BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805022.2.2
(1462 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM816377.1|BM816377 HB105C09_SK.ab1 HB Hordeum vulgare s... 924 0.0
gb|BE602516.2|BE602516 HVSMEh0099H24f Hordeum vulgare 5-45 ... 793 0.0
gb|CA013292.1|CA013292 HT07P09r HT Hordeum vulgare subsp. v... 728 0.0
gb|CA013996.1|CA013996 HT10B07r HT Hordeum vulgare subsp. v... 728 0.0
gb|AV927052.1|AV927052 AV927052 K. Sato unpublished cDNA li... 712 0.0
gb|BQ470269.1|BQ470269 HX02G03r HX Hordeum vulgare subsp. v... 708 0.0
gb|BU974987.1|BU974987 HB29L24r BC Hordeum vulgare subsp. v... 708 0.0
gb|CA022673.1|CA022673 HZ44A10r HZ Hordeum vulgare subsp. v... 708 0.0
gb|BU984288.1|BU984288 HF03I06r HF Hordeum vulgare subsp. v... 704 0.0
gb|BJ463531.1|BJ463531 BJ463531 K. Sato unpublished cDNA li... 698 0.0
gb|BG343495.1|BG343495 HVSMEg0005O17f Hordeum vulgare pre-a... 692 0.0
gb|AL507682.1|AL507682 AL507682 Hordeum vulgare Barke devel... 686 0.0
gb|BU967320.1|BU967320 HB03O21r BC Hordeum vulgare subsp. v... 678 0.0
gb|BU972181.1|BU972181 HB20N21r BC Hordeum vulgare subsp. v... 668 0.0
gb|BU996055.1|BU996055 HM12E15r HM Hordeum vulgare subsp. v... 668 0.0
gb|BJ464524.1|BJ464524 BJ464524 K. Sato unpublished cDNA li... 660 0.0
gb|BU989923.1|BU989923 HF23D04r HF Hordeum vulgare subsp. v... 656 0.0
gb|BU987033.1|BU987033 HF13J22r HF Hordeum vulgare subsp. v... 650 0.0
gb|BU971507.1|BU971507 HB17N06r BC Hordeum vulgare subsp. v... 636 0.0
gb|BU989152.1|BU989152 HF19P06r HF Hordeum vulgare subsp. v... 636 0.0
gb|BU990425.1|BU990425 HF25A07r HF Hordeum vulgare subsp. v... 624 e-177
gb|CA019556.1|CA019556 HV12F21r HV Hordeum vulgare subsp. v... 618 e-175
gb|BU984261.1|BU984261 HF03H02r HF Hordeum vulgare subsp. v... 613 e-174
gb|BU989978.1|BU989978 HF23H16r HF Hordeum vulgare subsp. v... 613 e-174
gb|AV926058.1|AV926058 AV926058 K. Sato unpublished cDNA li... 609 e-172
gb|BJ550240.1|BJ550240 BJ550240 K. Sato unpublished cDNA li... 609 e-172
gb|AV924544.1|AV924544 AV924544 K. Sato unpublished cDNA li... 607 e-172
gb|AV925802.1|AV925802 AV925802 K. Sato unpublished cDNA li... 607 e-172
gb|BU990141.1|BU990141 HF24D09r HF Hordeum vulgare subsp. v... 605 e-171
gb|BU968849.1|BU968849 HB08M11r BC Hordeum vulgare subsp. v... 597 e-169
gb|AV929641.1|AV929641 AV929641 K. Sato unpublished cDNA li... 577 e-163
gb|CA012599.1|CA012599 HT05O05r HT Hordeum vulgare subsp. v... 569 e-161
gb|BU973182.1|BU973182 HB24A03r BC Hordeum vulgare subsp. v... 553 e-156
gb|CA021912.1|CA021912 HZ41I10r HZ Hordeum vulgare subsp. v... 551 e-155
gb|BM378027.2|BM378027 EBem04_SQ004_P03_R embryo, 12 DPA, n... 547 e-154
gb|BM816378.1|BM816378 HC114E04_SK.ab1 HC Hordeum vulgare s... 525 e-147
gb|BM816379.1|BM816379 HC114C12_SK.ab1 HC Hordeum vulgare s... 525 e-147
gb|AV931884.1|AV931884 AV931884 K. Sato unpublished cDNA li... 523 e-147
gb|BG416313.2|BG416313 HVSMEk0011E06f Hordeum vulgare testa... 519 e-146
gb|BU988804.1|BU988804 HF18M05r HF Hordeum vulgare subsp. v... 519 e-146
gb|AV928859.1|AV928859 AV928859 K. Sato unpublished cDNA li... 513 e-144
gb|AL509129.1|AL509129 AL509129 Hordeum vulgare Barke devel... 507 e-142
gb|BJ549457.1|BJ549457 BJ549457 K. Sato unpublished cDNA li... 505 e-141
gb|BJ466480.1|BJ466480 BJ466480 K. Sato unpublished cDNA li... 496 e-138
gb|BI949281.1|BI949281 HVSMEl0013C08f Hordeum vulgare spike... 484 e-135
gb|BJ466968.1|BJ466968 BJ466968 K. Sato unpublished cDNA li... 480 e-134
gb|CA000067.1|CA000067 HS16D15u HS Hordeum vulgare subsp. v... 470 e-131
gb|BQ469709.1|BQ469709 HZ01K03r HZ Hordeum vulgare subsp. v... 460 e-128
gb|BI950374.1|BI950374 HVSMEl0020G24f Hordeum vulgare spike... 454 e-126
gb|CB859475.1|CB859475 HI10J06w HI Hordeum vulgare subsp. v... 424 e-117
gb|BF621182.3|BF621182 HVSMEa0004N22f Hordeum vulgare seedl... 394 e-108
gb|BG365423.2|BG365423 HVSMEi0002J23f Hordeum vulgare 20 DA... 381 e-104
gb|BG300546.1|BG300546 HVSMEb0017H07f Hordeum vulgare seedl... 367 e-100
gb|BF256999.1|BF256999 HVSMEf0011J09f Hordeum vulgare seedl... 349 2e-094
gb|AV925801.1|AV925801 AV925801 K. Sato unpublished cDNA li... 323 9e-087
gb|BF264596.2|BF264596 HV_CEa0009N16f Hordeum vulgare seedl... 293 8e-078
gb|BQ665166.1|BQ665166 HX02G03u HX Hordeum vulgare subsp. v... 293 8e-078
gb|BQ665142.1|BQ665142 HX02E13u HX Hordeum vulgare subsp. v... 291 3e-077
gb|CA011377.1|CA011377 HT05O05u HT Hordeum vulgare subsp. v... 291 3e-077
gb|CA015712.1|CA015712 HV12F21u HV Hordeum vulgare subsp. v... 291 3e-077
gb|CA014932.1|CA014932 HT12M07r HT Hordeum vulgare subsp. v... 289 1e-076
gb|CA009783.1|CA009783 HT12M07u HT Hordeum vulgare subsp. v... 280 1e-073
gb|AL510728.1|AL510728 AL510728 Hordeum vulgare Barke devel... 272 3e-071
gb|BU974465.1|BU974465 HB28A07r BC Hordeum vulgare subsp. v... 268 5e-070
gb|BG300545.1|BG300545 HVSMEb0017H05f Hordeum vulgare seedl... 258 5e-067
gb|BQ470252.1|BQ470252 HX02E13r HX Hordeum vulgare subsp. v... 250 1e-064
gb|CA018112.1|CA018112 HV07H22r HV Hordeum vulgare subsp. v... 238 4e-061
gb|AL507463.1|AL507463 AL507463 Hordeum vulgare Barke devel... 236 2e-060
gb|BF261190.2|BF261190 HVSMEf0023P22f Hordeum vulgare seedl... 228 4e-058
gb|BE216762.2|BE216762 HV_CEb0011H19f Hordeum vulgare seedl... 228 4e-058
gb|BF262342.3|BF262342 HV_CEa0003L11f Hordeum vulgare seedl... 216 2e-054
gb|AV927053.1|AV927053 AV927053 K. Sato unpublished cDNA li... 216 2e-054
gb|AV913436.1|AV913436 AV913436 K. Sato unpublished cDNA li... 212 2e-053
gb|BU998286.1|BU998286 HI10J06r HI Hordeum vulgare subsp. v... 194 6e-048
gb|BF619981.2|BF619981 HVSMEc0009O12f Hordeum vulgare seedl... 168 3e-040
gb|BI946944.1|BI946944 HVSMEl0002P03f Hordeum vulgare spike... 153 2e-035
