BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805363.2.1
(2856 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ768380.1|BQ768380 EBro08_SQ011_E16_R root, 3 week, dro... 737 0.0
gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedl... 684 0.0
gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. v... 591 e-167
gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedl... 515 e-144
gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. v... 486 e-135
gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA li... 454 e-126
gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-a... 454 e-126
gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. v... 408 e-112
gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. v... 400 e-109
gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedl... 387 e-105
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 377 e-102
gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. v... 369 e-100
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 365 5e-099
gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike... 363 2e-098
gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots... 359 3e-097
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 353 2e-095
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 341 8e-092
gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. v... 299 3e-079
gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, n... 287 1e-075
gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. v... 272 6e-071
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 268 9e-070
gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedl... 268 9e-070
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 244 1e-062
gb|BU969975.1|BU969975 HB13D11r BC Hordeum vulgare subsp. v... 226 3e-057
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 214 1e-053
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 192 4e-047
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 190 2e-046
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 190 2e-046
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 190 2e-046
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 190 2e-046
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 190 2e-046
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 190 2e-046
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 182 4e-044
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 182 4e-044
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 176 3e-042
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 155 1e-035
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 145 9e-033
gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots... 133 4e-029
gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-a... 133 4e-029
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 123 3e-026
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 123 3e-026
gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA li... 123 3e-026
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 123 3e-026
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 123 3e-026
gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. v... 123 3e-026
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 123 3e-026
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 123 3e-026
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 123 3e-026
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 123 3e-026
gb|BM368747.1|BM368747 EBem08_SQ004_H23_R embryo, 40 DPA, n... 121 1e-025
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 119 5e-025
gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hyd... 117 2e-024
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 113 3e-023
gb|CA020225.1|CA020225 HV14L03r HV Hordeum vulgare subsp. v... 113 3e-023
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 113 3e-023
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 109 5e-022
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 109 5e-022
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 109 5e-022
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 109 5e-022
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 109 5e-022
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 109 5e-022
gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. v... 109 5e-022
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 107 2e-021
gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa... 103 3e-020
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 103 3e-020
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 103 3e-020
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 103 3e-020
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 103 3e-020
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 103 3e-020
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 103 3e-020
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 103 3e-020
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 103 3e-020
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 103 3e-020
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 103 3e-020
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 103 3e-020
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 103 3e-020
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 103 3e-020
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 103 3e-020
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 103 3e-020
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 103 3e-020
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 98 2e-018
gb|BQ665967.1|BQ665967 HZ01L16u HZ Hordeum vulgare subsp. v... 98 2e-018
gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedl... 96 8e-018
gb|BG368813.1|BG368813 HVSMEi0020M13f Hordeum vulgare 20 DA... 96 8e-018
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 96 8e-018
gb|CA009062.1|CA009062 HU13B03r HU Hordeum vulgare subsp. v... 96 8e-018
gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. v... 94 3e-017
gb|BQ663315.1|BQ663315 HU02B19u HU Hordeum vulgare subsp. v... 94 3e-017
gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. v... 92 1e-016
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 90 5e-016
gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA li... 88 2e-015
gb|BE193304.2|BE193304 HVSMEh0080I07f Hordeum vulgare 5-45 ... 88 2e-015
gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgar... 88 2e-015
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 84 3e-014
gb|AL503288.1|AL503288 AL503288 Hordeum vulgare Barke roots... 84 3e-014
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 84 3e-014
gb|BM442929.2|BM442929 EBro02_SQ001_O08_R root, 3 week, hyd... 84 3e-014
gb|CB882206.1|CB882206 HL01D01w HL Hordeum vulgare subsp. v... 84 3e-014
gb|CB883651.1|CB883651 HQ02O03w HQ Hordeum vulgare subsp. v... 84 3e-014
gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. v... 82 1e-013
gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike... 80 5e-013
gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA li... 80 5e-013
gb|BJ464018.1|BJ464018 BJ464018 K. Sato unpublished cDNA li... 80 5e-013
gb|BQ661984.1|BQ661984 HR01B16u HR Hordeum vulgare subsp. v... 80 5e-013
gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. v... 80 5e-013
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 78 2e-012
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 78 2e-012
gb|CA026701.1|CA026701 HZ56L02r HZ Hordeum vulgare subsp. v... 78 2e-012
gb|BF624752.2|BF624752 HVSMEa0017K09f Hordeum vulgare seedl... 76 7e-012
gb|AL504419.1|AL504419 AL504419 Hordeum vulgare Barke roots... 74 3e-011
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 72 1e-010
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 72 1e-010
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 72 1e-010
gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. v... 72 1e-010
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 72 1e-010
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 72 1e-010
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 72 1e-010
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 70 4e-010
gb|BE195554.3|BE195554 HVSMEh0089G13f Hordeum vulgare 5-45 ... 70 4e-010
gb|BG417165.1|BG417165 HVSMEk0016J06f Hordeum vulgare testa... 64 3e-008
gb|CV061189.1|CV061189 BNEL65h6 Barley EST endosperm librar... 64 3e-008
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 62 1e-007
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 62 1e-007
gb|BQ661318.1|BQ661318 HM02P11u HM Hordeum vulgare subsp. v... 60 4e-007
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 58 2e-006
gb|BF259426.2|BF259426 HVSMEf0019B07f Hordeum vulgare seedl... 58 2e-006
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 58 2e-006
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 58 2e-006
gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachi... 58 2e-006
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 58 2e-006
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 58 2e-006
gb|BQ471177.1|BQ471177 HV01F24T HV Hordeum vulgare subsp. v... 58 2e-006
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 58 2e-006
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 58 2e-006
gb|BF253907.1|BF253907 HVSMEf0002H08f Hordeum vulgare seedl... 56 7e-006
gb|BI958001.1|BI958001 HVSMEn0012N14f Hordeum vulgare rachi... 56 7e-006
gb|BF265178.2|BF265178 HV_CEa0011H21f Hordeum vulgare seedl... 56 7e-006
gb|BF255020.3|BF255020 HVSMEf0005K21f Hordeum vulgare seedl... 56 7e-006
gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. v... 56 7e-006
gb|BU995821.1|BU995821 HM11H13r HM Hordeum vulgare subsp. v... 56 7e-006
gb|CA009005.1|CA009005 HU12N24r HU Hordeum vulgare subsp. v... 56 7e-006
gb|BM442942.2|BM442942 EBro02_SQ001_P12_R root, 3 week, hyd... 54 3e-005
gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. v... 54 3e-005
gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. v... 54 3e-005
gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. v... 54 3e-005
gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. v... 54 3e-005
gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. v... 54 3e-005
gb|CA022476.1|CA022476 HZ43F10r HZ Hordeum vulgare subsp. v... 52 1e-004
gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-a... 50 4e-004
gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedl... 48 0.002
gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA li... 48 0.002
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 48 0.002
gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA li... 48 0.002
gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA,... 48 0.002
gb|CA019265.1|CA019265 HV11G20r HV Hordeum vulgare subsp. v... 48 0.002
gb|BI959331.1|BI959331 HVSMEn0019E12f Hordeum vulgare rachi... 44 0.025
gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots... 42 0.10
gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots... 42 0.10
gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA li... 42 0.10
gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedl... 42 0.10
gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DA... 42 0.10
gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hyd... 42 0.10
gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, wat... 42 0.10
gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. v... 42 0.10
gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. v... 42 0.10
gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots... 40 0.40
gb|BF629280.2|BF629280 HVSMEb0010K01f Hordeum vulgare seedl... 40 0.40
gb|BG309038.1|BG309038 HVSMEc0001K13f Hordeum vulgare seedl... 40 0.40
gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. v... 40 0.40
gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-a... 38 1.6
gb|BI956576.1|BI956576 HVSMEn0004D17f Hordeum vulgare rachi... 38 1.6
gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare s... 38 1.6
gb|BQ468196.1|BQ468196 HP01F17T HP Hordeum vulgare subsp. v... 38 1.6
gb|BF255897.2|BF255897 HVSMEf0008C05f Hordeum vulgare seedl... 36 6.2
gb|BG343258.1|BG343258 HVSMEg0005D23f Hordeum vulgare pre-a... 36 6.2
gb|BF064987.2|BF064987 HV_CEb0022F07f Hordeum vulgare seedl... 36 6.2
gb|BF254086.3|BF254086 HVSMEf0002P20f Hordeum vulgare seedl... 36 6.2
gb|AV930789.1|AV930789 AV930789 K. Sato unpublished cDNA li... 36 6.2
gb|BJ463684.1|BJ463684 BJ463684 K. Sato unpublished cDNA li... 36 6.2
gb|BJ470984.1|BJ470984 BJ470984 K. Sato unpublished cDNA li... 36 6.2
gb|BJ471865.1|BJ471865 BJ471865 K. Sato unpublished cDNA li... 36 6.2
gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, wat... 36 6.2
gb|BU988332.1|BU988332 HF17F08r HF Hordeum vulgare subsp. v... 36 6.2
gb|CA013594.1|CA013594 HT08P06r HT Hordeum vulgare subsp. v... 36 6.2
gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. v... 36 6.2
gb|CA023493.1|CA023493 HZ46G19r HZ Hordeum vulgare subsp. v... 36 6.2
>gb|BQ768380.1|BQ768380 EBro08_SQ011_E16_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_E16 5', mRNA sequence
Length = 729
Score = 737 bits (372), Expect = 0.0
Identities = 642/733 (87%), Gaps = 8/733 (1%)
Strand = Plus / Minus
Query: 1365 acatgtatagcttcctttagcagggaacctgggtttgttgaagggggtatgccaccttga 1424
||||| || ||||||||||| |||||| ||||||| |||||||| |||||||| | ||||
Sbjct: 725 acatggatggcttcctttagtagggaagctgggttcgttgaaggtggtatgcctctttga 666
Query: 1425 gtcataaaannaanggggtggatgcaataaaaattggagactggccaaagcgtttctcca 1484
|||||||| |||||||||| |||| || |||||||| ||||| ||||||||||
Sbjct: 665 gtcataaa--------ggtggatgcagtaaatataggagactgaccaaatcgtttctcca 614
Query: 1485 agctcttctgagacataagcagtgacctttcatcctcgtaaccttcaaatccctcttcta 1544
| |||||||| |||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct: 613 atctcttctgggacataagcatggacctttcatcctcataaccttctattccctcttcta 554
Query: 1545 tatcttccatgttgaagatgggagccgaagattctgttctcttcatatcacggtttttgg 1604
|||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct: 553 tatcatccatgttgaagatgggagcagaagactcagttctcttcatcatacggtttttgt 494
Query: 1605 aatcaatatagctcttgtccttcttttttcttccgccacagcaacttttaatgataatgt 1664
||| ||||||||||||| ||| || ||||| || |||||||| || |||| | |||||
Sbjct: 493 tatccatatagctcttgttctttttctttctgccaccacagcagctcttaacaacaatgt 434
Query: 1665 taggctccaaatcagcttctgtcaatacaggatcatagccatacaaggcctgcctattga 1724
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 433 taggttccaaatcagcttcagttaatacaggatcatagccatacaaggcctgcctattga 374
Query: 1725 aacagcatcctgttcccacataaacaggtccttgaatgccatctagacccttcatattaa 1784
|||||||||||||||| ||||| | || |||||||||||||||| ||| ||||| || |
Sbjct: 373 aacagcatcctgttccgacatacattggaccttgaatgccatctaaacctttcatgttga 314
Query: 1785 tatcaaagaagacaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatc 1844
|||||||||| || ||||| || || ||||||||||| ||||| || || ||||||||||
Sbjct: 313 tatcaaagaaaactatgttgcgattagcatatcgatcgtgcaaatcaatgccatcaaatc 254
Query: 1845 tttgtggaaactgaacatagcaagttttccttcctagtgctggatccatcatgaaacaca 1904
|||||||||| || ||||||||||||||||||| ||| || |||||||||||||| ||||
Sbjct: 253 tttgtggaaattggacatagcaagttttccttcttagagcgggatccatcatgaagcaca 194
Query: 1905 tagcctctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagat 1964
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttgcttctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagat 134
Query: 1965 aagcaccattcgtcaggacagctgatacgcgaatcaaagcattcatggcaccagccttct 2024
| ||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||
Sbjct: 133 aggcaccattcgtcaacacagcagatacgcgaatcagtgcattcattgcaccagccttct 74
Query: 2025 tgtggtgctggaagcctggcctcttttcacgagaaacataaacaagccgtggcaactcat 2084
|||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 73 tgtgatgctggaaacctggtctcttttcacgagagacatacacaagccgtggcaactcat 14
Query: 2085 tcccatccgtgtc 2097
| ||||| |||||
Sbjct: 13 taccatcagtgtc 1
>gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0022J05f, mRNA sequence
Length = 804
Score = 684 bits (345), Expect = 0.0
Identities = 623/717 (86%)
Strand = Plus / Minus
Query: 1660 aatgttaggctccaaatcagcttctgtcaatacaggatcatagccatacaaggcctgcct 1719
|||| |||| ||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 720 aatggtaggttccaaatcagcctcagttaatacaggatcatagccatacaaggcctgcct 661
Query: 1720 attgaaacagcatcctgttcccacataaacaggtccttgaatgccatctagacccttcat 1779
|||| |||||||||| || ||||| | || || ||||||||||||| ||| |||||
Sbjct: 660 gttgancaagcatcctgtcccgacatacattggaccntgaatgccatctaaacctttcat 601
Query: 1780 attaatatcaaagaagacaatgttccggtttgcatatcgatcatgcaagtctataccatc 1839
|| ||||||||||| || ||||| || || ||||||||||| ||||| || || |||||
Sbjct: 600 gttgatatcaaagaaaactatgttgcgattagcatatcgatcgtgcaaatcaatgccatc 541
Query: 1840 aaatctttgtggaaactgaacatagcaagttttccttcctagtgctggatccatcatgaa 1899
||||||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 540 aaatctttgtggaaattggacatagcaagtcttccttcctagagcgggatccatcatgaa 481
Query: 1900 acacatagcctctctaagagctttgctgctattgaagtagtgatcacaatccacattaag 1959
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcacattgcttctctaagagctttgctgctattgaagtagtgatcacaatccacattaag 421
Query: 1960 aagataagcaccattcgtcaggacagctgatacgcgaatcaaagcattcatggcaccagc 2019
|||||| |||||||| |||| ||||| ||||||||||||| |||||||| ||||||||
Sbjct: 420 aagataggcaccatttgtcaacacagcagatacgcgaatcagtgcattcattgcaccagc 361
Query: 2020 cttcttgtggtgctggaagcctggcctcttttcacgagaaacataaacaagccgtggcaa 2079
||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 360 cttcttgtgatgctggaaacctggtctcttttcacgagagacatacacaagccgtggcaa 301
Query: 2080 ctcattcccatccgtgtcaagcccaccactgtggcccaagaatacttggatcattccngg 2139
|||||| ||||| |||||||| ||||||||||| |||||||| || || ||||| || ||
Sbjct: 300 ctcattaccatcagtgtcaaggccaccactgtgccccaagaacacctgaatcatgccagg 241
Query: 2140 atgatctctagggttattcccaggccanggagtgccatcagccatggtccagccctcctc 2199
||| || |||||||||||||||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 240 atggtccctagggttattcccaggccaagcggtgccatcggccatggtccacccctcttc 181
Query: 2200 aggtattttttgcgcttttgcaacaagggcatcgatccgtactttgaactcttcatactc 2259
|| | |||||| ||||| |||||||| || | ||| |||| ||| || |||||||||||
Sbjct: 180 gggcactttttgggctttggcaacaagtgcgttgattcgtattttaaattcttcatactc 121
Query: 2260 cctcttcatagcccgcctttctttcacaaaagaaggttgtattttgtcctttaggtaatc 2319
|||||||| || |||||||| |||||||||||||| || ||||||||||| ||||||||
Sbjct: 120 tctcttcattgctcgcctttccttcacaaaagaaggctgaattttgtccttcaggtaatc 61
Query: 2320 tatctttcgagcaaagtaaaactctggagccctaggttcaatgttgtgtttcttgca 2376
||| ||| | ||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 60 tattttttgctgaaagtaaaactctggggcccttggttcaatgttgtgcttcttgca 4
>gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. vulgare cDNA clone HL01A17
3-PRIME, mRNA sequence
Length = 652
Score = 591 bits (298), Expect = e-167
Identities = 545/627 (86%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 1786 atcaaagaagacaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatct 1845
||||||||| || |||| || || ||||||||||| ||||| || || |||||||||||
Sbjct: 652 atcaaagaaaactatgtgncgattagcatatcgatcgtgcaaatcaatgccatcaaatct 593
Query: 1846 ttgtggaaactgaacatagcaagttttccttcctagtgctggatccatcatgaaacacat 1905
||||||||| || ||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 592 ttgtggaaattggacatagcaagtcttccttcctagagcgggatccatcatgaagcacat 533
Query: 1906 agcctctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagata 1965
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgcttctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagata 473
Query: 1966 agcaccattcgtcaggacagctgatacgcgaatcaaagcattcatggcaccagccttctt 2025
|||||||| |||| ||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct: 472 ggcaccatttgtcaacacagcagatacgcgaatcagtgcattcattgcaccagccttctt 413
Query: 2026 gtggtgctggaagcctggcctcttttcacgagaaacataaacaagccgtggcaactcatt 2085
||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 412 gtgatgctggaaacctggtctcttttcacgagagacatacacaagccgtggcaactcatt 353
Query: 2086 cccatccgtgtcaagcccaccactgtggcccaagaatacttggatcattccnggatgatc 2145
||||| |||||||| ||||||||||| |||||||| || || ||||| || ||||| ||
Sbjct: 352 accatcagtgtcaaggccaccactgtgccccaagaacacctgaatcatgccaggatggtc 293
Query: 2146 tctagggttattcccaggccanggagtgccatcagccatggtccagccctcctcaggtat 2205
|||||||||||||||||||| | |||||||| ||||||||||| ||||| || || |
Sbjct: 292 cctagggttattcccaggccaagcggtgccatcggccatggtccacccctcttcgggcac 233
Query: 2206 tttttgcgcttttgcaacaagggcatcgatccgtactttgaactcttcatactccctctt 2265
|||||| ||||| |||||||| || | ||| |||| ||| || ||||||||||| |||||
Sbjct: 232 tttttgggctttggcaacaagtgcgttgattcgtattttaaattcttcatactctctctt 173
Query: 2266 catagcccgcctttctttcacaaaagaaggttgtattttgtcctttaggtaatctatctt 2325
||| || |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct: 172 cattgctcgcctttccttcacaaaagaaggctgaattttgtccttcaggtaatctatttt 113
Query: 2326 tcgagcaaagtaaaactctggagccctaggttcaatgttgtgtttcttgcaaaagggaac 2385
| | ||||||||||||||| ||||| |||||||||||||| |||||||| || || ||
Sbjct: 112 ttgctgaaagtaaaactctggggcccttggttcaatgttgtgcttcttgcagaatgg-ac 54
Query: 2386 ccatttccttgcaaactctgcggtttc 2412
||| ||||| ||||| ||||| |||||
Sbjct: 53 ccacttcctagcaaattctgcagtttc 27
>gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006J03f, mRNA sequence
