca 254
Query: 532 tcaac 536
|||||
Sbjct: 253 tcaac 249
>gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020E07f, mRNA sequence
Length = 681
Score = 222 bits (112), Expect = 2e-056
Identities = 163/180 (90%)
Strand = Plus / Minus
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
|||||||||||||||||||| || ||| |||||||||||||||||| |||| ||||||||
Sbjct: 536 tcgttcccgctgtaccgctttgtccgcaaggagctcggctgcgtgtccctccccggcgag 477
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 476 aagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaag 417
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 416 ctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 357
>gb|BE558376.3|BE558376 HV_CEb0017H01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017H01f, mRNA sequence
Length = 498
Score = 218 bits (110), Expect = 2e-055
Identities = 155/170 (91%)
Strand = Plus / Plus
Query: 367 tgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagt 426
||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 43 tgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgctgt 102
Query: 427 cccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgacc 486
||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||||
Sbjct: 103 cccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcgacc 162
Query: 487 ccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 163 ccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 212
>gb|BF628845.2|BF628845 HVSMEb0008N10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008N10f, mRNA sequence
Length = 758
Score = 210 bits (106), Expect = 6e-053
Identities = 340/417 (81%), Gaps = 7/417 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 55 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 114
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 115 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 174
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct: 175 gacgacgcatgcagcgcca-actacccactgatgcagaagctgcgcgccgtgctcgtgga 233
Query: 191 ccacgccct------cagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 234 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 293
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 294 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 353
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 354 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 413
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagct 421
||||| |||||| |||||| |||||||| ||||||| |||||||||||| |||||
Sbjct: 414 gctgtgccgcttggtgcgcagagagctcgggtgcgtgtgcctcaccggcgataagct 470
>gb|BI957553.1|BI957553 HVSMEn0010B19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010B19f, mRNA sequence
Length = 633
Score = 190 bits (96), Expect = 5e-047
Identities = 306/375 (81%), Gaps = 7/375 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 259 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 318
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 319 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 378
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct: 379 gacgacgcatgcagcgcca-actacccactgatgcagaagctgcgcgccgtgctcgtgga 437
Query: 191 ccacgccct------cagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 438 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 497
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 498 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 557
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 558 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 617
Query: 365 gctgtaccgcttcgt 379
|||||||||||||||
Sbjct: 618 gctgtaccgcttcgt 632
>gb|AV926975.1|AV926975 AV926975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e14 5', mRNA sequence
Length = 625
Score = 190 bits (96), Expect = 5e-047
Identities = 306/375 (81%), Gaps = 7/375 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 252 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 311
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 312 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 371
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct: 372 gacgacgcatgcagcgcca-actacccactgatgcagaagctgcgcgccgtgctcgtgga 430
Query: 191 ccacgccct------cagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 431 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 490
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||||||||||
Sbjct: 491 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgcccgcgt 550
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 551 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 610
Query: 365 gctgtaccgcttcgt 379
|||||||||||||||
Sbjct: 611 gctgtaccgcttcgt 625
>gb|AL502996.1|AL502996 AL502996 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G10u 3', mRNA sequence
Length = 537
Score = 186 bits (94), Expect = 8e-046
Identities = 153/170 (90%), Gaps = 2/170 (1%)
Strand = Plus / Minus
Query: 369 taccgcttcgtgcgccaggagctcggct-gcgtgttcctcacc-ggcgagaagctcaagt 426
||||||||||| ||| |||||||||||| |||||| ||||||| ||||||||||| ||
Sbjct: 518 taccgcttcgtccgcgaggagctcggcttgcgtgtacctcacccggcgagaagctgctgt 459
Query: 427 cccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgacc 486
||||||||||||| |||| |||||| |||||||||||||||||| ||||||| ||||||
Sbjct: 458 cccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcgacc 399
Query: 487 ccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 398 ccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatcaac 349
>gb|AL501309.1|AL501309 AL501309 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03M04u 3', mRNA sequence
Length = 562
Score = 184 bits (93), Expect = 3e-045
Identities = 158/177 (89%), Gaps = 2/177 (1%)
Strand = Plus / Minus
Query: 362 cccgctgtacc-gcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagc 420
||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct: 527 cccgctgtacccgcttcgaccgcgaggagctcggctgcgtgtacctcaccggcgagaagc 468
Query: 421 tcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcg 480
| ||||||||||||||| |||| |||||| ||||||||| |||||||| |||||||
Sbjct: 467 tgctgtcccccggcgaggaatgcaccaaggtcttcctcggcctcagccagaacaagctca 408
Query: 481 tcgaccccatgctc-gagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 407 tcgaccccatgctcggagtgcctcaaggagtggaacggcgagcccctgcccatcaac 351
>gb|AL505417.1|AL505417 AL505417 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08G13V 5', mRNA sequence
Length = 689
Score = 184 bits (93), Expect = 3e-045
Identities = 305/375 (81%), Gaps = 7/375 (1%)
Strand = Plus / Plus
Query: 11 gtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctctccagcgcg 70
||||| |||||| | ||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 230 gtgacgcaggtgtcgaagaaggtgctgaccatgaaccctaccggcgacctctccagcgcg 289
Query: 71 cgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacgcg 130
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 290 cgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcagctacgcc 349
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|| ||||| |||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct: 350 gacgacgcatgcagcgcca-actacccactgatgcagaagctgcgcgccgtgctcgtgga 408
Query: 191 ccacgccct------cagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
||||||||| | || |||||| || ||| ||||| || | || ||||||| |||
Sbjct: 409 ccacgccctgaccgccggccccggcgaggccgagagcgaggccacggtgttctccaagat 468
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|| |||||||||||||||||| || ||| ||||| | |||| | ||||||| ||||||
Sbjct: 469 caacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgaggccgnccgcgt 528
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
||| ||| | ||||| || ||| | |||||| |||| ||| ||| | ||||||||
Sbjct: 529 ggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagcaggtcgttccc 588
Query: 365 gctgtaccgcttcgt 379
|||||||||||||||
Sbjct: 589 gctgtaccgcttcgt 603
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,334
Number of Sequences: 312970
Number of extensions: 171334
Number of successful extensions: 59163
Number of sequences better than 0.5: 146
Number of HSP's better than 0.5 without gapping: 146
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58521
Number of HSP's gapped (non-prelim): 617
length of query: 885
length of database: 175,134,539
effective HSP length: 19
effective length of query: 866
effective length of database: 169,188,109
effective search space: 146516902394
effective search space used: 146516902394
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)