gb|BF263250.3|BF263250 HV_CEa0006E01f Hordeum vulgare seedl... 149 3e-034
gb|AV913516.1|AV913516 AV913516 K. Sato unpublished cDNA li... 149 3e-034
gb|BJ449503.1|BJ449503 BJ449503 K. Sato unpublished cDNA li... 143 2e-032
gb|BJ456941.1|BJ456941 BJ456941 K. Sato unpublished cDNA li... 143 2e-032
gb|AL510962.1|AL510962 AL510962 Hordeum vulgare Barke devel... 137 1e-030
gb|BU973687.1|BU973687 HB25L14r BC Hordeum vulgare subsp. v... 133 2e-029
gb|BE215300.1|BE215300 HV_CEb0006G18f Hordeum vulgare seedl... 131 7e-029
gb|BE454228.3|BE454228 HVSMEh0093F13f Hordeum vulgare 5-45 ... 129 3e-028
gb|AJ436235.1|AJ436235 AJ436235 S00002 Hordeum vulgare subs... 123 2e-026
gb|BI955425.1|BI955425 HVSMEm0023B13f Hordeum vulgare green... 107 1e-021
gb|AV918815.1|AV918815 AV918815 K. Sato unpublished cDNA li... 94 2e-017
>gb|BM816377.1|BM816377 HB105C09_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105C09_SK.ab1 similar to Benzaldehyde dehydrogenase
(NAD ), mRNA sequence
Length = 937
Score = 924 bits (466), Expect = 0.0
Identities = 776/879 (88%), Gaps = 1/879 (0%)
Strand = Plus / Plus
Query: 73 tgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttat 132
|||||| ||||||| ||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 31 tgaacgcccaaacc-tatgatgatggaggtctggaatcctcttggagttgttggtgtcat 89
Query: 133 aacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctg 192
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 90 cacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtctg 149
Query: 193 tggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatgac 252
|| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 150 cggcaactgtgttgtctggaagggtgctccaactactccattgatcactattgcaatgac 209
Query: 253 aaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatcttt 312
|||||||||||||||||||| |||||||||||||||||| | ||||| || ||| ||||
Sbjct: 210 taaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagcttt 269
Query: 313 ttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacctttggtttc 372
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 270 ttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggtttc 329
Query: 373 attcactggaagtacaagggctggtctaatggttcagcaacaagttagtgcaagatttgg 432
|||||| |||||||||| || ||||| ||||||||||||||| ||||| || ||||||||
Sbjct: 330 attcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcgagatttgg 389
Query: 433 taaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagatat 492
||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 390 taaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgatgcagacat 449
Query: 493 ccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcac 552
| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 450 tccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggcaacgatgcac 509
Query: 553 tacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttgatcagcttgt 612
|||||||||||||||| |||||||||| | |||||||||||| || |||||||| |||||
Sbjct: 510 tacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttgatcaacttgt 569
Query: 613 tgaggtatacaaacaagtccgaattggggatccgttggagaaaggcaccttactgggacc 672
|||||| || ||||||||||| ||||||||||| |||| || |||||||| ||||||||
Sbjct: 570 tgaggtttataaacaagtccgtattggggatcctatggaaaagggcaccttgctgggacc 629
Query: 673 actgcacactcctgcttcaaaagagaactttttgaaaggcattcagactatcaaatctca 732
|||||||||| |||| |||||||| | ||||||||||||||| || ||||||| ||| ||
Sbjct: 630 actgcacactactgcatcaaaagaaagctttttgaaaggcatccaaactatcagatccca 689
Query: 733 gggagggaaaatcctttttggaggatctgccattgaatcagaaggaaactttgtgcaacc 792
||||| ||||||||| | |||||||| | |||||||||||||| |||| ||| |||||
Sbjct: 690 nggaggaaaaatccttctangaggatcttctattgaatcagaagggaactntgttcaacc 749
Query: 793 aacaattgtggaaattacaccttctgcaccagttgtgaaagaagaactctttggtcctgt 852
|||||||||||||| | ||||| ||| |||||||||| |||||| | || |||||||
Sbjct: 750 aacaattgtggaaaattcacctgatgcgccagttgtgagggaagaaattgtttgtcctgt 809
Query: 853 cctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttcc 912
|||||||| ||||||||||||||| |||||| ||||||||||||||| || ||||||||
Sbjct: 810 cctttatgccatgaaatttcagaccctgaagggagcaattgaaatcaacaattctgttcc 869
Query: 913 tcaaggattgagcagttctatatttacaaagaggccaga 951
||||||||||||||||||||||||||||| || ||||||
Sbjct: 870 tcaaggattgagcagttctatatttacaaggaagccaga 908
>gb|BE602516.2|BE602516 HVSMEh0099H24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0099H24f, mRNA sequence
Length = 731
Score = 793 bits (400), Expect = 0.0
Identities = 649/728 (89%), Gaps = 3/728 (0%)
Strand = Plus / Plus
Query: 403 ggttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaa 462
|||||||||||| ||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct: 6 ggttcagcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaa 65
Query: 463 tgccatcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgc 522
|||||| ||||| |||||||||||||| || | ||||||||||| ||||| ||||| ||
Sbjct: 66 tgccattattgtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgc 125
Query: 523 tgctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaa 582
||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| |
Sbjct: 126 tgctgttggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaag 185
Query: 583 catatatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccgaattgggga 642
|||||||||||| || |||||||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 186 catatatcaaacatttcttgatcaacttgttgaggtttataaacaagtccgtattgggga 245
Query: 643 tccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactt 702
||| |||| || |||||||| |||||||||||||||||| |||| |||||||| | |||
Sbjct: 246 tcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctt 305
Query: 703 tttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggatctgc 762