Length = 848
Score = 515 bits (260), Expect = e-144
Identities = 651/779 (83%), Gaps = 13/779 (1%)
Strand = Plus / Minus
Query: 948 cccagcataattgctaatcgcaggaataataaatttgttggtgagtaaacagatagcagg 1007
|||||||| ||| || ||| ||||||| |||| ||||||||||| | |||||||||||
Sbjct: 766 cccagcattattactgatctcaggaatgataaccttgttggtgaggagccagatagcagg 707
Query: 1008 aaggacgcagtatgctactagtgggatagatgtaattggataaacaatggtgttgatgta 1067
|| | || || || | ||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 706 gagcccacaataggcgataagtgggagggatgttattggataaacaatggtgttgatgta 647
Query: 1068 tgccagtctctccagaagctttagccttccattgtaaccataccagataggacagtgtct 1127
|||| ||||||||||| || | || ||| |||| |||||||||||||| |||||
Sbjct: 646 agccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatgtct 587
Query: 1128 gctaagtagaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcaga 1187
||||| |||||||||||||| || |||||||| || | |||||| || ||||| |||||
Sbjct: 586 gctaaacagaatttcaactgacccgagagcccatcgcagcacttgattaagacggtcaga 527
Query: 1188 aagattaattggagcagaacccttgaagcaaggccgaagtggcatgcagtagatggatat 1247
||||| ||||| |||||||||||||| |||||||| ||||||| |||||||| |||||
Sbjct: 526 cagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgatat 467
Query: 1248 ccaacctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatat 1307
|||||||||||| ||||| || || ||||| | ||||||||||||||| || ||||| ||
Sbjct: 466 ccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatagat 407
Query: 1308 ccatccgatctctttcccccattctgttttatcctcatatnnccacnaaactaatgnaca 1367
||| || |||||||| |||||||| ||||| ||||||||| |||| | || ||| |||
Sbjct: 406 ccagccaatctcttttccccattcggttttgtcctcatat--ccac--agctgatg-aca 352
Query: 1368 tgtatagcttcctttagcagggaacctgggtttgttgaagggggtatgccaccttgagtc 1427
|| || ||||||||||| || ||| |||||||||||||||| |||||||| |||||||||
Sbjct: 351 tggatggcttcctttagtagagaagctgggtttgttgaaggtggtatgcctccttgagtc 292
Query: 1428 ataaaannaanggggtggatgcaataaaaattggagactggccaaagcgtttctccaagc 1487
||||| |||||||||| |||| || |||||||||||||| ||||||||||| |
Sbjct: 291 ataaa--------ggtggatgcagtaaatataggagactggccaaatcgtttctccaatc 240
Query: 1488 tcttctgagacataagcagtgacctttcatcctcgtaaccttcaaatccctcttctatat 1547
||||||| |||||||||| |||||||||||||| |||||||| | |||||||||||||
Sbjct: 239 tcttctgggacataagcatcgacctttcatcctcataaccttctataccctcttctatat 180
Query: 1548 cttccatgttgaagatgggagccgaagattctgttctcttcatatcacggtttttggaat 1607
|||||||||||||||||||||| ||||| || ||||||||||| ||||||||| ||
Sbjct: 179 cttccatgttgaagatgggagcagaagactcagttctcttcatcatgcggtttttgttat 120
Query: 1608 caatatagctcttgtccttcttttttcttccgccacagcaacttttaatgataatgttag 1667
| ||||||||||||| ||| || ||||| || || ||||| || |||| | ||||||||
Sbjct: 119 ccatatagctcttgttctttttctttctgccaccgcagcagctcttaacaacaatgttag 60
Query: 1668 gctccaaatcagcttctgtcaatacaggatcatagccatacaaggcctgcctattgaaa 1726
| ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 59 gttccaaatcagcctcagttaatacaggatcatagccatacaaggcctgcctgttgaaa 1
>gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H01
5-PRIME, mRNA sequence
Length = 526
Score = 486 bits (245), Expect = e-135
Identities = 453/523 (86%)
Strand = Plus / Minus
Query: 1988 gatacgcgaatcaaagcattcatggcaccagccttcttgtggtgctggaagcctggcctc 2047
||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct: 523 gatacgcgaatcagtgcattcattgcaccagccttcttgtgatgctggaaacctggtctc 464
Query: 2048 ttttcacgagaaacataaacaagccgtggcaactcattcccatccgtgtcaagcccacca 2107
||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 463 ttttcacgagagacatacacaagccgtggcaactcattaccatcagtgtcaaggccacca 404
Query: 2108 ctgtggcccaagaatacttggatcattccnggatgatctctagggttattcccaggccan 2167
||||| |||||||| || || ||||| || ||||| || ||||||||||||||||||||
Sbjct: 403 ctgtgccccaagaacacctgaatcatgccaggatggtccctagggttattcccaggccaa 344
Query: 2168 ggagtgccatcagccatggtccagccctcctcaggtattttttgcgcttttgcaacaagg 2227
| |||||||| ||||||||||| ||||| || || | |||||| ||||| ||||||||
Sbjct: 343 gcggtgccatcggccatggtccacccctcttcgggcactttttgggctttggcaacaagt 284
Query: 2228 gcatcgatccgtactttgaactcttcatactccctcttcatagcccgcctttctttcaca 2287
|| | ||| |||| ||| || ||||||||||| |||||||| || |||||||| ||||||
Sbjct: 283 gcgttgattcgtattttaaattcttcatactctctcttcattgctcgcctttccttcaca 224
Query: 2288 aaagaaggttgtattttgtcctttaggtaatctatctttcgagcaaagtaaaactctgga 2347
|||||||| || ||||||||||| ||||||||||| ||| | |||||||||||||||
Sbjct: 223 aaagaaggctgaattttgtccttcaggtaatctattttttgctgaaagtaaaactctggg 164
Query: 2348 gccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaaactctgcg 2407
||||| |||||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 163 gcccttggttcaatgttgtgcttcttgcagaatggaacccacttcctagcaaattctgca 104
Query: 2408 gtttcagatagagcttcaaaagtcaacatagctgaaccgtcatcagaaacataacatgat 2467
||||| || || | ||||| ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 103 gtttctgagagcgactcaaacgtcaacatagccgaaccatcatcagaaacatagcatgac 44
Query: 2468 actttgtcaacagggtaatccacagcaagaatggacaggacag 2510
|||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 43 actttgtcgacagggtaatccacagcaagaatggacagaacag 1
>gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd20p06, mRNA sequence
Length = 473
Score = 454 bits (229), Expect = e-126
Identities = 414/473 (87%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 1611 tatagctcttgtccttcttttttcttccgccacagcaacttttaatgataatgttaggct 1670
|||||||||||| ||| || ||||| || || ||||| || |||| | ||||||||| |
Sbjct: 473 tatagctcttgttctttttctttctgccaccgcagcagctcttaacaacaatgttaggtt 414
Query: 1671 ccaaatcagcttctgtcaatacaggatcatagccatacaaggcctgcctattgaaacagc 1730
|||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 413 ccaaatcagcctcagttaatacaggatcatagccatacaaggcctgcctgttgaaacagc 354
Query: 1731 atcctgttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaa 1790
||||||| || ||||| | || || ||||||||||||| ||| ||||| || |||||||
Sbjct: 353 atcctgtcccgacatacattggaccctgaatgccatctaaacctttcatgttgatatcaa 294
Query: 1791 agaagacaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtg 1850
|||| || ||||| || || ||||||||||| ||||| || || ||||||||||||||||
Sbjct: 293 agaaaactatgttgcgattagcatatcgatcgtgcaaatcaatgccatcaaatctttgtg 234
Query: 1851 gaaactgaacatagcaagttttccttcctagtgctggatccatcatgaaacacatagcct 1910
|||| || ||||||||||| ||||||||||| || |||||||||||||| ||||| || |
Sbjct: 233 gaaattggacatagcaagtcttccttcctagagcgggatccatcatgaagcacattgctt 174
Query: 1911 ctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagataagcac 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 173 ctctaagagctttgctgctattgaagtagtgatcacaatccacattaagaagataggcac 114
Query: 1971 cattcgtcaggacagctgatacgcgaatcaaagcattcatggcaccagccttcttgtggt 2030
|||| |||| ||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 113 catttgtcaacacagcagatacgcgaatcagtgcattcattgcaccagccttcttgtgat 54
Query: 2031 gctggaagcctggcct-cttttcacgagaaacataaacaag-ccgtggcaact 2081
||||||| ||||| || |||||||||||| ||||| ||||| |||||||||||
Sbjct: 53 gctggaaacctggtctacttttcacgagagacatacacaagnccgtggcaact 1
>gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007D23f, mRNA sequence
Length = 786
Score = 454 bits (229), Expect = e-126
Identities = 542/644 (84%), Gaps = 13/644 (2%)
Strand = Plus / Minus
Query: 947 ccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaacagatagcag 1006
|||||||||| || || ||| | ||||| ||||||||||||||||| | |||||||||||
Sbjct: 650 ccccagcatagttactgatctcgggaatgataaatttgttggtgaggagacagatagcag 591
Query: 1007 gaaggacgcagtatgctactagtgggatagatgtaattggataaacaatggtgttgatgt 1066
|||| || || || || | ||||| | ||||| |||||||||||||||||||||||||
Sbjct: 590 gaagcacacaataggcgataagtggaagggatgttattggataaacaatggtgttgatgt 531
Query: 1067 atgccagtctctccagaagctttagccttccattgtaaccataccagataggacagtgtc 1126
| |||| ||||||||||| || | || ||| |||| |||||||||||||| ||||
Sbjct: 530 aagccatcctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatgtc 471
Query: 1127 tgctaagtagaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcag 1186
|||||| |||||||||||||| ||||||||||| || | ||||| |||||||| ||||
Sbjct: 470 tgctaaacagaatttcaactgacccaagagcccaccggagaacttgattgagacggtcag 411
Query: 1187 aaagattaattggagcagaacccttgaagcaaggccgaagtggcatgcagtagatggata 1246
| ||||| ||||| |||||||||||||| ||||| || |||||||||||||||| ||||
Sbjct: 410 agagattgattggcgcagaacccttgaaacaaggtcgtggtggcatgcagtagattgata 351
Query: 1247 tccaacctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatata 1306
||||||||||||| ||||| || || ||||| | ||||||||||||||| || ||||| |
Sbjct: 350 tccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccataga 291
Query: 1307 tccatccgatctctttcccccattctgttttatcctcatatnnccacnaaactaatgnac 1366
|||| || |||||||| |||||||| ||||| ||||||||| |||| | || ||| ||
Sbjct: 290 tccagccaatctcttttccccattcggttttgtcctcatat--ccac--agctgatg-ac 236
Query: 1367 atgtatagcttcctttagcagggaacctgggtttgttgaagggggtatgccaccttgagt 1426
||| || ||||||||||| |||||| ||||||| |||||||| |||||||| ||||||||
Sbjct: 235 atggatggcttcctttagtagggaagctgggttcgttgaaggtggtatgcctccttgagt 176
Query: 1427 cataaaannaanggggtggatgcaataaaaattggagactggccaaagcgtttctccaag 1486
|||||| |||||||||| |||| || |||||||| ||||| |||||||||||
Sbjct: 175 cataaa--------ggtggatgcagtaaatataggagactgaccaaatcgtttctccaat 124
Query: 1487 ctcttctgagacataagcagtgacctttcatcctcgtaaccttcaaatccctcttctata 1546
|||||||| |||||||||| |||||||||||||| |||||||| | |||||||||||||
Sbjct: 123 ctcttctgggacataagcatggacctttcatcctcataaccttctattccctcttctata 64
Query: 1547 tcttccatgttgaagatgggagccgaagattctgttctcttcat 1590
|| |||||||||||||||||||| ||||| || |||||||||||
Sbjct: 63 tcatccatgttgaagatgggagcagaagactcagttctcttcat 20
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 832 ccaccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacaccactccat 891
||||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct: 767 ccaccaaaaacccagaactgctcgtttctccaccagtcctcgatgccgacaccactccat 708
Query: 892 cgaagctcc 900
|| ||||||
Sbjct: 707 cgcagctcc 699
>gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. vulgare cDNA clone HB22G06
5-PRIME, mRNA sequence
Length = 655
Score = 408 bits (206), Expect = e-112
Identities = 518/622 (83%)
Strand = Plus / Minus
Query: 706 aacacatacagctcagcaaaatcaccatcatcatcggttgcctttgatgtgaccgtgaag 765
||||| || ||||| ||||| || || || || ||| ||||||| || || |||||||||
Sbjct: 655 aacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtgaag 596
Query: 766 tttgtgtcgatccctgctagcacttttaagagaccttggaacacagcaaagagatgtgca 825
|| ||||||||||| || ||||| || | ||||| |||||||| || || ||||| |||
Sbjct: 595 ttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaagatgggca 536
Query: 826 gaggtgccaccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacacca 885
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct: 535 gacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccgacacca 476
Query: 886 ctccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcaggatgaagaac 945
|||||||| |||||||| ||||||||||| || || || ||||| | || || ||||||
Sbjct: 475 ctccatcggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaagaac 416
Query: 946 gccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaacagatagca 1005
|||||||||||| || ||| ||||||| ||||| ||||||||||| | |||||||||
Sbjct: 415 atcccagcataattactgatctcaggaatgataaacttgttggtgaggaggcagatagca 356
Query: 1006 ggaaggacgcagtatgctactagtgggatagatgtaattggataaacaatggtgttgatg 1065
||||| || || || || | ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 355 ggaagcacacaataggcgataagtgggagggatgttattggataaacaatggtgttgatg 296
Query: 1066 tatgccagtctctccagaagctttagccttccattgtaaccataccagataggacagtgt 1125
|| |||| ||||||||||| || | || ||| |||| |||||||||||||| |||
Sbjct: 295 taagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatgt 236
Query: 1126 ctgctaagtagaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatca 1185
||||||| |||||||||||||| || |||||||| || | |||||| || ||||| |||
Sbjct: 235 ctgctaaacagaatttcaactgacccgagagcccatcgcagcacttgattaagacggtca 176
Query: 1186 gaaagattaattggagcagaacccttgaagcaaggccgaagtggcatgcagtagatggat 1245
|| ||||| ||||| |||||||||||||| |||||||| ||||||| |||||||| |||
Sbjct: 175 gacagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgat 116
Query: 1246 atccaacctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatat 1305
|||||||||||||| ||||| || || ||||| | ||||||||||||||| || |||||
Sbjct: 115 atccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatag 56
Query: 1306 atccatccgatctctttccccc 1327
||||| || |||||||| ||||
Sbjct: 55 atccagccaatctcttttcccc 34
>gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. vulgare cDNA clone HB01H14
5-PRIME, mRNA sequence
Length = 586
Score = 400 bits (202), Expect = e-109
Identities = 494/589 (83%), Gaps = 13/589 (2%)
Strand = Plus / Minus
Query: 970 ggaataataaatttgttggtgagtaaacagatagcaggaaggacgcagtatgctactagt 1029
||||| ||||| ||||||||||| | |||||||||||||| || || || || | |||
Sbjct: 586 ggaatgataaacttgttggtgaggaggcagatagcaggaagcacacaataggcgataagt 527
Query: 1030 gggatagatgtaattggataaacaatggtgttgatgtatgccagtctctccagaagcttt 1089
|||| ||||| |||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 526 gggagggatgttattggataaacaatggtgttgatgtaagccaccctctccagaagtttc 467
Query: 1090 agccttccattgtaaccataccagataggacagtgtctgctaagtagaatttcaactgaa 1149
| || ||| |||| |||||||||||||| |||||||||| ||||||||||||||
Sbjct: 466 aaccgcccaccgtaattgtaccagataggacaatgtctgctaaacagaatttcaactgac 407
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
|| |||||||| || | |||||| || ||||| ||||| ||||| ||||| |||||||||
Sbjct: 406 ccgagagcccatcgcagcacttgattaagacggtcagacagattgattggcgcagaaccc 347
Query: 1210 ttgaagcaaggccgaagtggcatgcagtagatggatatccaacctcttgcatgcatcttg 1269
||||| |||||||| ||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct: 346 ttgaaacaaggccgtggtggcatacagtagattgatatccaacctcttgcgtgcatttta 287
Query: 1270 aaaccagttaaaatatcttcagtaacagagccatatatccatccgatctctttcccccat 1329
|| ||||| | ||||||||||||||| || ||||| ||||| || |||||||| ||||||
Sbjct: 286 aacccagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccat 227
Query: 1330 tctgttttatcctcatatnnccacnaaactaatgnacatgtatagcttcctttagcaggg 1389
|| ||||| ||||||||| |||| | || ||| ||||| || ||||||||||| || |
Sbjct: 226 tcggttttgtcctcatat--ccac--agctgatg-acatggatggcttcctttagtagag 172
Query: 1390 aacctgggtttgttgaagggggtatgccaccttgagtcataaaannaanggggtggatgc 1449
|| |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 171 aagctgggtttgttgaaggtggtatgcctccttgagtcataaa--------ggtggatgc 120
Query: 1450 aataaaaattggagactggccaaagcgtttctccaagctcttctgagacataagcagtga 1509
| |||| || |||||||||||||| ||||||||||| |||||||| |||||||||| ||
Sbjct: 119 agtaaatataggagactggccaaatcgtttctccaatctcttctgggacataagcatcga 60
Query: 1510 cctttcatcctcgtaaccttcaaatccctcttctatatcttccatgttg 1558
|||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 59 cctttcatcctcataaccttctataccctcttctatatcttccatgttg 11
>gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017G02f, mRNA sequence
Length = 812
Score = 387 bits (195), Expect = e-105
Identities = 498/599 (83%)
Strand = Plus / Minus
Query: 697 gtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcctttgatgtg 756
|||||||||||||| || ||||| ||||| || || || || ||| ||||||| || ||
Sbjct: 600 gtccacttgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggta 541
Query: 757 accgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaacacagcaaag 816
||||||||||| ||||||||||| || ||||| || | ||||| |||||||| || ||
Sbjct: 540 accgtgaagttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaa 481
Query: 817 agatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaatcctcaatg 876
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 480 agatgggcagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatg 421
Query: 877 ccaacaccactccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcagg 936
|| |||||||||||||| |||||||| ||||||||||| || || || ||||| | ||
Sbjct: 420 ccgacaccactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgaga 361
Query: 937 atgaagaacgccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaa 996
|| |||||| |||||||||||| || ||| ||||||| ||||| ||||||||||| |
Sbjct: 360 ataaagaacatcccagcataattactgatctcaggaatgataaacttgttggtgaggagg 301
Query: 997 cagatagcaggaaggacgcagtatgctactagtgggatagatgtaattggataaacaatg 1056
||||||||||| || || || || || | ||||||| ||||| |||||||||||||||
Sbjct: 300 cagatagcagggagcacacaataggcgataagtgggagggatgttattggataaacaatg 241
Query: 1057 gtgttgatgtatgccagtctctccagaagctttagccttccattgtaaccataccagata 1116
||||||||||| |||| ||||||||||| || | || ||| |||| |||||||||
Sbjct: 240 gtgttgatgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagata 181
Query: 1117 ggacagtgtctgctaagtagaatttcaactgaaccaagagcccagcgtaacacttggttg 1176
||||| |||||||||| |||||||||||||| || |||||||| || | |||||| ||
Sbjct: 180 ggacaatgtctgctaaacagaatttcaactgacccgagagcccatcgcagcacttgatta 121
Query: 1177 agacgatcagaaagattaattggagcagaacccttgaagcaaggccgaagtggcatgcag 1236
||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||||| |||
Sbjct: 120 agacggtcagacagattgattggcgcagaacccttgaaacaaggccgtggtggcatacag 61
Query: 1237 tagatggatatccaacctcttgcatgcatcttgaaaccagttaaaatatcttcagtaac 1295
|| | ||||||||||||||||| ||||| || || ||||| | |||||||||||||||
Sbjct: 60 tacactgatatccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaac 2
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 377 bits (190), Expect = e-102
Identities = 495/599 (82%)
Strand = Plus / Minus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 616 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 557
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 556 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 497
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 496 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 437
Query: 592 agtggaccccatgattggtagccactgttgatagcatacgacactccagccactatacca 651
|| || ||||| |||||||| || |||||||| || || || | || ||||| || ||
Sbjct: 436 agcgggccccaggattggtaaccgctgttgatggcgtatgatatgcctgccaccatgccc 377
Query: 652 accaggttaatcacaagcacagtggtnnnnnnnatcagaagagttgtccacttgaacaca 711
|||||||| ||||| || || ||||| || || ||| | ||||||||||||||
Sbjct: 376 accaggttgatcacgaggacggtggtcggagggatgaggagactggtccacttgaacacg 317
Query: 712 tacagctcagcaaaatcaccatcatcatcggttgcctttgatgtgaccgtgaagtttgtg 771
|| ||||| ||||| || || || || ||| ||||||| || || ||||||||||| |||
Sbjct: 316 tatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtg 257
Query: 772 tcgatccctgctagcacttttaagagaccttggaacacagcaaagagatgtgcagaggtg 831
|||||||| || ||||| || | ||||| |||||||| || || ||||| ||||| |||
Sbjct: 256 tcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaagatgggcagacgtg 197
Query: 832 ccaccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacaccactccat 891
||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct: 196 ccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccgacaccactccat 137
Query: 892 cgaagctccaaaataccagtggcgaagatagaagcaaaaagcaggatgaagaacgcccca 951
|| |||||||| ||||||||||| || || || ||||| | || || |||||| ||||
Sbjct: 136 cggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaagaacatccca 77
Query: 952 gcataattgctaatcgcaggaataataaatttgttggtgagtaaacagatagcaggaag 1010
|||||||| || ||| ||||||| ||||| ||||||||||| | ||||||||||||||
Sbjct: 76 gcataattactgatctcaggaatgataaacttgttggtgaggaggcagatagcaggaag 18
>gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
5-PRIME, mRNA sequence
Length = 523
Score = 369 bits (186), Expect = e-100
Identities = 448/533 (84%), Gaps = 13/533 (2%)
Strand = Plus / Minus
Query: 1136 gaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagattaa 1195
||||||||||||| || |||||||| || | |||||| || ||||| ||||| ||||| |
Sbjct: 523 gaatttcaactgacccgagagcccatcgcagcacttgattaagacggtcagacagattga 464
Query: 1196 ttggagcagaacccttgaagcaaggccgaagtggcatgcagtagatggatatccaacctc 1255
|||| |||||||||||||| |||||||| ||||||| |||||||| |||||||||||||
Sbjct: 463 ttggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgatatccaacctc 404
Query: 1256 ttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccatccga 1315
|||| ||||| || || ||||| | ||||||||||||||| || ||||| ||||| || |
Sbjct: 403 ttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagccaa 344
Query: 1316 tctctttcccccattctgttttatcctcatatnnccacnaaactaatgnacatgtatagc 1375
||||||| |||||||| ||||| ||||||||| |||| | || ||| ||||| || ||
Sbjct: 343 tctcttttccccattcggttttgtcctcatat--ccac--agctgatg-acatggatggc 289
Query: 1376 ttcctttagcagggaacctgggtttgttgaagggggtatgccaccttgagtcataaaann 1435
||||||||| || ||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct: 288 ttcctttagtagagaagctgggtttgttgaaggtggtatgcctccttgagtcataaa--- 232
Query: 1436 aanggggtggatgcaataaaaattggagactggccaaagcgtttctccaagctcttctga 1495
|||||||||| |||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 231 -----ggtggatgcagtaaatataggagactggccaaatcgtttctccaatctcttctgg 177
Query: 1496 gacataagcagtgacctttcatcctcgtaaccttcaaatccctcttctatatcttccatg 1555
|||||||||| |||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 176 gacataagcatcgacctttcatcctcataaccttctataccctcttctatatcttccatg 117
Query: 1556 ttgaagatgggagccgaagattctgttctcttcatatcacggtttttggaatcaatatag 1615
|||||||||||||| ||||| || ||||||||||| ||||||||| ||| ||||||
Sbjct: 116 ttgaagatgggagcagaagactcagttctcttcatcatgcggtttttgttatccatatag 57
Query: 1616 ctcttgtccttcttttttcttccgccacagcaacttttaatgataatgttagg 1668
||||||| ||| || ||||| || || ||||| || |||| | |||||||||
Sbjct: 56 ctcttgttctttttctttctgccaccgcagcagctcttaacaacaatgttagg 4
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 365 bits (184), Expect = 5e-099
Identities = 480/581 (82%)
Strand = Plus / Minus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 624 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 565
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 505
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 504 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 445
Query: 592 agtggaccccatgattggtagccactgttgatagcatacgacactccagccactatacca 651
|| || ||||| |||||||| || |||||||| || || || | || ||||| || ||
Sbjct: 444 agcgggccccaggattggtaaccgctgttgatggcgtatgatatgcctgccaccatgccc 385
Query: 652 accaggttaatcacaagcacagtggtnnnnnnnatcagaagagttgtccacttgaacaca 711
|||||||| ||||| || || ||||| || || ||| | ||||||||||||||
Sbjct: 384 accaggttgatcacgaggacggtggtcggagggatgaggagactggtccacttgaacacg 325
Query: 712 tacagctcagcaaaatcaccatcatcatcggttgcctttgatgtgaccgtgaagtttgtg 771
|| ||||| ||||| || || || || ||| ||||||| || || ||||||||||| |||
Sbjct: 324 tatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtg 265
Query: 772 tcgatccctgctagcacttttaagagaccttggaacacagcaaagagatgtgcagaggtg 831
|||||||| || ||||| || | ||||| |||||||| || || ||||| ||||| |||
Sbjct: 264 tcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaagatgggcagacgtg 205
Query: 832 ccaccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacaccactccat 891
||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct: 204 ccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccgacaccactccat 145
Query: 892 cgaagctccaaaataccagtggcgaagatagaagcaaaaagcaggatgaagaacgcccca 951
|| |||||||| ||||||||||| || || || ||||| | || || |||||| ||||
Sbjct: 144 cggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaagaacatccca 85
Query: 952 gcataattgctaatcgcaggaataataaatttgttggtgag 992
|||||||| || ||| ||||||| ||||| |||||||||||
Sbjct: 84 gcataattactgatctcaggaatgataaacttgttggtgag 44
>gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0011E15f, mRNA sequence
Length = 807
Score = 363 bits (183), Expect = 2e-098
Identities = 494/593 (83%), Gaps = 6/593 (1%)
Strand = Plus / Minus
Query: 817 agatgtgcagaggtgccaccaatgaccca-aaactgctcatttctccaccaatcctcaat 875
||||| ||||| ||||||||||| ||||| ||||||||| ||||||| ||| ||||| ||
Sbjct: 589 agatgggcagatgtgccaccaataacccagaaactgctcgtttctcccccagtcctcgat 530
Query: 876 gccaacaccactccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcag 935
||| |||||||||||| | |||||||| ||||| ||||| ||||| || ||||| | ||
Sbjct: 529 gccgacaccactccatggcagctccaatatacccgtggcaaagatggaggcaaacataag 470
Query: 936 gatgaagaacgccccagcataattgctaatcgcaggaataataaatttgttggtgagtaa 995
|| |||||| ||||||||| || || ||| | ||||| ||||||||||||||||| |
Sbjct: 469 aataaagaacatcccagcatagttactgatctcgggaatgataaatttgttggtgaggag 410
Query: 996 acagatagcaggaaggacgcagtatgctactagtgggatagatgtaattggataaacaat 1055
||||||||||||||| || || || || | ||||| | ||||| ||||||||||||||
Sbjct: 409 acagatagcaggaagcacacaataggcgataagtggaagggatgttattggataaacaat 350
Query: 1056 ggtgttgatgtatgccagtctctccagaagctttagccttccattgtaaccataccagat 1115
|||||||||||| |||| ||||||||||| || | || ||| |||| ||||||||
Sbjct: 349 ggtgttgatgtaagccatcctctccagaagtttcaaccgcccaccgtaattgtaccagat 290
Query: 1116 aggacagtgtctgctaagtagaatttcaactgaaccaagagcccagcgtaacacttggtt 1175
|||||| |||||||||| |||||||||||||| ||||||||||| || | ||||| ||
Sbjct: 289 aggacaatgtctgctaaacagaatttcaactgacccaagagcccaccggagaacttgatt 230
Query: 1176 gagacgatcagaaagattaattggagcagaacccttgaagcaaggccgaagtggcatgca 1235
|||||| ||||| ||||| ||||| |||||||||||||| ||||| || ||||||||||
Sbjct: 229 gagacggtcagagagattgattggcgcagaacccttgaaacaaggtcgtggtggcatgca 170
Query: 1236 gtagatggatatccaacctcttgcatgcatcttgaaaccagttaaaatatcttcagtaac 1295
|||||| ||||||||||||||||| ||||| || || ||||| | |||||||||||||||
Sbjct: 169 gtagattgatatccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaac 110
Query: 1296 agagccatatatccatccgatctctttcccccattctgttttatcctcatatnnccacna 1355
|| ||||| ||||| || |||||||| |||||||| ||||| ||||||||| ||||
Sbjct: 109 tgaaccatagatccagccaatctcttttccccattcggttttgtcctcatat--ccac-- 54
Query: 1356 aactaatgnacatgtatagcttcctttagcagggaacctgggtttgttgaagg 1408
| || ||| ||||| || ||||||||||| |||||| ||||||| ||||||||
Sbjct: 53 agctgatg-acatggatggcttcctttagtagggaagctgggttcgttgaagg 2
>gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21V 5', mRNA sequence
Length = 499
Score = 359 bits (181), Expect = 3e-097
Identities = 389/456 (85%), Gaps = 13/456 (2%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||||||||| || |||||||| || | |||||| || ||||| ||||| |||||
Sbjct: 482 agaatttcaactgacccgagagcccatcgcagcacttgattaagacggtcagacagattg 423
Query: 1195 attggagcagaacccttgaagcaaggccgaagtggcatgcagtagatggatatccaacct 1254
||||| |||||||||||||| |||||||| ||||||| |||||||| ||||||||||||
Sbjct: 422 attggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgatatccaacct 363
Query: 1255 cttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccatccg 1314
||||| ||||| || || ||||| | ||||||||||||||| || ||||| ||||| ||
Sbjct: 362 cttgcgtgcattttaaacccagtaagaatatcttcagtaactgaaccatagatccagcca 303
Query: 1315 atctctttcccccattctgttttatcctcatatnnccacnaaactaatgnacatgtatag 1374
|||||||| |||||||| ||||| ||||||||| |||| | || ||| ||||| || |
Sbjct: 302 atctcttttccccattcggttttgtcctcatat--ccac--agctgatg-acatggatgg 248
Query: 1375 cttcctttagcagggaacctgggtttgttgaagggggtatgccaccttgagtcataaaan 1434
|||||||||| || ||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct: 247 cttcctttagtagagaagctgggtttgttgaaggtggtatgcctccttgagtcataaa-- 190
Query: 1435 naanggggtggatgcaataaaaattggagactggccaaagcgtttctccaagctcttctg 1494
|||||||||| |||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 189 ------ggtggatgcagtaaatataggagactggccaaatcgtttctccaatctcttctg 136
Query: 1495 agacataagcagtgacctttcatcctcgtaaccttcaaatccctcttctatatcttccat 1554
|||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct: 135 ggacataagcatcgacctttcatcctcataaccttctataccctcttctatatcttccat 76
Query: 1555 gttgaagatgggagccgaagattctgttctcttcat 1590
||||||||||||||| ||||| || |||||||||||
Sbjct: 75 gttgaagatgggagcagaagactcagttctcttcat 40
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 353 bits (178), Expect = 2e-095
Identities = 465/563 (82%)
Strand = Plus / Minus
Query: 430 atgaaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaa 489
||||| ||||||||||||||||| || || ||||| ||||| || || |||| ||||||
Sbjct: 606 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 547
Query: 490 acaatgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtag 549
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 546 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 487
Query: 550 aggtggaggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattgg 609
|| ||||||||||||||||||| ||||| ||||| || || || || ||||| ||||||
Sbjct: 486 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 427
Query: 610 tagccactgttgatagcatacgacactccagccactataccaaccaggttaatcacaagc 669
|| || |||||||| || || || | || ||||| || || |||||||| ||||| ||
Sbjct: 426 taaccgctgttgatggcgtatgatatgcctgccaccatgcccaccaggttgatcacgagg 367
Query: 670 acagtggtnnnnnnnatcagaagagttgtccacttgaacacatacagctcagcaaaatca 729
|| ||||| || || ||| | |||||||||||||| || ||||| ||||| ||
Sbjct: 366 acggtggtcggagggatgaggagactggtccacttgaacacgtatagctctgcaaagtcg 307
Query: 730 ccatcatcatcggttgcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcact 789
|| || || ||| ||||||| || || ||||||||||| ||||||||||| || |||||
Sbjct: 306 ccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtgtcgatcccagccagcacc 247
Query: 790 tttaagagaccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaac 849
|| | ||||| |||||||| || || ||||| ||||| |||||||||||||||||||||
Sbjct: 246 ttgagcagaccctggaacaccgcgaaaagatgggcagacgtgccaccaatgacccaaaac 187
Query: 850 tgctcatttctccaccaatcctcaatgccaacaccactccatcgaagctccaaaatacca 909
||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 186 tgctcgtttctccaccagtcctcgatgccgacaccactccatcggagctccaatatacca 127
Query: 910 gtggcgaagatagaagcaaaaagcaggatgaagaacgccccagcataattgctaatcgca 969
||||| || || || ||||| | || || |||||| |||||||||||| || ||| ||
Sbjct: 126 gtggcaaaaatggacgcaaacatgagaataaagaacatcccagcataattactgatctca 67
Query: 970 ggaataataaatttgttggtgag 992
||||| ||||| |||||||||||
Sbjct: 66 ggaatgataaacttgttggtgag 44
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak42j03 5', mRNA sequence
Length = 685
Score = 341 bits (172), Expect = 8e-092
Identities = 519/637 (81%)
Strand = Plus / Minus
Query: 524 ccatgagacccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagct 583
||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||
Sbjct: 685 ccatgagacccttgaggaaggggtagagatggaggatcacccagattgagaagaagagct 626
Query: 584 tcccgaatagtggaccccatgattggtagccactgttgatagcatacgacactccagcca 643
| || || || || ||||| |||||||| || |||||||| || || || | || ||||
Sbjct: 625 ttccaaagagcgggccccaggattggtaaccgctgttgatggcgtatgatatgcctgcca 566
Query: 644 ctataccaaccaggttaatcacaagcacagtggtnnnnnnnatcagaagagttgtccact 703
| || || |||||||| ||||| || || ||||| || || ||| | |||||||
Sbjct: 565 ccatgcccaccaggttgatcacgaggacggtggtcggagggatgaggagactggtccact 506
Query: 704 tgaacacatacagctcagcaaaatcaccatcatcatcggttgcctttgatgtgaccgtga 763
||||||| || ||||| ||||| || || || || ||| ||||||| || || |||||||
Sbjct: 505 tgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtga 446
Query: 764 agtttgtgtcgatccctgctagcacttttaagagaccttggaacacagcaaagagatgtg 823
|||| ||||||||||| || ||||| || | ||||| |||||||| || || ||||| |
Sbjct: 445 agttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaaagatggg 386
Query: 824 cagaggtgccaccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacac 883
|||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 385 cagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatgccgacac 326
Query: 884 cactccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcaggatgaaga 943
|||||||||| |||||||| ||||||||||| || || || ||||| | || || ||||
Sbjct: 325 cactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaaga 266
Query: 944 acgccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaacagatag 1003
|| |||||||||||| || ||| ||||||| ||||| ||||||||||| | |||||||
Sbjct: 265 acatcccagcataattactgatctcaggaatgataaacttgttggtgaggaggcagatag 206
Query: 1004 caggaaggacgcagtatgctactagtgggatagatgtaattggataaacaatggtgttga 1063
|||| || || || || || | ||||||| ||||| ||||||||||||||||||||||
Sbjct: 205 cagggagcacacaataggcgataagtgggagggatgttattggataaacaatggtgttga 146
Query: 1064 tgtatgccagtctctccagaagctttagccttccattgtaaccataccagataggacagt 1123
|||| |||| ||||||||||| || | || ||| |||| |||||||||||||| |
Sbjct: 145 tgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaat 86
Query: 1124 gtctgctaagtagaatttcaactgaaccaagagccca 1160
||||||||| |||||||||||||| || ||||||||
Sbjct: 85 gtctgctaaacagaatttcaactgacccgagagccca 49
>gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. vulgare cDNA clone HF06C19
5-PRIME, mRNA sequence
Length = 548
Score = 299 bits (151), Expect = 3e-079
Identities = 385/463 (83%)
Strand = Plus / Minus
Query: 697 gtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcctttgatgtg 756
|||||||||||||| || ||||| ||||| || || || || ||| ||||||| || ||
Sbjct: 472 gtccacttgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggta 413
Query: 757 accgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaacacagcaaag 816
||||||||||| ||||||||||| || ||||| || | ||||| |||||||| || ||
Sbjct: 412 accgtgaagttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaa 353
Query: 817 agatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaatcctcaatg 876
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 352 agatgggcagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatg 293
Query: 877 ccaacaccactccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcagg 936
|| |||||||||||||| |||||||| ||||||||||| || || || ||||| | ||
Sbjct: 292 ccgacaccactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgaga 233
Query: 937 atgaagaacgccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaa 996
|| |||||| |||||||||||| || ||| ||||||| ||||| ||||||||||| |
Sbjct: 232 ataaagaacatcccagcataattactgatctcaggaatgataaacttgttggtgaggagg 173
Query: 997 cagatagcaggaaggacgcagtatgctactagtgggatagatgtaattggataaacaatg 1056
|||||||||||||| || || || || | ||||||| ||||| |||||||||||||||
Sbjct: 172 cagatagcaggaagcacacaataggcgataagtgggagggatgttattggataaacaatg 113
Query: 1057 gtgttgatgtatgccagtctctccagaagctttagccttccattgtaaccataccagata 1116
||||||||||| |||| ||||||||||| || | || ||| |||| |||||||||
Sbjct: 112 gtgttgatgtaagccaccctctccagaagtttcaaccgcccaccgtaattgtaccagata 53
Query: 1117 ggacagtgtctgctaagtagaatttcaactgaaccaagagccc 1159
||||| |||||||||| |||||||||||||| || |||||||
Sbjct: 52 ggacaatgtctgctaaacagaatttcaactgacccgagagccc 10
>gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_B14 5', mRNA sequence
Length = 555
Score = 287 bits (145), Expect = 1e-075
Identities = 450/554 (81%)
Strand = Plus / Minus
Query: 607 tggtagccactgttgatagcatacgacactccagccactataccaaccaggttaatcaca 666
||||| || |||||||| ||||| || | || ||||| || || |||||||||||||||
Sbjct: 555 tggtaaccgctgttgatggcatatgatatgcctgccaccatgcccaccaggttaatcaca 496
Query: 667 agcacagtggtnnnnnnnatcagaagagttgtccacttgaacacatacagctcagcaaaa 726
|| || ||||| || || ||| | |||||||||||||| || | ||||||||||
Sbjct: 495 aggacggtggtcggaggaatgaggagactggtccacttgaacacgtataactcagcaaaa 436
Query: 727 tcaccatcatcatcggttgcctttgatgtgaccgtgaagtttgtgtcgatccctgctagc 786
|| ||||| || ||| ||||||| || || ||||||||||| ||||| ||||| || | |
Sbjct: 435 tcgccatcctcgtcgtttgccttcgaggtaaccgtgaagttggtgtcaatcccggccaac 376
Query: 787 acttttaagagaccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaa 846
|| || | ||||| |||||||| || || ||||| ||||| ||||||||||| |||||
Sbjct: 375 accttcagcagaccctggaacactgcgaaaagatgggcagatgtgccaccaataacccag 316
Query: 847 aactgctcatttctccaccaatcctcaatgccaacaccactccatcgaagctccaaaata 906
|||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 315 aactgctcgtttctccaccagtcctcgatgccgacaccactccatcgcagctccaatata 256
Query: 907 ccagtggcgaagatagaagcaaaaagcaggatgaagaacgccccagcataattgctaatc 966
|| ||||| ||||| || ||||| | || || |||||| ||||||||| || || |||
Sbjct: 255 cccgtggcaaagatggaggcaaacataagaataaagaacatcccagcatagttactgatc 196
Query: 967 gcaggaataataaatttgttggtgagtaaacagatagcaggaaggacgcagtatgctact 1026
| ||||| ||||||||||||||||| | ||||||||||||||| || || || || |
Sbjct: 195 tcgggaatgataaatttgttggtgaggagacagatagcaggaagcacacaataggcgata 136
Query: 1027 agtgggatagatgtaattggataaacaatggtgttgatgtatgccagtctctccagaagc 1086
||||| | ||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 135 agtggaagggatgttattggataaacaatggtgttgatgtaagccatcctctccagaagt 76
Query: 1087 tttagccttccattgtaaccataccagataggacagtgtctgctaagtagaatttcaact 1146
|| | || ||| |||| |||||||||||||| |||||||||| ||||||||||||
Sbjct: 75 ttcaaccgcccaccgtaattgtaccagataggacaatgtctgctaaacagaatttcaact 16
Query: 1147 gaaccaagagccca 1160
|| |||||||||||
Sbjct: 15 gacccaagagccca 2
>gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B16
5-PRIME, mRNA sequence
Length = 498
Score = 272 bits (137), Expect = 6e-071
Identities = 326/389 (83%)
Strand = Plus / Minus
Query: 697 gtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcctttgatgtg 756
|||||||||||||| || ||||| ||||| || || || || ||| ||||||| || ||
Sbjct: 406 gtccacttgaacacgtatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggta 347
Query: 757 accgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaacacagcaaag 816
||||||||||| ||||||||||| || ||||| || | ||||| |||||||| || ||
Sbjct: 346 accgtgaagttggtgtcgatcccagccagcaccttgagcagaccctggaacaccgcgaaa 287
Query: 817 agatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaatcctcaatg 876
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 286 agatgggcagacgtgccaccaatgacccaaaactgctcgtttctccaccagtcctcgatg 227
Query: 877 ccaacaccactccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcagg 936
|| |||||||||||||| |||||||| ||||||||||| || || || ||||| | ||
Sbjct: 226 ccgacaccactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgaga 167
Query: 937 atgaagaacgccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaa 996
|| |||||| |||||||||||| || ||| ||||||| ||||| ||||||||||| |
Sbjct: 166 ataaagaacatcccagcataattactgatctcaggaatgataaacttgttggtgaggagg 107
Query: 997 cagatagcaggaaggacgcagtatgctactagtgggatagatgtaattggataaacaatg 1056
|||||||||||||| || || || || | ||||||| ||||| |||||||||||||||
Sbjct: 106 cagatagcaggaagcacacaataggcgataagtgggagggatgttattggataaacaatg 47
Query: 1057 gtgttgatgtatgccagtctctccagaag 1085
||||||||||| |||| |||||||||||
Sbjct: 46 gtgttgatgtaagccaccctctccagaag 18
>gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016E13f, mRNA sequence
Length = 578
Score = 268 bits (135), Expect = 9e-070
Identities = 465/576 (80%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 558 gatcacccagattgcaaagaacagcttcccgaata-gtggaccccatgattggtagccac 616
||||||| |||||| ||||| ||||| ||||| | |||||||||| || ||||| || |
Sbjct: 577 gatcaccgagattgagaagaagagctttccgaagaagtggaccccaagactggtaaccgc 518
Query: 617 tgttgatagcatacgacactccagccactataccaaccaggttaatcacaagcacagtgg 676
||||||| ||||| || | || ||||| || || ||||||||||||||||| || ||||
Sbjct: 517 tgttgatggcatatgatatgcctgccaccatgcccaccaggttaatcacaaggacggtgg 458
Query: 677 tnnnnnnnatcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcat 736
| || || ||| | |||||||||||||| || | |||||||||||| ||||| |
Sbjct: 457 tcggaggaatgaggagactggtccacttgaacacgtataactcagcaaaatcgccatcct 398
Query: 737 catcggttgcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaaga 796
| ||| ||||||| || || ||||||||||| ||||| ||||| || | ||| || | |
Sbjct: 397 cgtcgtttgccttcgaggtaaccgtgaagttggtgtcaatcccggccaacaccttcagca 338
Query: 797 gaccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcat 856
|||| |||||||| || || ||||| ||||| ||||||||||| ||||| |||||||| |
Sbjct: 337 gaccctggaacactgcgaaaagatgggcagatgtgccaccaataacccagaactgctcgt 278
Query: 857 ttctccaccaatcctcaatgccaacaccactccatcgaagctccaaaataccagtggcga 916
|||||||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||||| |
Sbjct: 277 ttctccaccagtcctcgatgccgacaccactccatcgcagctccaatatacccgtggcaa 218
Query: 917 agatagaagcaaaaagcaggatgaagaacgccccagcataattgctaatcgcaggaataa 976
|||| || || || | || || |||||| ||||||||| || || ||| | ||||| |
Sbjct: 217 agatggaggcgaacataagaataaagaacatcccagcatagttactgatctcgggaatga 158
Query: 977 taaatttgttggtgagtaaacagatagcaggaaggacgcagtatgctactagtgggatag 1036
|||||||||||||||| | ||||||||||||||| || || || || | ||||| | |
Sbjct: 157 taaatttgttggtgaggagacagatagcaggaagcacacaataggcgataagtggaaggg 98
Query: 1037 atgtaattggataaacaatggtgttgatgtatgccagtctctccagaagctttagccttc 1096
|||| |||||||||||||||||||||||||| |||| ||||||||||| || | || |
Sbjct: 97 atgttattggataaacaatggtgttgatgtaagccatcctctccagaagtttcaaccgcc 38
Query: 1097 cattgtaaccataccagataggacagtgtctgctaa 1132
|| |||| |||||||||||||| ||||||||||
Sbjct: 37 caccgtaattgtaccagataggacaatgtctgctaa 2
>gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004C10f, mRNA sequence
Length = 636
Score = 268 bits (135), Expect = 9e-070
Identities = 358/430 (83%), Gaps = 13/430 (3%)
Strand = Plus / Minus
Query: 1056 ggtgttgatgtatgccagtctctccagaagctttagccttccattgtaaccataccagat 1115
|||||||||||| |||| ||||||||||| || | || ||| |||| ||||||||
Sbjct: 441 ggtgttgatgtaagccaccctctccagaagtttcacccgcccaccgtaattgtaccagat 382
Query: 1116 aggacagtgtctgctaagtagaatttcaactgaaccaagagcccagcgtaacacttggtt 1175
|||||| |||||||||| |||||||||||||| || |||||||| || | |||||| ||
Sbjct: 381 aggacaatgtctgctaaacagaatttcaactgacccgagagcccatcgcagcacttgatt 322
Query: 1176 gagacgatcagaaagattaattggagcagaacccttgaagcaaggccgaagtggcatgca 1235
||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||||| ||
Sbjct: 321 aagacggtcagacagattgattggcgcagaacccttgaaacaaggccgtggtggcataca 262
Query: 1236 gtagatggatatccaacctcttgcatgcatcttgaaaccagttaaaatatcttcagtaac 1295
|||||| ||||||||||||||||| ||||| || || ||||| | |||||||||||||||
Sbjct: 261 gtagattgatatccaacctcttgcgtgcattttaaacccagtaagaatatcttcagtaac 202
Query: 1296 agagccatatatccatccgatctctttcccccattctgttttatcctcatatnnccacna 1355
|| ||||| ||||| || |||||||| |||||||| ||||| ||||||||| ||||
Sbjct: 201 tgaaccatagatccagccaatctcttttccccattcggttttgtcctcatat--ccac-- 146
Query: 1356 aactaatgnacatgtatagcttcctttagcagggaacctgggtttgttgaagggggtatg 1415
| || ||| ||||| || ||||||||||| || ||| |||||||||||||||| ||||||
Sbjct: 145 agctgatg-acatggatggcttcctttagtagagaagctgggtttgttgaaggtggtatg 87
Query: 1416 ccaccttgagtcataaaannaanggggtggatgcaataaaaattggagactggccaaagc 1475
|| |||||||||||||| |||||||||| |||| || |||||||||||||| |
Sbjct: 86 cctccttgagtcataaa--------ggtggatgcagtaaatataggagactggccaaatc 35
Query: 1476 gtttctccaa 1485
||||||||||
Sbjct: 34 gtttctccaa 25
>gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
5-PRIME, mRNA sequence
Length = 403
Score = 244 bits (123), Expect = 1e-062
Identities = 228/263 (86%)
Strand = Plus / Minus
Query: 415 ttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaagca 474
||||||||| ||||||||| |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 292 ttctgggtatcggatatgaaagggtcgatcttcacccacaggagggagaagatggaggct 233
Query: 475 agaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgagaccc 534
|| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 232 aggaggatggaccaaacaatgacgatggttggcgtgcggttctgcttccccatgagaccc 173
Query: 535 ttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaatagt 594