|||||||||||| || ||||||| ||| |||||||| ||||||||| | ||||||||| |
Sbjct: 306 tttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctaggaggatcttc 365
Query: 763 cattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcacc 822
|||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct: 366 tattgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgcc 425
Query: 823 agttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaa 882
|||||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 426 agttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaa 485
Query: 883 ggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaa 942
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaag 545
Query: 943 gaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaa 1002
|| ||||||| || |||| ||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 546 gaagccagatgcta-ttttcagtggattgggcctcatggtagtgattgtggtatagtgaa 604
Query: 1003 tgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaac 1062
||| || ||||| |||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct: 605 tgtaaatatacccactaatggtgctgaaatt-gtggagcttttggt-gagaaaaagcaac 662
Query: 1063 tggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttg 1122
||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 663 cggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttg 722
Query: 1123 tacaatca 1130
||||||||
Sbjct: 723 tacaatca 730
>gb|CA013292.1|CA013292 HT07P09r HT Hordeum vulgare subsp. vulgare cDNA clone HT07P09
5-PRIME, mRNA sequence
Length = 616
Score = 728 bits (367), Expect = 0.0
Identities = 553/615 (89%)
Strand = Plus / Plus
Query: 19 gtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatctgaacg 78
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 1 gtgtgattatgctgtggggctaagtcgtcagctaaatggatccatcataccatctgaacg 60
Query: 79 accaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttataacggc 138
||||||||||||||||||||||| |||||||| ||||||||||| ||||| || || ||
Sbjct: 61 cccaaaccatatgatgatggaggtctggaatcctcttggagttgttggtgtcatcacagc 120
Query: 139 atttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgtggaaa 198
||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 121 attcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtctgcggcaa 180
Query: 199 ttgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatgacaaaaat 258
||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct: 181 ctgtgttgtctggaagggtgctccaactactccattgatcactattgcaatgactaaaat 240
Query: 259 agtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatctttttgtgg 318
||||||||||||||| |||||||||||||||||| | ||||| || ||| ||||||||||
Sbjct: 241 agtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagctttttgtgg 300
Query: 319 gggcactgaaattggtcaagcaattgcccttgacattaggatacctttggtttcattcac 378
||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 301 gggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggtttcattcac 360
Query: 379 tggaagtacaagggctggtctaatggttcagcaacaagttagtgcaagatttggtaaatg 438
|||||||||| || ||||| ||||||||||||||| ||||| || ||||||||||||||
Sbjct: 361 aggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcgagatttggtaaatg 420
Query: 439 ccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagatatccagct 498
||||||||||||||| || ||||||||||| ||||| |||||||||||||| || | ||
Sbjct: 421 ccttcttgaacttagtgggaacaatgccattattgtcatggatgatgcagacattccact 480
Query: 499 agctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcactacatg 558
||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct: 481 agctgtgcgttctgttttgtttgctgctgttggcacagcagggcaacgatgcactacatg 540
Query: 559 tcgtaggctgattcttcatgagaacatatatcaaaccttccttgatcagcttgttgaggt 618
|||||||||| |||||||||| | |||||||||||| || |||||||| |||||||||||
Sbjct: 541 tcgtaggctgcttcttcatgaaagcatatatcaaacatttcttgatcaacttgttgaggt 600
Query: 619 atacaaacaagtccg 633
|| |||||||||||
Sbjct: 601 ttataaacaagtccg 615
>gb|CA013996.1|CA013996 HT10B07r HT Hordeum vulgare subsp. vulgare cDNA clone HT10B07
5-PRIME, mRNA sequence
Length = 628
Score = 728 bits (367), Expect = 0.0
Identities = 553/615 (89%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 13 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 72
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 73 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 132
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 133 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 192
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 193 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 252
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 253 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 312
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 313 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 372
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgc 423
||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||| ||
Sbjct: 373 tttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgc 432
Query: 424 aagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatga 483
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 433 gagatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatga 492
Query: 484 tgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggaca 543
|||||| || | ||||||||||| ||||| ||||| ||||||||||| |||||||| ||
Sbjct: 493 tgcagacattccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggca 552
Query: 544 acgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttga 603
||| ||||||||||||||||||||| |||||||||| | |||||||||||| || |||||
Sbjct: 553 acgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttga 612
Query: 604 tcagcttgttgaggt 618
||| |||||||||||
Sbjct: 613 tcaacttgttgaggt 627
>gb|AV927052.1|AV927052 AV927052 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26i21 5', mRNA sequence
Length = 607
Score = 712 bits (359), Expect = 0.0
Identities = 542/603 (89%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 62
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 63 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 122
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 123 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 182
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 183 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 242
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 243 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 302
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 303 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 362
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgc 423
||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||| ||
Sbjct: 363 tttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgc 422
Query: 424 aagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatga 483
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 423 gagatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatga 482
Query: 484 tgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggaca 543
|||||| || | ||||||||||| ||||| ||||| ||||||||||| |||||||| ||
Sbjct: 483 tgcagacattccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggca 542
Query: 544 acgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttga 603
||| ||||||||||||||||||||| |||||||||| | |||||||||||| || |||||
Sbjct: 543 acgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttga 602
Query: 604 tca 606
|||
Sbjct: 603 tca 605
>gb|BQ470269.1|BQ470269 HX02G03r HX Hordeum vulgare subsp. vulgare cDNA clone HX02G03
5-PRIME, mRNA sequence
Length = 620
Score = 708 bits (357), Expect = 0.0
Identities = 540/601 (89%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 20 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 79
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 80 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 139
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 140 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 199
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 200 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 259
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 260 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 319
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 320 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 379
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgc 423
||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||| ||
Sbjct: 380 tttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgc 439
Query: 424 aagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatga 483
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 440 gagatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatga 499
Query: 484 tgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggaca 543
|||||| || | ||||||||||| ||||| ||||| ||||||||||| |||||||| ||
Sbjct: 500 tgcagacattccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggca 559
Query: 544 acgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttga 603
||| ||||||||||||||||||||| |||||||||| | |||||||||||| || |||||
Sbjct: 560 acgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttga 619
Query: 604 t 604
|
Sbjct: 620 t 620
>gb|BU974987.1|BU974987 HB29L24r BC Hordeum vulgare subsp. vulgare cDNA clone HB29L24
5-PRIME, mRNA sequence
Length = 624
Score = 708 bits (357), Expect = 0.0
Identities = 550/613 (89%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 533 acagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaa 592
|||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 13 acagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaa 72
Query: 593 accttccttgatcagcttgttgaggtatacaaacaagtccgaattggggatccgttggag 652
|| || |||||||| ||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 73 acatttcttgatcaacttgttgaggt-tataaacaagtccgtattggggatcctatggaa 131
Query: 653 aaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactttttgaaaggc 712
|| |||||||| |||||||||||||||||| |||| |||||||| | |||||||||||||
Sbjct: 132 aagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctttttgaaaggc 191
Query: 713 attcagactatcaaatctcagggagggaaaatcctttttggaggatctgccattgaatca 772
|| || ||||||| ||| |||||||| ||||||||| | ||||||||| | |||||||||
Sbjct: 192 atccaaactatcagatcccagggaggaaaaatccttctaggaggatcttctattgaatca 251
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 252 gaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgccagttgtgagg 311
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
|||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 312 gaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaaggaagcaatt 371
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
|||||||| || ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 372 gaaatcaacaattctgttcctcaaggattgagcagttctatatttacaaggaagccagat 431
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
|||||| |||||| | ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 432 gctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaatgtaaatata 491
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 492 cccactaatggtgctgaaattggtggagcttttggtggagaaaaagcaaccggtggcgga 551
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaac 1132
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 552 cgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttgtacaatcaac 611
Query: 1133 tatgggagcgagc 1145
|| || |||||||
Sbjct: 612 tacggaagcgagc 624
>gb|CA022673.1|CA022673 HZ44A10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44A10