|| ||||| |||||||| ||||||||||||||||||| ||||| ||||| ||||| |||
Sbjct: 172 ttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccgaagagt 113
Query: 595 ggaccccatgattggtagccactgttgatagcatacgacactccagccactataccaacc 654
|||||||| || ||||| || |||||||| ||||| || | || ||||| || || |||
Sbjct: 112 ggaccccaagactggtaaccgctgttgatggcatatgatatgcctgccaccatgcccacc 53
Query: 655 aggttaatcacaagcacagtggt 677
|||||||||||||| || |||||
Sbjct: 52 aggttaatcacaaggacggtggt 30
>gb|BU969975.1|BU969975 HB13D11r BC Hordeum vulgare subsp. vulgare cDNA clone HB13D11
5-PRIME, mRNA sequence
Length = 348
Score = 226 bits (114), Expect = 3e-057
Identities = 267/318 (83%)
Strand = Plus / Minus
Query: 948 cccagcataattgctaatcgcaggaataataaatttgttggtgagtaaacagatagcagg 1007
|||||||||||| || ||| ||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 330 cccagcataattactgatctcaggaatgataaacttgttggtgaggaggcagatagcagg 271
Query: 1008 aaggacgcagtatgctactagtgggatagatgtaattggataaacaatggtgttgatgta 1067
||| || || || || | ||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 270 aagcacacaataggcgataagtgggagggatgttattggataaacaatggtgttgatgta 211
Query: 1068 tgccagtctctccagaagctttagccttccattgtaaccataccagataggacagtgtct 1127
|||| ||||||||||| || | || ||| |||| |||||||||||||| |||||
Sbjct: 210 agccaccctctccagaagtttcaaccgcccaccgtaattgtaccagataggacaatgtct 151
Query: 1128 gctaagtagaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcaga 1187
||||| |||||||||||||| || |||||||| || | |||||| || ||||| |||||
Sbjct: 150 gctaaacagaatttcaactgacccgagagcccatcgcagcacttgattaagacggtcaga 91
Query: 1188 aagattaattggagcagaacccttgaagcaaggccgaagtggcatgcagtagatggatat 1247
||||| ||||| |||||||||||||| |||||||| ||||||| |||||||| |||||
Sbjct: 90 cagattgattggcgcagaacccttgaaacaaggccgtggtggcatacagtagattgatat 31
Query: 1248 ccaacctcttgcatgcat 1265
|||||||||||| |||||
Sbjct: 30 ccaacctcttgcgtgcat 13
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 214 bits (108), Expect = 1e-053
Identities = 308/377 (81%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 157 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 216
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 217 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 276
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 277 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 336
Query: 592 agtggaccccatgattggtagccactgttgatagcatacgacactccagccactatacca 651
|| || ||||| |||||||| || |||||||| || || || | || ||||| || ||
Sbjct: 337 agcgggccccaggattggtaaccgctgttgatggcgtatgatatgcctgccaccatgccc 396
Query: 652 accaggttaatcacaagcacagtggtnnnnnnnatcagaagagttgtccacttgaacaca 711
|||||||| ||||| || || ||||| || || ||| | ||||||||||||||
Sbjct: 397 accaggttgatcacgaggacggtggtcggagggatgaggagactggtccacttgaacacg 456
Query: 712 tacagctcagcaaaatcaccatcatcatcggttgcctttgatgtgaccgtgaagtttgtg 771
|| ||||| ||||| || || || || ||| ||||||| || || ||||||||||| |||
Sbjct: 457 tatagctctgcaaagtcgccgtcctcgtcgtttgccttggaggtaaccgtgaagttggtg 516
Query: 772 tcgatccctgctagcac 788
|||||||| || |||||
Sbjct: 517 tcgatcccagccagcac 533
>gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. vulgare cDNA clone HU02B19
5-PRIME, mRNA sequence
Length = 496
Score = 192 bits (97), Expect = 4e-047
Identities = 142/157 (90%)
Strand = Plus / Minus
Query: 415 ttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaagca 474
||||||||| ||||||||| |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 169 ttctgggtatcggatatgaaagggtcgatcttcacccacaggagggagaagatggaggct 110
Query: 475 agaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgagaccc 534
|| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 109 aggaggatggaccaaacaatgacgatggttggcgtgcggttctgcttccccatgagaccc 50
Query: 535 ttcaggaaagggtagaggtggaggatcacccagattg 571
|| ||||| |||||||| |||||||||||||||||||
Sbjct: 49 ttgaggaaggggtagagatggaggatcacccagattg 13
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 255 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 314
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 374
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 375 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 434
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 435 agcgggccccaggattggtaaccgctgttgat 466
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 5', mRNA sequence
Length = 577
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Minus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 233 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 174
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 173 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 114
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 113 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 54
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 53 agcgggccccaggattggtaaccgctgttgat 22
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 3', mRNA sequence
Length = 528
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 296 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 355
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 356 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 415
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 416 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 475
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 476 agcgggccccaggattggtaaccgctgttgat 507
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 3', mRNA sequence
Length = 590
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 310 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 369
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 370 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 429
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 430 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 489
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 490 agcgggccccaggattggtaaccgctgttgat 521
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 336 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 395
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 396 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 455
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 456 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 515
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 516 agcgggccccaggattggtaaccgctgttgat 547
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 337 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 396
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 397 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 456
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 457 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 516
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 517 agcgggccccaggattggtaaccgctgttgat 548
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 182 bits (92), Expect = 4e-044
Identities = 182/212 (85%)
Strand = Plus / Minus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
||||| |||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 260 gccttttgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 201
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 200 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 141
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 140 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 81
Query: 592 agtggaccccatgattggtagccactgttgat 623
|| || ||||| |||||||| || ||||||||
Sbjct: 80 agcgggccccaggattggtaaccgctgttgat 49
>gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c07 3', mRNA sequence
Length = 611
Score = 182 bits (92), Expect = 4e-044
Identities = 173/200 (86%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 329 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 388
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 389 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 448
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagcttcccgaat 591
||||| ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct: 449 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 508
Query: 592 agtggaccccatgattggta 611
|| || ||||| ||||||||
Sbjct: 509 agcgggccccaggattggta 528
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 176 bits (89), Expect = 3e-042
Identities = 152/173 (87%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 366 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 425
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgaga 531
|| || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 426 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatgaga 485
Query: 532 cccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagctt 584
||||| ||||| |||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 486 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctt 538
>gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.H06, mRNA sequence
Length = 527
Score = 155 bits (78), Expect = 1e-035
Identities = 161/188 (85%), Gaps = 1/188 (0%)
Strand = Plus / Minus
Query: 436 gggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatg 495
||||||||||||||||| || || ||||| | ||| || || |||| |||||||| |||
Sbjct: 326 gggtcgatcttcacccagaggagggagaaga-ggaggcgaggaggatcgaccaaacnatg 268
Query: 496 acgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtgg 555
|| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 267 acnatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatgg 208
Query: 556 aggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggtagcca 615
|||||||||||||||| ||||| ||||| || || || || ||||| |||||||| ||
Sbjct: 207 aggatcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaaccg 148
Query: 616 ctgttgat 623
||||||||
Sbjct: 147 ctgttgat 140
>gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC010.D05, mRNA sequence
Length = 448
Score = 145 bits (73), Expect = 9e-033
Identities = 159/188 (84%), Gaps = 2/188 (1%)
Strand = Plus / Minus
Query: 436 gggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatg 495
||||||||||||||||| || || ||||| ||| ||| || |||| |||||||| |||
Sbjct: 325 gggtcgatcttcacccagaggagggagaagatg--agcgaggaggatcgaccaaacgatg 268
Query: 496 acgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtgg 555
||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct: 267 acgatggtcggcgtgcggttntgcttccccatgagacccttgaggaaggggtagagatgg 208
Query: 556 aggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggtagcca 615
|||||||||||||||| |||| | ||| || || || || ||||| |||||||| ||
Sbjct: 207 aggatcacccagattgagaagancngctntccaaagagcgggccccaggattggtaaccg 148
Query: 616 ctgttgat 623
||||||||
Sbjct: 147 ctgttgat 140
>gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16u 3', mRNA sequence
Length = 530
Score = 133 bits (67), Expect = 4e-029
Identities = 136/157 (86%), Gaps = 2/157 (1%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 371 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaanatggag 430
Query: 472 gcaagaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccat-gag 530
|| || |||| |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 431 gcgaggaggatcgaccaaacgatgacgatggtcggcgtgcggttctgcttccccatggag 490
Query: 531 acccttcaggaaagggtagaggtgga-ggatcaccca 566
|||||| ||||| |||||||| ||| ||||||||||
Sbjct: 491 acccttgaggaaggggtagagatggngggatcaccca 527
>gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012F17f, mRNA sequence
Length = 533
Score = 133 bits (67), Expect = 4e-029
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 430 atgaaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaa 489
||||| |||||||||||| |||| || || ||||| ||| | || || |||| ||||||
Sbjct: 159 atgaaagggtcgatcttcccccagaggagggagaagatgcaggcgagtaggatcgaccaa 100
Query: 490 acaatgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtag 549
|| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 99 actatggcgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 40
Query: 550 aggtggaggatcacccagattgcaaagaacagctt 584
|| || |||||||||||||||| ||||| |||||
Sbjct: 39 agatgcaggatcacccagattgagaagaagagctt 5
>gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 5', mRNA sequence
Length = 425
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 286 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 227
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 226 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 167
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 166 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 107
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 106 cactcgtcgatgccaacaccgctcca 81
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 559 atcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggtagccactg 618
|||||||||| |||||||| ||||||||||| || || |||||||| || ||||| |||
Sbjct: 412 atcacccagaaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctg 353
Query: 619 ttgat 623
|||||
Sbjct: 352 ttgat 348
>gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 5', mRNA sequence
Length = 668
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 553 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 494
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 493 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 434
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 433 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 374
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 373 cactcgtcgatgccaacaccgctcca 348
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||| ||||||||||| ||||| || | |||||| || |||||||| ||||| ||
Sbjct: 103 agaatttccactgaaccaagcgcccaccgaagcacttgattcagacgatctgaaaggttg 44
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 43 ataggggcagagcccttgaa 24
Score = 42.1 bits (21), Expect = 0.10
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 571 gcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
|||||||| ||||||||||| || || |||||||| || ||||| |||||||
Sbjct: 667 gcaaagaagagcttcccgaaaagcggtccccatgactgatagccgatgttgat 615
>gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 5', mRNA sequence
Length = 586
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 547 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 488
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 487 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 428
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 427 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 368
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 367 cactcgtcgatgccaacaccgctcca 342
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||| ||||||||||| ||||| || | |||||| || |||||||| ||||| ||
Sbjct: 97 agaatttccactgaaccaagcgcccaccgaagcacttgattcagacgatctgaaaggttg 38
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 37 ataggggcagagcccttgaa 18
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 307 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 248
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 247 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 188
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 187 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 128
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 127 cactcgtcgatgccaacaccgctcca 102
Score = 95.6 bits (48), Expect = 8e-018
Identities = 144/176 (81%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||| | |||||||||| || ||| || | |||||||||||
Sbjct: 544 acccacagcaaggagaagatgtatgcaagaaggatggcccagacgacaacgatggtcggc 485
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 484 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 425
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 424 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 369
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 218 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 159
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 158 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 99
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 98 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 39
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 38 cactcgtcgatgccaacaccgctcca 13
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 455 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 396
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 395 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 336
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 335 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 280
>gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. vulgare cDNA clone HF04C11
5-PRIME, mRNA sequence
Length = 629
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 620 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 561
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 560 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 501
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 500 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 441
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 440 cactcgtcgatgccaacaccgctcca 415
Score = 52.0 bits (26), Expect = 1e-004
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||| ||||||||||| ||||| || | |||||| || |||||||| ||||| ||
Sbjct: 170 agaatttccactgaaccaagcgcccaccgaagcacttgattcagacgatctgaaaggttg 111
Query: 1195 attggagcagaacccttgaagc 1216
|| || ||||| ||||| ||||
Sbjct: 110 ataggggcagagcccttaaagc 89
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 379 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 320
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 319 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 260
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 259 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 200
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 199 cactcgtcgatgccaacaccgctcca 174
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 616 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 557
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 556 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 497
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 496 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 441
>gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. vulgare cDNA clone HF16M09
5-PRIME, mRNA sequence
Length = 643
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 476 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 417
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 416 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 357
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 356 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 297
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 296 cactcgtcgatgccaacaccgctcca 271
Score = 65.9 bits (33), Expect = 7e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 523 cccatgagacccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagc 582
||||| || ||||| ||||| ||||| | ||||| |||||||||| |||||||| |||
Sbjct: 638 cccattagccccttgaggaatgggtacaagtggataatcacccagaaggcaaagaagagc 579
Query: 583 ttcccgaatagtggaccccatgattggtagccactgttgat 623
|||||||| || || |||||||| || ||||| ||||||||
Sbjct: 578 ttcccgaaaagcggtccccatgactgatagccgctgttgat 538
>gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51J24
5-PRIME, mRNA sequence
Length = 463
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 296 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 237
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 236 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 177
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 176 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 117
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 116 cactcgtcgatgccaacaccgctcca 91
Score = 65.9 bits (33), Expect = 7e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 523 cccatgagacccttcaggaaagggtagaggtggaggatcacccagattgcaaagaacagc 582
||||| || ||||| ||||| ||||| | ||||| |||||||||| |||||||| |||
Sbjct: 458 cccattagccccttgaggaatgggtacaagtggataatcacccagaaggcaaagaagagc 399
Query: 583 ttcccgaatagtggaccccatgattggtagccactgttgat 623
|||||||| || || |||||||| || ||||| ||||||||
Sbjct: 398 ttcccgaaaagcggtccccatgactgatagccgctgttgat 358
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 123 bits (62), Expect = 3e-026
Identities = 170/206 (82%)
Strand = Plus / Plus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 398 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 457
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 458 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 517
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 518 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 577
Query: 865 caatcctcaatgccaacaccactcca 890
|| || || ||||||||||| |||||
Sbjct: 578 cactcgtcgatgccaacaccgctcca 603
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 161 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 220
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 221 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 280
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 281 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 336
>gb|BM368747.1|BM368747 EBem08_SQ004_H23_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_H23 5', mRNA sequence