5-PRIME, mRNA sequence
Length = 634
Score = 708 bits (357), Expect = 0.0
Identities = 540/601 (89%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 34 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 93
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 94 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 153
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 154 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 213
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 214 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 273
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 274 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 333
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 334 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 393
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgc 423
||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||| ||
Sbjct: 394 tttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgc 453
Query: 424 aagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatga 483
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 454 gagatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatga 513
Query: 484 tgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggaca 543
|||||| || | ||||||||||| ||||| ||||| ||||||||||| |||||||| ||
Sbjct: 514 tgcagacattccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggca 573
Query: 544 acgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttga 603
||| ||||||||||||||||||||| |||||||||| | |||||||||||| || |||||
Sbjct: 574 acgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttga 633
Query: 604 t 604
|
Sbjct: 634 t 634
>gb|BU984288.1|BU984288 HF03I06r HF Hordeum vulgare subsp. vulgare cDNA clone HF03I06
5-PRIME, mRNA sequence
Length = 597
Score = 704 bits (355), Expect = 0.0
Identities = 532/591 (90%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 7 gacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccatcataccatct 66
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 67 gaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgttggtgtcatc 126
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 127 acagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtctgc 186
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatgaca 253
|| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 187 ggcaactgtgttgtctggaagggtgctccaactactccattgatcactattgcaatgact 246
Query: 254 aaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatctttt 313
|||||||||||||||||||| |||||||||||||||||| | ||||| || ||| |||||
Sbjct: 247 aaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagctttt 306
Query: 314 tgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacctttggtttca 373
|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 307 tgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggtttca 366
Query: 374 ttcactggaagtacaagggctggtctaatggttcagcaacaagttagtgcaagatttggt 433
||||| |||||||||| || ||||| ||||||||||||||| ||||| || |||||||||
Sbjct: 367 ttcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcgagatttggt 426
Query: 434 aaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagatatc 493
|||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 427 aaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgatgcagacatt 486
Query: 494 cagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcact 553
| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||||
Sbjct: 487 ccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggcaacgatgcact 546
Query: 554 acatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttgat 604
||||||||||||||| |||||||||| | |||||||||||| || ||||||
Sbjct: 547 acatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttgat 597
>gb|BJ463531.1|BJ463531 BJ463531 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32f22 5', mRNA sequence
Length = 667
Score = 698 bits (352), Expect = 0.0
Identities = 566/636 (88%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 88 tatgatgatggaggtgtggaatccccttggagttgtgggtgttataacggcatttaattt 147
||||||||||||||| |||||||| ||||||||||| ||||| || || ||||| |||||
Sbjct: 33 tatgatgatggaggtctggaatcctcttggagttgttggtgt-atcacagcattcaattt 91
Query: 148 cccttgtgctgtgcttggttggaatgcttgcattgctttggtctgtggaaattgtgtcgt 207
|||||| || ||||| ||||||||||||||||||||||||||||| || || ||||| ||
Sbjct: 92 cccttgcgccgtgctgggttggaatgcttgcattgctttggtctgcggcaactgtgttgt 151
Query: 208 ctggaaaggtgctccaacaactccactgatcactattgcaatgacaaaaatagtggctag 267
|||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 152 ctggaagggtgctccaactactccattgatcactattgcaatgactaaaatagtggctag 211
Query: 268 tgtattggagaagaacaacttgccaggcgcaatttttacatctttttgtgggggcactga 327
|||||| |||||||||||||||||| | ||||| || ||| ||||||||||||| ||||
Sbjct: 212 tgtatttgagaagaacaacttgccaagtgcaatcttcacagctttttgtgggggtgctga 271
Query: 328 aattggtcaagcaattgcccttgacattaggatacctttggtttcattcactggaagtac 387
|||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 272 aattggtcaagcaattgctcttgacacaaggatacctttggtttcattcacaggaagtac 331
Query: 388 aagggctggtctaatggttcagcaacaagttagtgcaagatttggtaaatgccttcttga 447
|| || ||||| ||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 332 aaaggttggtcaaatggttcagcaacaggttagcgcgagatttggtaaatgccttcttga 391
Query: 448 acttagcggaaacaatgccatcattgttatggatgatgcagatatccagctagctgtgcg 507
|||||| || ||||||||||| ||||| |||||||||||||| || | |||||||||||
Sbjct: 392 acttagtgggaacaatgccattattgtcatggatgatgcagacattccactagctgtgcg 451
Query: 508 atctgtcttgttcgctgctgttggtacagcaggacaacgctgcactacatgtcgtaggct 567
||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 452 ttctgttttgtttgctgctgttggcacagcagggcaacgatgcactacatgtcgtaggct 511