Length = 331
Score = 121 bits (61), Expect = 1e-025
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 415 ttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaagca 474
||||||||| ||||||||| |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 109 ttctgggtatcggatatgaaagggtcgatcttcacccacaggagggagaagatggaggct 50
Query: 475 agaaggacggaccaaacaatgacgatggtcggtgtgcggttctgcttcc 523
|| |||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 49 aggaggatggaccaaacaatgacgatggttggcgtgcggttctgcttcc 1
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 119 bits (60), Expect = 5e-025
Identities = 165/200 (82%)
Strand = Plus / Plus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 455 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 514
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 515 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 574
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 575 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 634
Query: 865 caatcctcaatgccaacacc 884
|| || || |||||||||||
Sbjct: 635 cactcgtcgatgccaacacc 654
Score = 95.6 bits (48), Expect = 8e-018
Identities = 144/176 (81%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 218 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 277
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 278 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 337
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| |||||||
Sbjct: 338 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgatgttgat 393
>gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_J19 5', mRNA sequence
Length = 439
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 405 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 346
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | |||||||| ||
Sbjct: 345 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccttgaaag 286
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 285 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 226
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 225 tcgtcaatgccaacaccactcca 203
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 113 bits (57), Expect = 3e-023
Identities = 162/197 (82%)
Strand = Plus / Plus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 462 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 521
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 522 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 581
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 582 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 641
Query: 865 caatcctcaatgccaac 881
|| || || ||||||||
Sbjct: 642 cactcgtcgatgccaac 658
Score = 95.6 bits (48), Expect = 8e-018
Identities = 144/176 (81%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 225 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 284
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 285 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 344
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| |||||||
Sbjct: 345 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgatgttgat 400
>gb|CA020225.1|CA020225 HV14L03r HV Hordeum vulgare subsp. vulgare cDNA clone HV14L03
5-PRIME, mRNA sequence
Length = 582
Score = 113 bits (57), Expect = 3e-023
Identities = 261/329 (79%)
Strand = Plus / Minus
Query: 1739 cccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaagaca 1798
||||||||||| ||||||||||||||||| |||||| ||| ||||||||||| || ||
Sbjct: 415 cccacataaactggtccttgaatgccatcgagacccctcaagttaatatcaaaaaacacg 356
Query: 1799 atgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtggaaactga 1858
|||||| ||||||||||| ||||| | || || ||||| || || || ||||| ||
Sbjct: 355 gtgttcctgtttgcatatctatcattcgtatcaatgccatcgaacctctgaggaaattgg 296
Query: 1859 acatagcaagttttccttcctagtgctggatccatcatgaaacacatagcctctctaaga 1918
||||| || ||||||||||||| || ||||| | || |||||||||||||| |||
Sbjct: 295 acataacagattttccttcctagattagggtccataagaaagcacatagcctctcttaga 236
Query: 1919 gctttgctgctattgaagtagtgatcacaatccacattaagaagataagcaccattcgtc 1978
|| |||| | |||| ||||||||||||||| | ||| | | || ||||| ||
Sbjct: 235 gcgctgctattgttgatgtagtgatcacaatcaagattcaacatgtactgcccattagta 176
Query: 1979 aggacagctgatacgcgaatcaaagcattcatggcaccagccttcttgtggtgctggaag 2038
|||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||
Sbjct: 175 aggacagctgatacacgaacaagtgcattcatggcaccagctttcttgtggtgctggaat 116
Query: 2039 cctggcctcttttcacgagaaacataaac 2067
|| || | || |||||||| ||||||||
Sbjct: 115 ccaggacgtttctcacgagacacataaac 87
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 113 bits (57), Expect = 3e-023
Identities = 162/197 (82%)
Strand = Plus / Plus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 455 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 514
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 515 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 574
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 575 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 634
Query: 865 caatcctcaatgccaac 881
|| || || ||||||||
Sbjct: 635 cactcgtcgatgccaac 651
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 218 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 277
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 278 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 337
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 338 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 393
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 374 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 315
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 314 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 255
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 254 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 195
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 194 tcgtcaatgccaacaccactcca 172
Score = 93.7 bits (47), Expect = 3e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 493 atgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagagg 552
||||| || |||||||||||||| ||| | ||||| |||||||| ||||| ||||| | |
Sbjct: 569 atgacaatcgtcggtgtgcggttttgcctgcccataagacccttgaggaaggggtataag 510
Query: 553 tggaggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggtag 612
|| | |||||||||| |||||||| ||||||||||| || || ||||| ||||||||
Sbjct: 509 tgaacaatcacccagaaggcaaagaagagcttcccgaagagcggcccccaagattggtaa 450
Query: 613 ccactgttgat 623
|||||||||||
Sbjct: 449 ccactgttgat 439
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 375 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 316
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 315 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 256
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 255 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 196
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 195 tcgtcaatgccaacaccactcca 173
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 615 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 556
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 555 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 496
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 495 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 440
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 382 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 323
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 322 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 263
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 262 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 203
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 202 tcgtcaatgccaacaccactcca 180
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 622 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 563
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 562 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 503
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 502 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 447
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 573 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 514
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 513 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 454
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 453 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 394
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 393 tcgtcaatgccaacaccactcca 371
Score = 103 bits (52), Expect = 3e-020
Identities = 144/175 (82%)
Strand = Plus / Minus
Query: 449 cccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggtg 508
||||||||| ||||| || ||||| || ||||| | ||| || ||||| || |||||||
Sbjct: 812 cccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggtg 753
Query: 509 tgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccaga 568
||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | ||||||||||
Sbjct: 752 tgcggttttgcntgcccataagacccttgaggaaggggtataagtgaacaatcacccaga 693
Query: 569 ttgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
|||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 692 aggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 638
Score = 54.0 bits (27), Expect = 3e-005
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatt 1193
||||||||||| |||||||||||||| || | ||| ||||| |||||||| ||||||||
Sbjct: 126 agaatttcaacggaaccaagagcccaccggagcac-tggttcagacgatctgaaagatt 69
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 335 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 276
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 275 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 216
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 215 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 156
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 155 tcgtcaatgccaacaccactcca 133
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 575 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 516
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 515 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 456
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 455 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 400
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 214 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 155
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 154 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 95
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 94 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 35
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 34 tcgtcaatgccaacaccactcca 12
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 454 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 395
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 394 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 335
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 334 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 279
>gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
5-PRIME, mRNA sequence
Length = 579
Score = 109 bits (55), Expect = 5e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 499 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 440
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 439 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 380
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 379 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 320
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 319 tcgtcaatgccaacaccactcca 297
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagccca 1160
||||||||||| ||||||||||||||
Sbjct: 52 agaatttcaacggaaccaagagccca 27
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 212 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 153
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|| ||||| ||||| |||||| | |||||||| || || || || || | ||||||||||
Sbjct: 152 gcttttgaagtgacagtgaagctggtgtcgatgccagcaagtaccttcaggagaccttgg 93
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||||||
Sbjct: 92 aagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttcattcctccac 33
Query: 865 ca 866
||
Sbjct: 32 ca 31
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 449 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 390
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 389 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 330
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 329 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 274
>gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004I03f, mRNA sequence
Length = 634
Score = 103 bits (52), Expect = 3e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||| | || || || || || | |||
Sbjct: 454 agaagcgtcgtccacttgaacatgtagagctcagcanagtcgccttcttcgtcattagcc 395
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 394 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 335
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaa 867
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 334 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccac 275
Query: 868 tcctcaatgccaacaccactcca 890
|| ||||||||||||||||||||
Sbjct: 274 tcgtcaatgccaacaccactcca 252
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 400 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 459
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 460 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 519
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 520 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 575
Score = 36.2 bits (18), Expect = 6.2
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaa 725
||||| || ||||||||||||| || |||||||||||
Sbjct: 640 agaagcgtcgtccacttgaacatgtagagctcagcaaa 677
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 434 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 375
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 374 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 315
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 314 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 259
Score = 77.8 bits (39), Expect = 2e-012
Identities = 144/179 (80%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 194 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 135
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 134 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 75
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccacca 866
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 74 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 16
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 433 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 374
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 373 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 314
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 313 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 258
Score = 77.8 bits (39), Expect = 2e-012
Identities = 144/179 (80%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 193 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 134
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 133 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 74
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccacca 866
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 73 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 15
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 362 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 421
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 422 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 481
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 482 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 537
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 322 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 381
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 382 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 441
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 442 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 497
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 562 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 621
Query: 748 tttgatgtgaccgtgaagtttgtgtcga 775
||||| ||||| |||||||| |||||||
Sbjct: 622 tttgaggtgacagtgaagttggtgtcga 649
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 379 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 438
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 439 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 498
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 499 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 554
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 379 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 438
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 439 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 498
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 499 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 554
Score = 36.2 bits (18), Expect = 6.2
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaa 725
||||| || ||||||||||||| || |||||||||||
Sbjct: 619 agaagcgtcgtccacttgaacatgtagagctcagcaaa 656
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 245 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 304
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 305 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 364
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 365 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 420
Score = 50.1 bits (25), Expect = 4e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 485 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 544
Query: 748 tttgatgtgaccgtgaagtttgtgtcgat 776
||||| ||||| |||||||| ||||||||
Sbjct: 545 tttgaggtgacagtgaagttggtgtcgat 573
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 162 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 221
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 222 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 281
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 282 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 337
Score = 63.9 bits (32), Expect = 3e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 685 atcagaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggtt 744
||||||||||| ||||||||||||| || ||||| ||||||||| ||| || |||| |
Sbjct: 399 atcagaagagtcgtccacttgaacatgtagagctcggcaaaatcattatcttcgtcggat 458
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgat 776
|| ||||| ||||| |||||| | ||||||||
Sbjct: 459 gcttttgaagtgacagtgaagctggtgtcgat 490
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 379 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 438
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 439 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 498
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 499 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 554
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 365 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 424
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 425 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 484
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 485 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 540
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 338 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 397
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 398 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 457
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 458 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 513
Score = 50.1 bits (25), Expect = 4e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 578 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 637
Query: 748 tttgatgtgaccgtgaagtttgtgtcgat 776
||||| ||||| |||||||| ||||||||
Sbjct: 638 tttgaggtgacagtgaagttggtgtcgat 666
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 432 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 373
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 372 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 313
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 312 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 257
Score = 77.8 bits (39), Expect = 2e-012
Identities = 144/179 (80%)
Strand = Plus / Minus
Query: 688 agaagagttgtccacttgaacacatacagctcagcaaaatcaccatcatcatcggttgcc 747
||||| || ||||||||||||| || ||||||||||| || || || || || | |||
Sbjct: 192 agaagcgtcgtccacttgaacatgtagagctcagcaaagtcgccttcttcgtcattagcc 133
Query: 748 tttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttggaac 807
||||| ||||| |||||||| |||||||| || || ||||| || | ||||| || ||
Sbjct: 132 tttgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctgaaag 73
Query: 808 acagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccacca 866
|| ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||||
Sbjct: 72 acggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccacca 14
>gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_K11 5', mRNA sequence