Query: 568 gattcttcatgagaacatatatcaaaccttccttgatcagcttgttgaggtatacaaaca 627
| |||||||||| | |||||||||||| || |||||||| ||||||||||| || |||||
Sbjct: 512 gcttcttcatgaaagcatatatcaaacatttcttgatcaacttgttgaggtttataaaca 571
Query: 628 agtccgaattggggatccgttggagaaaggcaccttactgggaccactgcacactcctgc 687
|||||| ||||||||||| |||| || |||||||| |||||||||||||||||| ||||
Sbjct: 572 agtccgtattggggatcctatggaaaagggcaccttgctgggaccactgcacactactgc 631
Query: 688 ttcaaaagagaactttttgaaaggcattcagactat 723
|||||||| | ||||||||||||||| || |||||
Sbjct: 632 atcaaaagaaagctttttgaaaggcatccaaactat 667
>gb|BG343495.1|BG343495 HVSMEg0005O17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005O17f, mRNA sequence
Length = 958
Score = 692 bits (349), Expect = 0.0
Identities = 674/777 (86%), Gaps = 4/777 (0%)
Strand = Plus / Plus
Query: 280 gaacaacttgccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagc 339
||||||||||||| | ||||| || ||| ||||||||||||| ||||||||||||||||
Sbjct: 1 gaacaacttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagc 60
Query: 340 aattgcccttgacattaggatacctttggtttcattcactggaagtacaagggctggtct 399
|||||| ||||||| ||||||||||||||||||||||| |||||||||| || |||||
Sbjct: 61 aattgctcttgacacaaggatacctttggtttcattcacaggaagtacaaaggttggtca 120
Query: 400 aatggttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaa 459
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 121 aatggttcagcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaa 180
Query: 460 caatgccatcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgtt 519
||||||||| ||||| |||||||||||||| || | ||||||||||| ||||| |||||
Sbjct: 181 caatgccattattgtcatggatgatgcagacattccactagctgtgcgttctgttttgtt 240
Query: 520 cgctgctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatga 579
||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 241 tgctgctgttggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcatga 300
Query: 580 gaacatatatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccgaattgg 639
| |||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 301 aagcatatatcaaacatttcttgatcaacttgttgaggtttataaacaagtccgtattgg 360
Query: 640 ggatccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaa 699
|||||| |||| || |||||||| |||||||||||||||||| |||| |||||||| |
Sbjct: 361 ggatcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaagaaag 420
Query: 700 ctttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggatc 759
||||||||||||||| || ||||||| ||| |||||||| ||||||||| | ||||||||
Sbjct: 421 ctttttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctaggaggatc 480
Query: 760 tgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgc 819
| | |||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||
Sbjct: 481 ttctattgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgc 540
Query: 820 accagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagacctt 879
|||||||||| |||||| | ||||||||||||||||||| ||||||||||||||| |
Sbjct: 541 gccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccct 600
Query: 880 gaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttac 939
| | | ||||||||||||||| | | || | ||||||||||||||||||||||||||||
Sbjct: 601 ggaag-agcaattgaaatcaa-cattttggtgctcaaggattgagcagttctatatttac 658
Query: 940 aaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagt 999
|| || ||||||| |||||| ||||| | ||||| |||||||||| |||| |||||
Sbjct: 659 aaggaagccagatgctattttcaagtgaattgggcctaatggtagtgaaggtggaatagt 718
Query: 1000 gaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaa 1056
||||| ||| ||| ||||||| |||||||||||| |||| || |||||||||||
Sbjct: 719 gaatg-gaaattacacactaatgtggctgaaattggt-gagctttgggtggagaaaa 773
>gb|AL507682.1|AL507682 AL507682 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06I22V 5',
mRNA sequence
Length = 700
Score = 686 bits (346), Expect = 0.0
Identities = 588/664 (88%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 56 ggatccattataccatctgaacgaccaaaccatatgatgatggaggtgtggaatcccctt 115
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 11 ggatccatcataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctctt 70
Query: 116 ggagttgtgggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgct 175
|||||||| ||||| || || ||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 71 ggagttgttggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgct 130
Query: 176 tgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactg 235
||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||| ||
Sbjct: 131 tgcattgctttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattg 190
Query: 236 atcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggc 295
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct: 191 atcactattgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagt 250
Query: 296 gcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacatt 355
||||| || ||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 251 gcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacaca 310
Query: 356 aggatacctttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaa 415
||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||
Sbjct: 311 aggatacctttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacag 370
Query: 416 gttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgtt 475
||||| || |||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 371 gttagcgcgagatttggtaaatgccttcttgaacttantgggaacaatgccattattgtc 430
Query: 476 atggatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtaca 535
|||||||||||||| || | ||||||||||| ||||| ||| | ||||||||||| |||
Sbjct: 431 atggatgatgcagacattccactagctgtgcgttctgttttgnttgctgctgttggcaca 490
Query: 536 gcaggacaa-cgctgcactacatgt-cgtaggctgattcttcatgagaacatatatcaaa 593