Length = 606
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 194 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 135
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 134 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 75
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 74 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 19
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 222 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 163
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 162 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 103
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 102 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 47
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||
Sbjct: 225 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 166
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||||||| ||||| || ||||| ||||| ||||| | ||||| |||||||||
Sbjct: 165 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 106
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 105 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgat 50
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 97.6 bits (49), Expect = 2e-018
Identities = 148/181 (81%)
Strand = Plus / Plus
Query: 431 tgaaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaaa 490
|||||||||||||| | ||||| ||||| ||||| ||||| || || || |||||||| |
Sbjct: 216 tgaaggggtcgatcctgacccaaagcagggagaacatggaggctagcagcacggaccata 275
Query: 491 caatgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtaga 550
||||| ||||| || || | ||||||| ||||||||| |||||| ||||| |||||||
Sbjct: 276 tgatgacaatggtgggcgtcctgttctgcctccccatgaaacccttgaggaacgggtaga 335
Query: 551 ggtggaggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggt 610
| || | ||||||||||| || ||||| ||||| |||||||| || ||||| || ||||
Sbjct: 336 gatgcacgatcacccagaaggcgaagaagagcttaccgaatagcggcccccacgactggt 395
Query: 611 a 611
|
Sbjct: 396 a 396
>gb|BQ665967.1|BQ665967 HZ01L16u HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
3-PRIME, mRNA sequence
Length = 423
Score = 97.6 bits (49), Expect = 2e-018
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 415 ttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaagca 474
||||||||| ||||||||| |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 328 ttctgggtatcggatatgaaagggtcgatcttcacccacaggagggagaagatggaggct 387
Query: 475 agaaggacggaccaaacaatgacgatggt 503
|| |||| |||||||||||||||||||||
Sbjct: 388 aggaggatggaccaaacaatgacgatggt 416
>gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0017K05f, mRNA sequence
Length = 750
Score = 95.6 bits (48), Expect = 8e-018
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
|||||||||||||| || |||||||||||||| || ||| ||| ||||||||||| |||
Sbjct: 479 gttcccacataaactggcccttgaatgccatcaaggcccctcaagttaatatcaaaaaag 420
Query: 1796 acaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtggaaac 1855
||| |||||| ||| ||||||||||||| | || ||||||||||| || ||||| |||
Sbjct: 419 acagtgttcctgttcgcatatcgatcattcctatcaataccatcaaacctctgtgggaac 360
Query: 1856 tgaacata 1863
|| |||||
Sbjct: 359 tgcacata 352
Score = 87.7 bits (44), Expect = 2e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgagaaaca 2062
||||||||||||||||||||||||||||||||||| || || | |||||||||||| |||
Sbjct: 212 gcattcatggcaccagccttcttgtggtgctggaatccaggacgcttttcacgagacaca 153
Query: 2063 taaacaagccgtggcaactcattcccatccgtgtcaagcccaccactgtggcccaagaat 2122
|| || | || || | |||||| || || || ||||| ||||||||||| || | |||
Sbjct: 152 tagaccaaacgggggagctcattaccctcggtatcaaggccaccactgtgaccaaggaaa 93
Query: 2123 acttggatcattccnggatgatc 2145
|| || |||||||| || |||||
Sbjct: 92 acctgaatcattccagggtgatc 70
>gb|BG368813.1|BG368813 HVSMEi0020M13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020M13f, mRNA sequence
Length = 870
Score = 95.6 bits (48), Expect = 8e-018
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
|||||||||||||| || |||||||||||||| || ||| ||| ||||||||||| |||
Sbjct: 211 gttcccacataaactggcccttgaatgccatcaaggcccctcaagttaatatcaaaaaag 152
Query: 1796 acaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtggaaac 1855
||| |||||| ||| ||||||||||||| | || ||||||||||| || ||||| |||
Sbjct: 151 acagtgttcctgttcgcatatcgatcattcctatcaataccatcaaacctctgtgggaac 92
Query: 1856 tgaacata 1863
|| |||||
Sbjct: 91 tgcacata 84
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 95.6 bits (48), Expect = 8e-018
Identities = 144/176 (81%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 236 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 295
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| | |||||| ||||| ||||| | ||| | |||||||||
Sbjct: 296 gtgcggttttgcctgcccataaaacccttgaggaaggggtataagtgaacaatcacccag 355
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgat 623
| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||
Sbjct: 356 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgat 411
>gb|CA009062.1|CA009062 HU13B03r HU Hordeum vulgare subsp. vulgare cDNA clone HU13B03
5-PRIME, mRNA sequence
Length = 588
Score = 95.6 bits (48), Expect = 8e-018
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
|||||||||||||| || |||||||||||||| || ||| ||| ||||||||||| |||
Sbjct: 334 gttcccacataaactggcccttgaatgccatcaaggcccctcaagttaatatcaaaaaag 275
Query: 1796 acaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtggaaac 1855
||| |||||| ||| ||||||||||||| | || ||||||||||| || ||||| |||
Sbjct: 274 acagtgttcctgttcgcatatcgatcattcctatcaataccatcaaacctctgtgggaac 215
Query: 1856 tgaacata 1863
|| |||||
Sbjct: 214 tgcacata 207
Score = 79.8 bits (40), Expect = 5e-013
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgaga 2058
||||||||||||||||||||||||||||||||||| || || | ||||||||||||
Sbjct: 67 gcattcatggcaccagccttcttgtggtgctggaatccaggacgcttttcacgaga 12
>gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
5-PRIME, mRNA sequence
Length = 591
Score = 93.7 bits (47), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 745 gcctttgatgtgaccgtgaagtttgtgtcgatccctgctagcacttttaagagaccttgg 804
|||| ||| ||||| |||||||| |||||||| || || ||||| || | ||||| ||
Sbjct: 551 gcctntgaggtgacagtgaagttggtgtcgataccggcaagcaccttcagaagaccctga 492
Query: 805 aacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccac 864
|| || ||||| ||||| |||||| | || ||||||||||| ||||| ||||| ||||||
Sbjct: 491 aagacggcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccac 432
Query: 865 caatcctcaatgccaacaccactcca 890
|| || ||||||||||||||||||||
Sbjct: 431 cactcgtcaatgccaacaccactcca 406
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||||| |||||||||||||| || | ||||||||| |||||||| ||||||||
Sbjct: 161 agaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctgaaagattg 102
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 101 atgggggcagatcccttgaa 82
>gb|BQ663315.1|BQ663315 HU02B19u HU Hordeum vulgare subsp. vulgare cDNA clone HU02B19
3-PRIME, mRNA sequence
Length = 415
Score = 93.7 bits (47), Expect = 3e-017
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 415 ttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaagca 474
||||||||| ||||||||| |||||||||||||||||||| || ||||| ||||| ||
Sbjct: 329 ttctgggtatcggatatgaaagggtcgatcttcacccacaggagggagaagatggaggct 388
Query: 475 agaaggacggaccaaacaatgacgatg 501
|| |||| |||||||||||||||||||
Sbjct: 389 aggaggatggaccaaacaatgacgatg 415
>gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. vulgare cDNA clone HX10A06
5-PRIME, mRNA sequence
Length = 627
Score = 91.7 bits (46), Expect = 1e-016
Identities = 199/250 (79%)
Strand = Plus / Minus
Query: 2447 tcatcagaaacataacatgatactttgtcaacagggtaatccacagcaagaatggacagg 2506
|||||||| ||||| || |||||||||||||||||||| ||||||||||| || || ||
Sbjct: 605 tcatcagatacatagcaagatactttgtcaacagggtagtccacagcaaggatagaaagc 546
Query: 2507 acagtgttgccagtaattagaggaggttccttaagtggatccactgtactaacaaagaca 2566
||||| || |||| | |||||||| ||||| | |||||||| ||||| ||||| |
Sbjct: 545 acagtatttgcagtgacgagaggaggctccttcataggatccacagtactgacaaaaatg 486
Query: 2567 tcgattggagccaactgggatggctcaccctccctatcatatctcaatgcaagtctatcg 2626
|| | ||||||||||| || |||||| |||| ||||| || || || || || ||
Sbjct: 485 tcaacaggagccaactgagacaactcaccatcccggtcataccttaaagccagcctgtca 426
Query: 2627 aggtaagtttcacggttgataggataccactttgggaactgatctagaagccaagacaaa 2686
|||||||||||||| || | ||| ||||||| ||||||||||| | || ||| || |||
Sbjct: 425 aggtaagtttcacgattcactggagaccacttggggaactgatccaaaatccaggaaaaa 366
Query: 2687 gcaaaccaaa 2696
||||||||||
Sbjct: 365 gcaaaccaaa 356
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 89.7 bits (45), Expect = 5e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 430 atgaaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaa 489
||||||||||||||| | ||||||| || ||||| ||||| || || ||||| |||||
Sbjct: 216 atgaaggggtcgatcctgacccacacaagggagaagatggaggcgagcaggacagaccag 275
Query: 490 acaatgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtag 549
| | |||||||| || || ||||||||| |||||||||| ||||| ||||| ||||||
Sbjct: 276 agcacaacgatggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtag 335
Query: 550 aggtggaggatcacccagattgcaaagaacagcttcccgaa 590
||||||| ||| ||||||| | ||||| |||||||||||
Sbjct: 336 aggtggacgatgacccagaaggagaagaagagcttcccgaa 376
>gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd24c20, mRNA sequence
Length = 505
Score = 87.7 bits (44), Expect = 2e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgagaaaca 2062
||||||||||||||||||||||||||||||||||| || || | |||||||||||| |||
Sbjct: 257 gcattcatggcaccagccttcttgtggtgctggaatccaggacgcttttcacgagacaca 198
Query: 2063 taaacaagccgtggcaactcattcccatccgtgtcaagcccaccactgtggcccaagaat 2122
|| || | || || | |||||| || || || ||||| ||||||||||| || | |||
Sbjct: 197 tagaccaaacgggggagctcattaccctcggtatcaaggccaccactgtgaccaaggaaa 138
Query: 2123 acttggatcattccnggatgatc 2145
|| || |||||||| || |||||
Sbjct: 137 acctgaatcattccagggtgatc 115
Score = 73.8 bits (37), Expect = 3e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 1755 cttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgcat 1814
||||||||||||| || ||| ||| ||||||||||| |||||| |||||| ||| ||||
Sbjct: 505 cttgaatgccatcaaggcccctcaagttaatatcaaaaaagacagtgttcctgttcgcat 446
Query: 1815 atcgatcatgcaagtctataccatcaaatctttgtggaaactgaacata 1863
||||||||| | || ||||||||||| || ||||| ||||| |||||
Sbjct: 445 atcgatcattcctatcaataccatcaaacctctgtgggaactgcacata 397
>gb|BE193304.2|BE193304 HVSMEh0080I07f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0080I07f, mRNA sequence
Length = 682
Score = 87.7 bits (44), Expect = 2e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
|||||||||||||| || | |||||||||||| || ||| ||| ||||||||||| |||
Sbjct: 400 gttcccacataaactggcctttgaatgccatcaaggcccctcaagttaatatcaaaaaag 341
Query: 1796 acaatgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtggaaac 1855
||| |||||| ||| ||||||||||||| | || ||||||||||| || ||||| |||
Sbjct: 340 acagtgttcctgttcgcatatcgatcattcctatcaataccatcaaacctctgtgggaac 281
Query: 1856 tgaacata 1863
|| |||||
Sbjct: 280 tgcacata 273
Score = 83.8 bits (42), Expect = 3e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgagaaaca 2062
||||||||||||||||||||||||||||||||||| || || | |||||||||||| |||
Sbjct: 133 gcattcatggcaccagccttcttgtggtgctggaatccaggacgcttttcacgagacaca 74
Query: 2063 ta 2064
||
Sbjct: 73 ta 72
Score = 36.2 bits (18), Expect = 6.2
Identities = 54/66 (81%)
Strand = Plus / Minus
Query: 1885 tggatccatcatgaaacacatagcctctctaagagctttgctgctattgaagtagtgatc 1944
||||||||| | ||| |||||||| || | | ||| |||||| | |||| |||||||||
Sbjct: 251 tggatccattaggaagcacatagcttcccggacagccttgctgttgttgatgtagtgatc 192
Query: 1945 acaatc 1950
||||||
Sbjct: 191 acaatc 186
>gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C0110 5-PRIME, mRNA sequence
Length = 710
Score = 87.7 bits (44), Expect = 2e-015
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 1740 ccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaagacaa 1799
|||||||||| || |||||||||||||| || ||| ||| ||||||||||| ||||||
Sbjct: 478 ccacataaactggcccttgaatgccatcaaggcccctcaagttaatatcaaaaaagacag 419
Query: 1800 tgttccggtttgcatatcgatcatgcaagtctataccatcaaatctttgtggaaactgaa 1859
|||||| ||| ||||||||||||| | || ||||||||||| || ||||| ||||| |
Sbjct: 418 tgttcctgttcgcatatcgatcattcctatcaataccatcaaacctctgtgggaactgca 359
Query: 1860 cata 1863
||||
Sbjct: 358 cata 355
Score = 87.7 bits (44), Expect = 2e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgagaaaca 2062
||||||||||||||||||||||||||||||||||| || || | |||||||||||| |||
Sbjct: 215 gcattcatggcaccagccttcttgtggtgctggaatccaggacgcttttcacgagacaca 156
Query: 2063 taaacaagccgtggcaactcattcccatccgtgtcaagcccaccactgtggcccaagaat 2122
|| || | || || | |||||| || || || ||||| ||||||||||| || | |||
Sbjct: 155 tagaccaaacgggggagctcattaccctcggtatcaaggccaccactgtgaccaaggaaa 96
Query: 2123 acttggatcattccnggatgatc 2145
|| || |||||||| || |||||
Sbjct: 95 acctgaatcattccagggtgatc 73
>gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03B21r 3', mRNA sequence
Length = 619
Score = 83.8 bits (42), Expect = 3e-014
Identities = 153/190 (80%)
Strand = Plus / Plus
Query: 433 aaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaaaca 492
|||||||||||||| ||||| || || ||||| | || || || ||||||||||| |
Sbjct: 253 aaggggtcgatcttgacccagaggagggagaagaccgaggccagcaggacggaccagagt 312
Query: 493 atgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagagg 552
||||||||||| || || ||||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 313 atgacgatggtgggagtccggttctgccggcccatgagacccttgaggaacgggtacagg 372
Query: 553 tggaggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggtag 612
|| | |||||||| || | ||||||| ||| ||||| || || |||||||| | ||||
Sbjct: 373 tgcataatcacccacatggagaagaacaccttgccgaagagcggcccccatgactcgtag 432
Query: 613 ccactgttga 622
|| |||||||
Sbjct: 433 ccgctgttga 442
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 697 gtccacttgaacacatacagctca 720
||||||||||||||||||||||||
Sbjct: 520 gtccacttgaacacatacagctca 543
>gb|AL503288.1|AL503288 AL503288 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H19T 5', mRNA sequence
Length = 146
Score = 83.8 bits (42), Expect = 3e-014
Identities = 107/129 (82%)
Strand = Plus / Minus
Query: 882 accactccatcgaagctccaaaataccagtggcgaagatagaagcaaaaagcaggatgaa 941
|||||||||||| |||||||| ||||||||||| || || || ||||| | || || ||
Sbjct: 146 accactccatcggagctccaatataccagtggcaaaaatggacgcaaacatgagaataaa 87
Query: 942 gaacgccccagcataattgctaatcgcaggaataataaatttgttggtgagtaaacagat 1001
|||| |||||||||||| || ||| ||||||| |||| ||||||||||| | |||||
Sbjct: 86 gaacatcccagcataattactgatctcaggaatgataancttgttggtgaggaggcagat 27
Query: 1002 agcaggaag 1010
|||||||||
Sbjct: 26 agcaggaag 18
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 83.8 bits (42), Expect = 3e-014
Identities = 131/161 (81%)
Strand = Plus / Plus
Query: 430 atgaaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaa 489
||||||||||||||| | ||||||| || ||||| ||||| || || ||||| |||||
Sbjct: 261 atgaaggggtcgatcctgacccacacaagggagaagatggaggcgagcaggacagaccag 320
Query: 490 acaatgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtag 549
| | |||||||| || || ||||||||| |||||||||| ||||| ||||| ||||||
Sbjct: 321 agcacaacgatggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtag 380
Query: 550 aggtggaggatcacccagattgcaaagaacagcttcccgaa 590
||||||| ||| ||||| | | ||||| |||||||||||
Sbjct: 381 aggtggacgatgacccanaaggagaagaagagcttcccgaa 421
>gb|BM442929.2|BM442929 EBro02_SQ001_O08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_O08 5', mRNA sequence
Length = 463
Score = 83.8 bits (42), Expect = 3e-014
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
|||||||||||||| || |||||||||||||| || ||| ||| ||||||||||| |||
Sbjct: 86 gttcccacataaactggcccttgaatgccatcaaggcccctcaagttaatatcaaaaaag 27
Query: 1796 acaatgttccggtttgcatatcgatc 1821
||| |||||| ||| |||||||||||
Sbjct: 26 acagtgttcctgttcgcatatcgatc 1
>gb|CB882206.1|CB882206 HL01D01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01D01
3-PRIME, mRNA sequence
Length = 700
Score = 83.8 bits (42), Expect = 3e-014
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 2618 agtctatcgaggtaagtttcacggttgataggataccactttgggaactgatctagaagc 2677
|||||||| ||||| || || |||||||| ||| ||||||| ||||||||||| || | |
Sbjct: 531 agtctatcaaggtaggtctcccggttgattggaaaccacttcgggaactgatccagtatc 472
Query: 2678 caagacaaagcaaaccaaacttcacaaataacagatacaagccaca 2723
|| || ||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 471 caggataaagcaaaccaaatctcacatataacagataaaagccaca 426
Score = 40.1 bits (20), Expect = 0.40
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 2449 atcagaaacataacatgatactttgtcaacagggtaatccacagcaagaatggacaggac 2508
|||||| ||||| || || || ||||| || || ||||| |||||||||||||| || ||
Sbjct: 700 atcagatacatagcaagagaccttgtccacgggataatcaacagcaagaatggatagcac 641
Query: 2509 agtgttgccagt 2520
|||||| ||||
Sbjct: 640 ggtgttggcagt 629
>gb|CB883651.1|CB883651 HQ02O03w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02O03
3-PRIME, mRNA sequence
Length = 601
Score = 83.8 bits (42), Expect = 3e-014
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 2618 agtctatcgaggtaagtttcacggttgataggataccactttgggaactgatctagaagc 2677
|||||||| ||||| || || |||||||| ||| ||||||| ||||||||||| || | |
Sbjct: 595 agtctatcaaggtaggtctcccggttgattggaaaccacttcgggaactgatccagtatc 536
Query: 2678 caagacaaagcaaaccaaacttcacaaataacagatacaagccaca 2723
|| || ||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 535 caggataaagcaaaccaaatctcacatataacagataaaagccaca 490
>gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
5-PRIME, mRNA sequence
Length = 656
Score = 81.8 bits (41), Expect = 1e-013
Identities = 406/527 (77%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 1970 ccattcgtcaggacagctgatacgcgaatcaaagcattcatggcaccagccttcttgtgg 2029
||||| || |||||||||||||| |||| | ||||||||||||||||| |||||||||
Sbjct: 536 ccattagtaaggacagctgatacacgaacaagtgcattcatggcaccagctttcttgtgg 477
Query: 2030 tgctggaagcctggcctcttttcacgagaaacataaacaagccgtggcaactcattccca 2089
|||||||| || || | || |||||||| |||||||| | || || | |||||| |||
Sbjct: 476 tgctggaatccaggacgtttctcacgagacacataaaccaaacgaggaagctcattgcca 417
Query: 2090 tccgtgtcaagcccaccactgtggcccaagaatacttggatcattccnggatgatctcta 2149
|| || || || || ||||| || || | ||| || || | |||||| ||||| || |||
Sbjct: 416 tcagtatcgaggcctccactatgaccaaggaaaacctgaagcattccaggatggtcccta 357
Query: 2150 gggttattcccaggccanggagtgccatcagccatggtccagccctcctcaggtattttt 2209
| || ||||||||||| || ||||| || |||| |||| || |||||||| | |||
Sbjct: 356 gtattgttcccaggccaaggtgtgccgtcttgcatgatccatccttcctcaggaactttc 297
Query: 2210 tgcgcttttgcaacaagggcatcgatccgtactttgaactcttcatactccctcttcata 2269
| ||||| || |||||| || | || ||||||||||||||||| || ||||||||
Sbjct: 296 tcggctttggctacaaggctattaacgcgaactttgaactcttcatattctctcttcatg 237
Query: 2270 gcccgcctttctttcacaaaagaaggttgtattttgtcctttaggtaatctatctttcga 2329
|| || | ||||| || || |||| || | |||||| || | | |||| || || ||
Sbjct: 236 gctcgacggtctttaacgaatgaagtctgaactttgtctttcaagaaatcaattttctga 177
Query: 2330 gcaaagtaaaactctggagccctaggttcaatgttgtgtttcttgcaaaagggaacccat 2389
|||||||| ||||||| || || ||||| ||||| | || || ||||| || ||||||
Sbjct: 176 gcaaagtaccactctggtgctctgggttctatgttatactttttacaaaacggtacccat 117
Query: 2390 ttccttgcaaactctgcggtttcagatagagcttcaaaagtcaacatagctgaaccgtca 2449
|| || |||||||||| || |||| || || ||||| || | ||| || | || |||
Sbjct: 116 tttctagcaaactctgaagtctcagcaagtgcatcaaaggtaagcatcgcagctccatca 57
Query: 2450 tcagaaacataacatgatactttgtcaacagggtaatccacagcaag 2496
||||| ||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 56 tcagatacatagcaagatac-ttgtcaacagggtagtccacagcaag 11
>gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0024F09f, mRNA sequence
Length = 900
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||||| |||||||||||||| || | ||||||||| |||||||| ||||||||
Sbjct: 268 agaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctgaaagattg 209
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 208 atgggggcagatcccttgaa 189
Score = 56.0 bits (28), Expect = 7e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1252 cctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccat 1311
|||||||| ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||
Sbjct: 151 cctcttgcgtgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaa 92
Query: 1312 ccgatctc 1319
|| |||||
Sbjct: 91 ccaatctc 84
>gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 5', mRNA sequence
Length = 615
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 811 gcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcatttctccaccaatcc 870
||||| ||||| |||||| | || ||||||||||| ||||| ||||| |||||||| ||
Sbjct: 591 gcaaacagatgggcagagatacctccaatgacccagaactgttcattcctccaccactcg 532
Query: 871 tcaatgccaacaccactcca 890
||||||||||||||||||||
Sbjct: 531 tcaatgccaacaccactcca 512
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||||| |||||||||||||| || | ||||||||| |||||||| ||||||||
Sbjct: 267 agaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctgaaagattg 208
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 207 atgggggcagatcccttgaa 188
Score = 56.0 bits (28), Expect = 7e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1252 cctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccat 1311
|||||||| ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||