||||| ||| || |||||||||||| ||||||||| |||||||||| | |||||||||||
Sbjct: 491 gcagggcaaccgatgcactacatgtccgtaggctgcttcttcatgaaagcatatatcaaa 550
Query: 594 ccttccttgatcagcttgtt-gaggtatacaaacaagtccgaattggggatccgttggag 652
| || |||||||| |||||| ||||| || ||||||||||| ||||||||||| ||||
Sbjct: 551 catttcttgatcaacttgttggaggtttataaacaagtccgtattggggatcctatggaa 610
Query: 653 aaaggcacc-ttactgggaccactgcacactcctgcttcaaaagagaactttttgaaagg 711
|| |||||| || |||||||||||||||||| |||| |||||||| | ||||||||||||
Sbjct: 611 aagggcacctttgctgggaccactgcacactactgcatcaaaagaaagctttttgaaagg 670
Query: 712 catt 715
||||
Sbjct: 671 catt 674
>gb|BU967320.1|BU967320 HB03O21r BC Hordeum vulgare subsp. vulgare cDNA clone HB03O21
5-PRIME, mRNA sequence
Length = 635
Score = 678 bits (342), Expect = 0.0
Identities = 553/622 (88%), Gaps = 1/622 (0%)
Strand = Plus / Plus
Query: 164 ggttggaatgcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctcca 223
||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||||
Sbjct: 14 ggttggaatgcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctcca 73
Query: 224 acaactccactgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaac 283
|| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 74 actactccattgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaac 133
Query: 284 aacttgccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaatt 343
||||||||| | ||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct: 134 aacttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaatt 193
Query: 344 gcccttgacattaggatacctttggtttcattcactggaagtacaagggctggtctaatg 403
|| ||||||| ||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct: 194 gctcttgacacaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatg 253
Query: 404 gttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaat 463
||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct: 254 gttcagcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaat 313
Query: 464 gccatcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgct 523
||||| ||||| |||||||||||||| || | ||||||||||| ||||| ||||| |||
Sbjct: 314 gccattattgtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgct 373
Query: 524 gctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaac 583
|||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| | |
Sbjct: 374 gctgttggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagc 433
Query: 584 atatatcaaaccttccttgatcagct-tgttgaggtatacaaacaagtccgaattgggga 642
||||||||||| || |||||||| || ||||||||| || ||||||||||| ||||||||
Sbjct: 434 atatatcaaacatttcttgatcaactgtgttgaggtttataaacaagtccgtattgggga 493
Query: 643 tccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactt 702
||| |||| || |||||||| |||||||||||||||||| |||| |||||||| | |||
Sbjct: 494 tcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctt 553
Query: 703 tttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggatctgc 762
|||||||||||| || ||||||| ||| |||||||| ||||||||| | ||||||||| |
Sbjct: 554 tttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctaggaggatcttc 613
Query: 763 cattgaatcagaaggaaacttt 784
|||||||||||||| ||||||
Sbjct: 614 tattgaatcagaagggaacttt 635
>gb|BU972181.1|BU972181 HB20N21r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N21
5-PRIME, mRNA sequence
Length = 591
Score = 668 bits (337), Expect = 0.0
Identities = 521/581 (89%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 533 acagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaa 592
|||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 12 acagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaa 71
Query: 593 accttccttgatcagcttgttgaggtatacaaacaagtccgaattggggatccgttggag 652
|| || |||||||| ||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 72 acatttcttgatcaacttgttgaggt-tataaacaagtccgtattggggatcctatggaa 130
Query: 653 aaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactttttgaaaggc 712
|| |||||||| |||||||||||||||||| |||| |||||||| | |||||||||||||
Sbjct: 131 aagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctttttgaaaggc 190
Query: 713 attcagactatcaaatctcagggagggaaaatcctttttggaggatctgccattgaatca 772
|| || ||||||| ||| |||||||| ||||||||| | ||||||||| | |||||||||
Sbjct: 191 atccaaactatcagatcccagggaggaaaaatccttctaggaggatcttctattgaatca 250
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 251 gaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgccagttgtgagg 310
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
|||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 311 gaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaaggaagcaatt 370
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
|||||||| || ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 371 gaaatcaacaattctgttcctcaaggattgagcagttctatatttacaaggaagccagat 430
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
|||||| |||||| | ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 431 gctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaatgtaaatata 490
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 491 cccactaatggtgctgaaattggtggagcttttggtggagaaaaagcaaccggtggcgga 550
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggag 1113
||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 551 cgagaagcaggaagtgattcctggaagcaatacatgaggag 591
>gb|BU996055.1|BU996055 HM12E15r HM Hordeum vulgare subsp. vulgare cDNA clone HM12E15
5-PRIME, mRNA sequence
Length = 604
Score = 668 bits (337), Expect = 0.0
Identities = 530/593 (89%), Gaps = 1/593 (0%)
Strand = Plus / Plus
Query: 515 ttgttcgctgctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattctt 574
||||| ||||||||||| |||| ||| ||||| ||||||||||||||||||||| |||||
Sbjct: 13 ttgtttgctgctgttggcacag-agggcaacgatgcactacatgtcgtaggctgcttctt 71