Sbjct: 150 cctcttgcgtgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaa 91
Query: 1312 ccgatctc 1319
|| |||||
Sbjct: 90 ccaatctc 83
>gb|BJ464018.1|BJ464018 BJ464018 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 5', mRNA sequence
Length = 419
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||||| |||||||||||||| || | ||||||||| |||||||| ||||||||
Sbjct: 118 agaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctgaaagattg 59
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 58 atgggggcagatcccttgaa 39
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 835 ccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacaccactcca 890
||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct: 419 ccaatgacccagaactgttcattcctccaccactcgtcaatgccaacaccactcca 364
>gb|BQ661984.1|BQ661984 HR01B16u HR Hordeum vulgare subsp. vulgare cDNA clone HR01B16
3-PRIME, mRNA sequence
Length = 427
Score = 79.8 bits (40), Expect = 5e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 336 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaatatggag 395
Query: 472 gcaagaaggacggaccaaacaatgacgatggt 503
|| || |||| |||||||| |||||||||||
Sbjct: 396 gcgaggaggatcgaccaaacgatgacgatggt 427
>gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. vulgare cDNA clone HB107G12
similar to (AF200533) cellulose synthase-9 [Zea mays],
mRNA sequence
Length = 623
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||||| |||||||||||||| || | ||||||||| |||||||| ||||||||
Sbjct: 179 agaatttcaacggaaccaagagcccaccggagcacttggttcagacgatctgaaagattg 120
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 119 atgggggcagatcccttgaa 100
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1252 cctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatcca 1310
|||||||| ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||
Sbjct: 62 cctcttgcgtgcatcttgaatccagtgagaatatcttctgtgacagatccataaatcca 4
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 835 ccaatgacccaaaactgctcatttctccaccaatcctcaatgccaacaccactcca 890
||||||||||| ||||| || || ||||||| | ||||||||||||||||||||
Sbjct: 479 ccaatgacccagaactgttctttcctccacccctggtcaatgccaacaccactcca 424
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 496 acgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtgg 555
|||||||| || || ||||||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct: 603 acgatggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtagaggtgg 544
Query: 556 aggatcacccagattgcaaagaacagcttcccgaa 590
| ||| ||||||| | ||||| |||||||||||
Sbjct: 543 acgatgacccagaaggagaagaagagcttcccgaa 509
>gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. vulgare cDNA clone HV12L21
3-PRIME, mRNA sequence
Length = 515
Score = 77.8 bits (39), Expect = 2e-012
Identities = 117/143 (81%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 363 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 422
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 423 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 482
Query: 568 attgcaaagaacagcttcccgaa 590
| |||||||| |||||||||||
Sbjct: 483 aaggcaaagaagagcttcccgaa 505
>gb|CA026701.1|CA026701 HZ56L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56L02
5-PRIME, mRNA sequence
Length = 193
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 2618 agtctatcgaggtaagtttcacggttgataggataccactttgggaactgatctagaagc 2677
|||||||| ||||| || || |||||||| ||| ||||||| ||||||||||| || | |
Sbjct: 176 agtctatcaaggtaggtctcccggttgattggaaaccacttcgggaactgatccagtatc 117
Query: 2678 caagacaaagcaaaccaaacttcacaaataacagatacaagcc 2720
|| || ||||||||||||| ||||| |||||||||| |||||
Sbjct: 116 caggataaagcaaaccaaatctcacatataacagataaaagcc 74
>gb|BF624752.2|BF624752 HVSMEa0017K09f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0017K09f, mRNA sequence
Length = 789
Score = 75.8 bits (38), Expect = 7e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgagaaaca 2062
|||||||||||||||||||| |||||||||||||| || || | |||||||||||| |||
Sbjct: 214 gcattcatggcaccagccttattgtggtgctggaatccaggacgcttttcacgagacaca 155
Query: 2063 ta 2064
||
Sbjct: 154 ta 153
Score = 63.9 bits (32), Expect = 3e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
||||| |||||||| || ||| ||||||||| || ||| ||| ||||||||||| |||
Sbjct: 481 gttccgacataaactggccctgaaatgccatcaaggcccctcaagttaatatcaaaaaag 422
Query: 1796 acaatgttccggtttgcatatcgatcat 1823
||| |||||| ||| |||||||||||||
Sbjct: 421 acagtgttcctgttcgcatatcgatcat 394
Score = 36.2 bits (18), Expect = 6.2
Identities = 54/66 (81%)
Strand = Plus / Minus
Query: 1885 tggatccatcatgaaacacatagcctctctaagagctttgctgctattgaagtagtgatc 1944
||||||||| | ||| |||||||| || | | ||| |||||| | |||| |||||||||
Sbjct: 332 tggatccattaggaagcacatagcttcccggacagcattgctgttgttgatgtagtgatc 273
Query: 1945 acaatc 1950
||||||
Sbjct: 272 acaatc 267
>gb|AL504419.1|AL504419 AL504419 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05D18V 5', mRNA sequence
Length = 671
Score = 73.8 bits (37), Expect = 3e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||| | |||||||||||||| || | ||||||||| |||||||| ||||||||
Sbjct: 602 agaatttcancggaaccaagagcccaccggagcacttggttcagacgatctgaaagattg 543
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 542 atgggggcagatcccttgaa 523
Score = 56.0 bits (28), Expect = 7e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1252 cctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccat 1311
|||||||| ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||
Sbjct: 485 cctcttgcgtgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaa 426
Query: 1312 ccgatctc 1319
|| |||||
Sbjct: 425 ccaatctc 418
>gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L01f, mRNA sequence
Length = 500
Score = 71.9 bits (36), Expect = 1e-010
Identities = 129/160 (80%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 160 acccacagcaaggagaagattgaagccagtaggacagcccagacgatgacaatagtcggt 101
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| |||||||||
Sbjct: 100 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgagcaatcacccag 41
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgatt 607
| |||||||| ||||||||||| || || ||||| ||||
Sbjct: 40 aaggcaaagaagagcttcccgaagagcggcccccaagatt 1
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 799 ccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcattt 858
||||||||||| ||||| ||||| |||||| || ||||||||||| |||||||| |||
Sbjct: 507 ccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgctcgttt 566
Query: 859 ctccaccaatcctcaa 874
||||||||||| ||||
Sbjct: 567 ctccaccaatcgtcaa 582
Score = 48.1 bits (24), Expect = 0.002
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 496 acgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtgg 555
||||| ||||| || | ||||||| | |||| |||||||| ||||| ||||| || ||
Sbjct: 207 acgatcgtcggggtcctgttctgccttcccaacagacccttgaggaacgggtacagatga 266
Query: 556 aggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgatt 607
| |||||||||| || ||||| ||||||||||| || || ||||||||||
Sbjct: 267 acaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgatt 318
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 799 ccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcattt 858
||||||||||| ||||| ||||| |||||| || ||||||||||| |||||||| |||
Sbjct: 389 ccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgctcgttt 330
Query: 859 ctccaccaatcctcaa 874
||||||||||| ||||
Sbjct: 329 ctccaccaatcgtcaa 314
Score = 42.1 bits (21), Expect = 0.10
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 559 atcacccagattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|||||||||| || ||||| ||||||||||| || || ||||||||||
Sbjct: 626 atcacccagaacgcgaagaagagcttcccgaagagaggcccccatgatt 578
>gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. vulgare cDNA clone HM02P11
5-PRIME, mRNA sequence
Length = 619
Score = 71.9 bits (36), Expect = 1e-010
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 2369 ttcttgcaaaagggaacccatttccttgcaaactctgcggtttcagatagagcttcaaaa 2428
||||||||||| ||||||||| |||||||||| || || ||||||| || | ||||||
Sbjct: 144 ttcttgcaaaatggaacccatctccttgcaaattccgcagtttcagcaagtgattcaaac 85
Query: 2429 gtcaacatagctgaaccgtcatcagaaacataacatgatactttgtcaacagggtaatcc 2488
|| | |||||| || || || ||||| || || || || | ||| |||||||| || |||
Sbjct: 84 gtgagcatagcagatccatcgtcagagacgtagcacgaaattttctcaacaggatagtcc 25
Query: 2489 acagcaagaatggacaggacagtg 2512
|| |||||||||||||| ||||||
Sbjct: 24 accgcaagaatggacagcacagtg 1
Score = 38.2 bits (19), Expect = 1.6
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 2243 ttgaactcttcatactccctcttcatagccc 2273
||||||||||| || || |||||||||||||
Sbjct: 270 ttgaactcttcgtaatctctcttcatagccc 240
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 799 ccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcattt 858
||||||||||| ||||| ||||| |||||| || ||||||||||| |||||||| |||
Sbjct: 414 ccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgctcgttt 355
Query: 859 ctccaccaatcctcaa 874
||||||||||| ||||
Sbjct: 354 ctccaccaatcgtcaa 339
Score = 42.1 bits (21), Expect = 0.10
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 559 atcacccagattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|||||||||| || ||||| ||||||||||| || || ||||||||||
Sbjct: 651 atcacccagaacgcgaagaagagcttcccgaagagaggcccccatgatt 603
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 799 ccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcattt 858
||||||||||| ||||| ||||| |||||| || ||||||||||| |||||||| |||
Sbjct: 281 ccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgctcgttt 222
Query: 859 ctccaccaatcctcaa 874
||||||||||| ||||
Sbjct: 221 ctccaccaatcgtcaa 206
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 630 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 571
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 570 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 511
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 510 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 470
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 799 ccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctcattt 858
||||||||||| ||||| ||||| |||||| || ||||||||||| |||||||| |||
Sbjct: 79 ccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgctcgttt 20
Query: 859 ctccaccaatcctcaa 874
||||||||||| ||||
Sbjct: 19 ctccaccaatcgtcaa 4
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 428 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 369
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 368 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 309
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 308 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 268
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 69.9 bits (35), Expect = 4e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 496 acgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtgg 555
|||||||| || || ||||||||| |||||||||| ||||| ||||| |||||||||||
Sbjct: 475 acgatggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtagaggtga 416
Query: 556 aggatcacccagattgcaaagaacagcttcccgaa 590
| ||| ||||||| | ||||| |||||||||||
Sbjct: 415 acgatgacccagaaggagaagaagagcttcccgaa 381
>gb|BE195554.3|BE195554 HVSMEh0089G13f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0089G13f, mRNA sequence
Length = 845
Score = 69.9 bits (35), Expect = 4e-010
Identities = 90/107 (84%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 2618 agtctatcgaggtaagtttcacggttgatagg-ataccactttgggaactgatctagaag 2676
|||||||| ||||| || || |||||||| || | ||||||| ||||||||||| || |
Sbjct: 339 agtctatcaaggtaggtctcccggttgattgggaaaccacttcgggaactgatccagtat 280
Query: 2677 ccaagacaaagcaaaccaaacttcacaaataacagatacaagccaca 2723
||| || ||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 279 ccaggataaagcaaaccaaatctcacatataacagataaaagccaca 233
>gb|BG417165.1|BG417165 HVSMEk0016J06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016J06f, mRNA sequence
Length = 475
Score = 63.9 bits (32), Expect = 3e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 796 agaccttggaacacagcaaagagatgtgcagaggtgccaccaatgacccaaaactgctca 855
|||||||| || |||||||| ||||||||||| | || || |||||||| ||||| |||
Sbjct: 451 agaccttgaaagacagcaaacagatgtgcagaaatacctccgatgacccagaactgttca 392
Query: 856 tttctccaccaatcctcaatgccaacac 883
|| |||||||| || || ||||||||||
Sbjct: 391 ttcctccaccactcgtcgatgccaacac 364
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||| ||||||||||| ||||| || | |||||| || |||||||| ||||| ||
Sbjct: 112 agaatttccactgaaccaagcgcccaccgaagcacttgattcagacgatctgaaaggttg 53
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 52 ataggggcagagcccttgaa 33
>gb|CV061189.1|CV061189 BNEL65h6 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL65h6 5' similar to putative cellulose
synthase, mRNA sequence
Length = 590
Score = 63.9 bits (32), Expect = 3e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1147 gaaccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaa 1206
|||||||||||||| || | ||||||||| |||||||| |||||||| || || |||||
Sbjct: 337 gaaccaagagcccaccggagcacttggttcagacgatctgaaagattgatgggggcagat 278
Query: 1207 cccttgaa 1214
||||||||
Sbjct: 277 cccttgaa 270
Score = 56.0 bits (28), Expect = 7e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1252 cctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccat 1311
|||||||| ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||
Sbjct: 232 cctcttgcgtgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaa 173
Query: 1312 ccgatctc 1319
|| |||||
Sbjct: 172 ccaatctc 165
>gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004K08f, mRNA sequence
Length = 882
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 478 aggacggaccaaacaatgacgatggtcggtgtgcggttctgcttccccatgagacccttc 537
||||||||||||| ||||||||||| || || ||||||||| ||||||||||||||
Sbjct: 432 aggacggaccaaagtatgacgatggtgggagtccggttctgccggcccatgagacccttg 491
Query: 538 aggaaagggta 548
||||| |||||
Sbjct: 492 aggaacgggta 502
>gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
3-PRIME, mRNA sequence
Length = 533
Score = 61.9 bits (31), Expect = 1e-007
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 399 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 458
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| ||| | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 459 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 518
Query: 568 attgcaaagaa 578
| ||||||||
Sbjct: 519 aaggcaaagaa 529
>gb|BQ661318.1|BQ661318 HM02P11u HM Hordeum vulgare subsp. vulgare cDNA clone HM02P11
3-PRIME, mRNA sequence
Length = 468
Score = 60.0 bits (30), Expect = 4e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 433 aaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaaaca 492
|||||||||||||| ||||| || || ||||| | || || || ||||||||||| |
Sbjct: 358 aaggggtcgatcttgacccagaggagggagaagaccgaggccagcaggacggaccagagt 417
Query: 493 atgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaa 542
||||||||||| || || ||||||||| |||||||||||||| |||||
Sbjct: 418 atgacgatggtgggagtccggttctgccggcccatgagacccttgaggaa 467
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 243 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 184
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 183 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 124
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 123 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 83
>gb|BF259426.2|BF259426 HVSMEf0019B07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0019B07f, mRNA sequence
Length = 755
Score = 58.0 bits (29), Expect = 2e-006
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 1736 gttcccacataaacaggtccttgaatgccatctagacccttcatattaatatcaaagaag 1795
||||| |||||| | || |||||| ||||||| || | | ||| ||||||||||| |||
Sbjct: 287 gttccgacataagctggcccttgagtgccatcnaggcacctcaagttaatatcaaaaaag 228
Query: 1796 acaatgttccggtttgcatatcgatcat 1823
||| |||||| ||| |||||||||||||
Sbjct: 227 acagtgttcctgttggcatatcgatcat 200
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2003 gcattcatggcaccagcctt 2022
||||||||||||||||||||
Sbjct: 20 gcattcatggcaccagcctt 1
Score = 36.2 bits (18), Expect = 6.2
Identities = 54/66 (81%)
Strand = Plus / Minus
Query: 1885 tggatccatcatgaaacacatagcctctctaagagctttgctgctattgaagtagtgatc 1944
||||||||| | ||| |||||||| || | | ||| |||||| | |||| |||||||||
Sbjct: 138 tggatccattaggaagcacatagcttcccggacagccttgctgttgttgatgtagtgatc 79
Query: 1945 acaatc 1950
||||||
Sbjct: 78 acaatc 73
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 384 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 325
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 324 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 265
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 264 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 224
Score = 36.2 bits (18), Expect = 6.2
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 799 ccttggaacacagcaaagagatgtgcagag 828
||||||||||| ||||| ||||| ||||||
Sbjct: 35 ccttggaacacggcaaatagatgggcagag 6
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 406 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 347
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 346 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 287
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 286 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 246
Score = 36.2 bits (18), Expect = 6.2
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 799 ccttggaacacagcaaagagatgtgcagag 828
||||||||||| ||||| ||||| ||||||
Sbjct: 57 ccttggaacacggcaaatagatgggcagag 28
>gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0006I08f,
mRNA sequence
Length = 898
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 2005 attcatggcaccagccttcttgtggtgctggaa 2037
||||||||||||||||||||||||| |||||||
Sbjct: 540 attcatggcaccagccttcttgtggggctggaa 508
Score = 50.1 bits (25), Expect = 4e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 2444 ccgtcatcagaaacataacatgatactttgtcaacagggtaatccacagcaagaatggac 2503
||||||||||| ||||| || || || ||||| || || |||||| |||||||||||||
Sbjct: 99 ccgtcatcagatacatagcaagagaccttgtccacgggataatccccagcaagaatggat 40
Query: 2504 aggacagtgttgccagt 2520
|| || |||||| ||||
Sbjct: 39 agcacggtgttggcagt 23
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 352 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 293
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 292 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 233
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 232 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 192
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 58.0 bits (29), Expect = 2e-006
Identities = 128/161 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 355 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 296
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 295 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 236
Query: 567 gattgcaaagaacagcttcccgaatagtggaccccatgatt 607
|| || ||||| ||||||||||| || || ||||||||||
Sbjct: 235 gaacgcgaagaagagcttcccgaagagaggcccccatgatt 195
>gb|BQ471177.1|BQ471177 HV01F24T HV Hordeum vulgare subsp. vulgare cDNA clone HV01F24
5-PRIME, mRNA sequence
Length = 625
Score = 58.0 bits (29), Expect = 2e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 2655 actttgggaactgatctagaagccaagacaaagcaaaccaaacttcacaaataacagata 2714
|||| ||||||||||| || | ||| || ||||||||||||| ||||| ||||||||||
Sbjct: 625 acttcgggaactgatccagtatccaggataaagcaaaccaaatctcacatataacagata 566
Query: 2715 caagccaca 2723
||||||||
Sbjct: 565 aaagccaca 557
>gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
3-PRIME, mRNA sequence
Length = 514
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 399 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 458
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggta 548
|||||||| ||| | ||||| |||||||| ||||| |||||
Sbjct: 459 gtgcggttttgcctgcccataagacccttgaggaaggggta 499
>gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. vulgare cDNA clone HV11G20
3-PRIME, mRNA sequence
Length = 469
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 363 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 422
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggta 548
|||||||| ||| | ||||| |||||||| ||||| |||||
Sbjct: 423 gtgcggttttgcctgcccataagacccttgaggaaggggta 463
>gb|BF253907.1|BF253907 HVSMEf0002H08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0002H08f, mRNA sequence
Length = 871
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1715 tgcctattgaaacagcatcctgttcccacataaacaggtccttgaatgccatctagaccc 1774
||||||| ||| || || || |||||||||||||| |||||||| |||||||| || |
Sbjct: 291 tgcctatagaagcatcaaccagttcccacataaaccggtccttggatgccatcaagcctt 232
Query: 1775 ttcatattaatatcaaagaa 1794
||||| |||| |||||||||
Sbjct: 231 ttcatgttaacatcaaagaa 212
>gb|BI958001.1|BI958001 HVSMEn0012N14f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0012N14f,
mRNA sequence
Length = 881
Score = 56.0 bits (28), Expect = 7e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtggtgctggaagcctggcctcttttcacgagaaacataa 2065
|||||||| || ||||||||||||||||||||||| || | ||| ||||| || || ||
Sbjct: 446 ttcatggcgccggccttcttgtggtgctggaagccggggcgcttctcacgggagacgtag 387
Query: 2066 acaagccgtggcaactcattcccatccgtgtcaagcccaccactgtggcccaagaatact 2125
|| || || |||| ||| || || || ||||| || || || |||||||||| ||| ||
Sbjct: 386 acgaggcgcggcagctcgttgccctcggtgtcgaggcctccgctgtggcccaggaagacc 327
Query: 2126 tggatcat 2133
||||||||
Sbjct: 326 tggatcat 319
Score = 40.1 bits (20), Expect = 0.40
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 2233 gatccgtactttgaactcttcatactccctcttcat 2268
|||||| || |||||||| || ||||||||||||||
Sbjct: 219 gatccgcaccttgaactcctcgtactccctcttcat 184
>gb|BF265178.2|BF265178 HV_CEa0011H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0011H21f, mRNA sequence
Length = 523
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 412 gccttctgggtaggggatatgaaggggtcgatcttcacccacagcagcgagaatatggaa 471
|||||||||||| ||| ||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 86 gccttctgggtatcggaaatgaaagggtcgatcttcacccagaggagggagaagatggag 27
Query: 472 gcaagaaggacggaccaaac 491
|| || |||| ||||||||
Sbjct: 26 gcgaggaggatcgaccaaac 7
>gb|BF255020.3|BF255020 HVSMEf0005K21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0005K21f, mRNA sequence
Length = 594
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
||||||||||| ||||||||||||| || | ||||||||| | ||||| ||||||||
Sbjct: 498 agaatttcaacggaaccaagagccccccggagcacttggttcaagcgatctgaaagattg 439
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 438 atgggggcagatcccttgaa 419
Score = 36.2 bits (18), Expect = 6.2
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 1463 gactggccaaagcgtttctccaagctcttctgagacat 1500
||||||||||| | |||||| |||||| | ||||||||
Sbjct: 181 gactggccaaatcttttctctaagctcatttgagacat 144
>gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF23J07
5-PRIME, mRNA sequence
Length = 480
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||| ||||||||||| ||||| || | |||||| || |||||||| ||||| ||
Sbjct: 338 agaatttccactgaaccaagcgcccaccgaagcacttgattcagacgatctgaaaggttg 279
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 278 ataggggcagagcccttgaa 259
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1257 tgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccatccgat 1316
||||||||||||||| ||||| | ||||||||| |||||||| || || ||||| || ||
Sbjct: 216 tgcatgcatcttgaacccagtaagaatatcttccgtaacagaaccgtagatccagccaat 157
Query: 1317 ctc 1319
|||
Sbjct: 156 ctc 154
>gb|BU995821.1|BU995821 HM11H13r HM Hordeum vulgare subsp. vulgare cDNA clone HM11H13
5-PRIME, mRNA sequence
Length = 591
Score = 56.0 bits (28), Expect = 7e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 1252 cctcttgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccat 1311
|||||||| ||||||||||| ||||| | ||||||||| || ||||| ||||| |||||
Sbjct: 491 cctcttgcgtgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaa 432
Query: 1312 ccgatctc 1319
|| |||||
Sbjct: 431 ccaatctc 424
>gb|CA009005.1|CA009005 HU12N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU12N24
5-PRIME, mRNA sequence
Length = 334
Score = 56.0 bits (28), Expect = 7e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 1135 agaatttcaactgaaccaagagcccagcgtaacacttggttgagacgatcagaaagatta 1194
|||||||| ||||||||||| ||||| || | |||||| || |||||||| ||||| ||
Sbjct: 321 agaatttccactgaaccaagcgcccaccgaagcacttgattcagacgatctgaaaggttg 262
Query: 1195 attggagcagaacccttgaa 1214
|| || ||||| ||||||||
Sbjct: 261 ataggggcagagcccttgaa 242
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1257 tgcatgcatcttgaaaccagttaaaatatcttcagtaacagagccatatatccatccgat 1316
||||||||||||||| ||||| | ||||||||| |||||||| || || ||||| || ||
Sbjct: 199 tgcatgcatcttgaacccagtaagaatatcttccgtaacagaaccgtagatccagccaat 140
Query: 1317 ctc 1319
|||
Sbjct: 139 ctc 137
>gb|BM442942.2|BM442942 EBro02_SQ001_P12_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_P12 5', mRNA sequence
Length = 351
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtggtgctggaagcc 2040
|||||||| || |||||||||||||||||||||||
Sbjct: 44 ttcatggcgccggccttcttgtggtgctggaagcc 10
>gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. vulgare cDNA clone HB04E22
5-PRIME, mRNA sequence
Length = 634
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 265 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 206
Query: 1814 tatcgatcatg 1824
|||||||||||
Sbjct: 205 tatcgatcatg 195
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 133 ggatccatcatgaaacacat 114
>gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. vulgare cDNA clone HM07A02
5-PRIME, mRNA sequence
Length = 619
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 604 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 545
Query: 1814 tatcgatcatg 1824
|||||||||||
Sbjct: 544 tatcgatcatg 534
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 472 ggatccatcatgaaacacat 453
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtg 2028
||||| |||||||||||||||||
Sbjct: 352 ttcatagcaccagccttcttgtg 330
>gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. vulgare cDNA clone HM13A10
5-PRIME, mRNA sequence
Length = 629
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 333 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 274
Query: 1814 tatcgatcatg 1824
|||||||||||
Sbjct: 273 tatcgatcatg 263
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 201 ggatccatcatgaaacacat 182
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtg 2028
||||| |||||||||||||||||
Sbjct: 81 ttcatagcaccagccttcttgtg 59
>gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K11
5-PRIME, mRNA sequence
Length = 586
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 233 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 174
Query: 1814 tatcgatcatg 1824
|||||||||||
Sbjct: 173 tatcgatcatg 163
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 101 ggatccatcatgaaacacat 82
>gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. vulgare cDNA clone HX10O05
5-PRIME, mRNA sequence
Length = 295
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 272 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 213
Query: 1814 tatcgatcatg 1824
|||||||||||
Sbjct: 212 tatcgatcatg 202
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 140 ggatccatcatgaaacacat 121
>gb|CA022476.1|CA022476 HZ43F10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43F10
5-PRIME, mRNA sequence
Length = 465
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 2627 aggtaagtttcacggttgataggataccactttgggaactgatctagaagccaagacaaa 2686
|||||||||||||| || | ||| ||||||| ||||||||||| | || ||| || |||
Sbjct: 456 aggtaagtttcacgattcactggagaccacttggggaactgatccaaaatccaggaaaaa 397
Query: 2687 gcaaaccaaa 2696
||||||||||
Sbjct: 396 gcaaaccaaa 387
>gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003I09f, mRNA sequence
Length = 854
Score = 50.1 bits (25), Expect = 4e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 2444 ccgtcatcagaaacataacatgatactttgtcaacagggtaatccacagcaagaatggac 2503
||||||||||| ||||| || || || ||||| || || ||||| ||||||||||||||
Sbjct: 139 ccgtcatcagatacatagcaagagaccttgtccacgggataatcaacagcaagaatggat 80
Query: 2504 aggacagtgttgccagt 2520
|| || |||||| ||||
Sbjct: 79 agcacggtgttggcagt 63
>gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007M11f, mRNA sequence
Length = 693
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 192 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 133
Query: 1814 tatcgatc 1821
||||||||
Sbjct: 132 tatcgatc 125
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 60 ggatccatcatgaaacacat 41
>gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd1a04 5', mRNA sequence
Length = 476
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 440 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 381
Query: 1814 tatcgatc 1821
||||||||
Sbjct: 380 tatcgatc 373
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 308 ggatccatcatgaaacacat 289
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtg 2028
||||| |||||||||||||||||
Sbjct: 188 ttcatagcaccagccttcttgtg 166
>gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 5', mRNA sequence
Length = 522
Score = 48.1 bits (24), Expect = 0.002
Identities = 114/144 (79%)
Strand = Plus / Minus
Query: 447 cacccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcgg 506
||||||||| ||||||| || ||||| | |||| |||||| || || ||||| |||||
Sbjct: 146 cacccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcgg 87
Query: 507 tgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcaccca 566
|| | ||||||| | |||| |||||||| ||||| ||||| || || | ||||||||
Sbjct: 86 ggtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcaccca 27
Query: 567 gattgcaaagaacagcttcccgaa 590
|| || ||||| |||||||||||
Sbjct: 26 gaacgcgaagaagagcttcccgaa 3
>gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30j03 5', mRNA sequence
Length = 364
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 115 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 56
Query: 1814 tatcgatc 1821
||||||||
Sbjct: 55 tatcgatc 48
>gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_E01 5', mRNA sequence
Length = 477
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1754 ccttgaatgccatctagacccttcatattaatatcaaagaagacaatgttccggtttgca 1813
|||||||| ||||| | ||| ||||| || |||||||||||||| | |||| ||| |||
Sbjct: 372 ccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggca 313
Query: 1814 tatcgatc 1821
||||||||
Sbjct: 312 tatcgatc 305
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 240 ggatccatcatgaaacacat 221
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtg 2028
||||| |||||||||||||||||
Sbjct: 120 ttcatagcaccagccttcttgtg 98
>gb|CA019265.1|CA019265 HV11G20r HV Hordeum vulgare subsp. vulgare cDNA clone HV11G20
5-PRIME, mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 2684 aaagcaaaccaaacttcacaaataacagatacaagccaca 2723
||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 565 aaagcaaaccaaatctcacatataacagataaaagccaca 526
>gb|BI959331.1|BI959331 HVSMEn0019E12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E12f, mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.025
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 433 aaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggaccaaaca 492
|||||||||||||| ||||| || || ||||| | || || | |||||||||||||
Sbjct: 405 aaggggtcgatcttgacccaaaggagggagaagaccgaggccatcaggacggaccaaagt 464
Query: 493 atgacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagagg 552
|||||||||| || || | ||||||| ||||||| |||||| ||||| ||||| |||
Sbjct: 465 ttgacgatggtgggagtcccgttctgccggcccatgacacccttgaggaacgggtacagg 524
Query: 553 tg 554
||
Sbjct: 525 tg 526
>gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05D18u 3', mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 502 gtcggtgtgcggttctgcttccccatgagacccttcaggaa 542
|||||||||||||| ||| | ||||| |||||||| |||||
Sbjct: 468 gtcggtgtgcggttttgcctgcccataagacccttgaggaa 508
>gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H13T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
||||||||||| || | || ||||| |||||||| |||||||| | || |||||||||
Sbjct: 532 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 473
Query: 1210 ttgaa 1214
|||||
Sbjct: 472 ttgaa 468
>gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd25p02, mRNA sequence
Length = 349
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
||||||||||| || | || ||||| |||||||| |||||||| | || |||||||||
Sbjct: 267 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 208
Query: 1210 ttgaa 1214
|||||
Sbjct: 207 ttgaa 203
>gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016K01f, mRNA sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
||||||||||| || | || ||||| |||||||| |||||||| | || |||||||||
Sbjct: 400 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 341
Query: 1210 ttgaa 1214
|||||
Sbjct: 340 ttgaa 336
>gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004F18f, mRNA sequence
Length = 888
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 832 ccaccaatgacccaaaactgctcatttctccaccaatcctc 872
||||| |||| ||| ||||||||||| |||||||| |||||
Sbjct: 338 ccaccgatgagccagaactgctcattcctccaccactcctc 298
>gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_F12 5', mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
||||||||||| || | || ||||| |||||||| |||||||| | || |||||||||
Sbjct: 346 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 287
Query: 1210 ttgaa 1214
|||||
Sbjct: 286 ttgaa 282
>gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_O01 5', mRNA sequence
Length = 401
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
||||||||||| || | || ||||| |||||||| |||||||| | || |||||||||
Sbjct: 130 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 71
Query: 1210 ttgaa 1214
|||||
Sbjct: 70 ttgaa 66
>gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50E24
5-PRIME, mRNA sequence
Length = 365
Score = 42.1 bits (21), Expect = 0.10
Identities = 174/225 (77%)
Strand = Plus / Minus
Query: 2340 actctggagccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaa 2399
|||||||||| | ||| ||||| ||| ||||| || || |||||||||||| ||||||
Sbjct: 239 actctggagcacgaggctcaatactgtacttcttacagaaaggaacccatttctttgcaa 180
Query: 2400 actctgcggtttcagatagagcttcaaaagtcaacatagctgaaccgtcatcagaaacat 2459
| || | |||||||| | |||| || |||| ||| || | ||| |||||||||||||
Sbjct: 179 attccgatgtttcagacaatccttcgaatgtcagcatggcagcaccatcatcagaaacat 120
Query: 2460 aacatgatactttgtcaacagggtaatccacagcaagaatggacaggacagtgttgccag 2519
| || || | |||||||| || ||||| ||||| || || || |||| |||||| | |
Sbjct: 119 agcaagagagcttgtcaaccggataatctacagccaggatagataggatagtgtttgctg 60
Query: 2520 taattagaggaggttccttaagtggatccactgtactaacaaaga 2564
| | ||| ||||| |||||| ||||| |||||||| |||||||
Sbjct: 59 tgactagcggaggctccttagcgggatcgactgtactgacaaaga 15
>gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D18
5-PRIME, mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1150 ccaagagcccagcgtaacacttggttgagacgatcagaaagattaattggagcagaaccc 1209
||||||||||| || | || ||||| |||||||| |||||||| | || |||||||||
Sbjct: 646 ccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaaccc 587
Query: 1210 ttgaa 1214
|||||
Sbjct: 586 ttgaa 582
>gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C19V 5', mRNA sequence
Length = 497
Score = 40.1 bits (20), Expect = 0.40
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1171 tggttgagacgatcagaaagattaattggagcagaacccttgaa 1214
||||| |||||||| |||||||| | || ||||||||||||||
Sbjct: 455 tggttaagacgatctgaaagattgagaggcgcagaacccttgaa 412
>gb|BF629280.2|BF629280 HVSMEb0010K01f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0010K01f, mRNA sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1603 ggaatcaatatagctcttgt 1622
||||||||||||||||||||
Sbjct: 156 ggaatcaatatagctcttgt 137
>gb|BG309038.1|BG309038 HVSMEc0001K13f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001K13f, mRNA sequence
Length = 821
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 349 atgttattcagcaggcagtt 368
||||||||||||||||||||
Sbjct: 27 atgttattcagcaggcagtt 8
>gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. vulgare cDNA clone HV11P23
5-PRIME, mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1886 ggatccatcatgaaacacat 1905
||||||||||||||||||||
Sbjct: 582 ggatccatcatgaaacacat 563
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtg 2028
||||| |||||||||||||||||
Sbjct: 462 ttcatagcaccagccttcttgtg 440
>gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013G05f, mRNA sequence
Length = 624
Score = 38.2 bits (19), Expect = 1.6
Identities = 136/175 (77%)
Strand = Plus / Minus
Query: 2340 actctggagccctaggttcaatgttgtgtttcttgcaaaagggaacccatttccttgcaa 2399
|||||||||| | ||| ||||| ||| ||||| || || |||||||||||| ||||||
Sbjct: 190 actctggagcacgaggctcaatactgtacttcttacagaaaggaacccatttctttgcaa 131
Query: 2400 actctgcggtttcagatagagcttcaaaagtcaacatagctgaaccgtcatcagaaacat 2459
| || | |||||||| | |||| || |||| ||| || | ||| |||||||||||||
Sbjct: 130 attcagatgtttcagacaatccttcgaatgtcagcatggcagcaccatcatcagaaacat 71
Query: 2460 aacatgatactttgtcaacagggtaatccacagcaagaatggacaggacagtgtt 2514
| || || | |||||||| || ||||| ||||| || || || |||| ||||||
Sbjct: 70 agcaagagagcttgtcaaccggataatctacagccaggatagataggatagtgtt 16
>gb|BI956576.1|BI956576 HVSMEn0004D17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004D17f, mRNA sequence
Length = 792
Score = 38.2 bits (19), Expect = 1.6
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 430 atgaaggggtcgatcttcacccacagcagcgagaatatggaagcaagaaggacggacca 488
||||||||||||||| | ||||||| || ||||| ||||| || || ||||| |||||
Sbjct: 263 atgaaggggtcgatcctgacccacacaagggagaagatggaggcgagcaggacagacca 321
>gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109A10_T3.ab1 similar to (AC009525) Very similar to
cellulose synthase catalytic subunit [Arabidopsis
thaliana], mRNA sequence
Length = 927
Score = 38.2 bits (19), Expect = 1.6
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 838 atgacccaaaactgctcatttctccaccaatcctc 872
|||| ||| ||||||||||| |||||||| |||||
Sbjct: 185 atgagccagaactgctcattcctccaccactcctc 151
>gb|BQ468196.1|BQ468196 HP01F17T HP Hordeum vulgare subsp. vulgare cDNA clone HP01F17
5-PRIME, mRNA sequence
Length = 519
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2243 ttgaactcttcatactccctctt 2265
|||||||| ||||||||||||||
Sbjct: 143 ttgaactcgtcatactccctctt 121
>gb|BF255897.2|BF255897 HVSMEf0008C05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0008C05f, mRNA sequence
Length = 865
Score = 36.2 bits (18), Expect = 6.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 2006 ttcatggcaccagccttcttgtggtg 2031
||||||||||| |||||||| |||||
Sbjct: 26 ttcatggcaccggccttcttctggtg 51
>gb|BG343258.1|BG343258 HVSMEg0005D23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005D23f, mRNA sequence
Length = 964
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2289 aagaaggttgtattttgt 2306
||||||||||||||||||
Sbjct: 884 aagaaggttgtattttgt 901
>gb|BF064987.2|BF064987 HV_CEb0022F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022F07f, mRNA sequence
Length = 813
Score = 36.2 bits (18), Expect = 6.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2011 ggcaccagccttcttgtggtgc 2032
|||||| |||||||||||||||
Sbjct: 548 ggcaccggccttcttgtggtgc 527
>gb|BF254086.3|BF254086 HVSMEf0002P20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0002P20f, mRNA sequence
Length = 807
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1179 acgatcagaaagattaat 1196
||||||||||||||||||
Sbjct: 559 acgatcagaaagattaat 542
>gb|AV930789.1|AV930789 AV930789 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd25e01 3', mRNA sequence
Length = 628
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2246 aactcttcatactccctc 2263
||||||||||||||||||
Sbjct: 11 aactcttcatactccctc 28
>gb|BJ463684.1|BJ463684 BJ463684 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30b03 5', mRNA sequence
Length = 627
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2396 gcaaactctgcggtttca 2413
||||||||||||||||||
Sbjct: 70 gcaaactctgcggtttca 53
>gb|BJ470984.1|BJ470984 BJ470984 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30b06 5', mRNA sequence
Length = 646
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2004 cattcatggcaccagcct 2021
||||||||||||||||||
Sbjct: 79 cattcatggcaccagcct 62
>gb|BJ471865.1|BJ471865 BJ471865 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal28c05 5', mRNA sequence
Length = 593
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2004 cattcatggcaccagcct 2021
||||||||||||||||||
Sbjct: 26 cattcatggcaccagcct 9
>gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_G08 5', mRNA sequence
Length = 463
Score = 36.2 bits (18), Expect = 6.2
Identities = 54/66 (81%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct: 66 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 7
Query: 508 gtgcgg 513
||||||
Sbjct: 6 gtgcgg 1
>gb|BU988332.1|BU988332 HF17F08r HF Hordeum vulgare subsp. vulgare cDNA clone HF17F08
5-PRIME, mRNA sequence
Length = 478
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1786 atcaaagaagacaatgtt 1803
||||||||||||||||||
Sbjct: 152 atcaaagaagacaatgtt 135
>gb|CA013594.1|CA013594 HT08P06r HT Hordeum vulgare subsp. vulgare cDNA clone HT08P06
5-PRIME, mRNA sequence
Length = 647
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2004 cattcatggcaccagcct 2021
||||||||||||||||||
Sbjct: 186 cattcatggcaccagcct 169
>gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. vulgare cDNA clone HV07A23
5-PRIME, mRNA sequence
Length = 569
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1888 atccatcatgaaacacat 1905
||||||||||||||||||
Sbjct: 569 atccatcatgaaacacat 552
>gb|CA023493.1|CA023493 HZ46G19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46G19
5-PRIME, mRNA sequence
Length = 353
Score = 36.2 bits (18), Expect = 6.2
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 2006 ttcatggcaccagccttcttgtggtg 2031
||||||||||| |||||||| |||||
Sbjct: 169 ttcatggcaccggccttcttctggtg 144
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 216,549
Number of Sequences: 312970
Number of extensions: 216549
Number of successful extensions: 55064
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54565
Number of HSP's gapped (non-prelim): 451
length of query: 2856
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2836
effective length of database: 168,875,139
effective search space: 478929894204
effective search space used: 478929894204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)