Query: 575 catgagaacatatatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccga 634
||||| | |||||||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 72 catgaaagcatatatcaaacatttcttgatcaacttgttgaggtttataaacaagtccgt 131
Query: 635 attggggatccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaa 694
||||||||||| |||| || |||||||| |||||||||||||||||| |||| ||||||
Sbjct: 132 attggggatcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaa 191
Query: 695 gagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttgga 754
|| | ||||||||||||||| || ||||||| ||| |||||||| ||||||||| | |||
Sbjct: 192 gaaagctttttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctagga 251
Query: 755 ggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacacct 814
|||||| | |||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct: 252 ggatcttctattgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacct 311
Query: 815 tctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcag 874
||| |||||||||| |||||| | ||||||||||||||||||| ||||||||||||
Sbjct: 312 gatgcgccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcag 371
Query: 875 accttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctata 934
||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 372 accctgaaggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctata 431
Query: 935 tttacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggt 994
||||||| || ||||||| |||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 432 tttacaaggaagccagatgctattttcaagtggattgggcctcatggtagtgattgtggt 491
Query: 995 atagtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaa 1054
||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 492 atagtgaatgtaaatatacccactaatggtgctgaaattggtggagcttttggtggagaa 551
Query: 1055 aaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacat 1107
|||||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 552 aaagcaaccggtggcggacgagaagcaggaagtgattcctggaagcaatacat 604
>gb|BJ464524.1|BJ464524 BJ464524 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34l24 5', mRNA sequence
Length = 572
Score = 660 bits (333), Expect = 0.0
Identities = 510/569 (89%)
Strand = Plus / Plus
Query: 38 ctaagtcgccaactaaatggatccattataccatctgaacgaccaaaccatatgatgatg 97
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 1 ctaagtcgtcagctaaatggatccatcataccatctgaacgcccaaaccatatgatgatg 60
Query: 98 gaggtgtggaatccccttggagttgtgggtgttataacggcatttaatttcccttgtgct 157
||||| |||||||| ||||||||||| ||||| || || ||||| ||||||||||| ||
Sbjct: 61 gaggtctggaatcctcttggagttgttggtgtcatcacagcattcaatttcccttgcgcc 120
Query: 158 gtgcttggttggaatgcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggt 217
||||| ||||||||||||||||||||||||||||| || || ||||| |||||||| |||
Sbjct: 121 gtgctgggttggaatgcttgcattgctttggtctgcggcaactgtgttgtctggaagggt 180
Query: 218 gctccaacaactccactgatcactattgcaatgacaaaaatagtggctagtgtattggag 277
|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 181 gctccaactactccattgatcactattgcaatgactaaaatagtggctagtgtatttgag 240
Query: 278 aagaacaacttgccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaa 337
||||||||||||||| | ||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 241 aagaacaacttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaa 300
Query: 338 gcaattgcccttgacattaggatacctttggtttcattcactggaagtacaagggctggt 397
|||||||| ||||||| ||||||||||||||||||||||| |||||||||| || ||||
Sbjct: 301 gcaattgctcttgacacaaggatacctttggtttcattcacaggaagtacaaaggttggt 360
Query: 398 ctaatggttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcgga 457
| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 361 caaatggttcagcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtggg 420
Query: 458 aacaatgccatcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttg 517
||||||||||| ||||| |||||||||||||| || | ||||||||||| ||||| |||
Sbjct: 421 aacaatgccattattgtcatggatgatgcagacattccactagctgtgcgttctgttttg 480
Query: 518 ttcgctgctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcat 577
|| ||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 481 tttgctgctgttggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcat 540
Query: 578 gagaacatatatcaaaccttccttgatca 606
|| | |||||||||||| || ||||||||
Sbjct: 541 gaaagcatatatcaaacatttcttgatca 569
>gb|BU989923.1|BU989923 HF23D04r HF Hordeum vulgare subsp. vulgare cDNA clone HF23D04
5-PRIME, mRNA sequence
Length = 591
Score = 656 bits (331), Expect = 0.0
Identities = 526/591 (89%)
Strand = Plus / Plus
Query: 169 gaatgcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaac 228
|||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| ||
Sbjct: 1 gaatgcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctccaactac 60
Query: 229 tccactgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaactt 288
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 61 tccattgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaacaactt 120
Query: 289 gccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgccct 348
|||| | ||||| || ||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct: 121 gccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaattgctct 180
Query: 349 tgacattaggatacctttggtttcattcactggaagtacaagggctggtctaatggttca 408
||||| ||||||||||||||||||||||| |||||||||| || ||||| |||||||||
Sbjct: 181 tgacacaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatggttca 240
Query: 409 gcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccat 468
|||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 241 gcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaatgccat 300
Query: 469 cattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgt 528
||||| |||||||||||||| || | ||||||||||| ||||| ||||| ||||||||
Sbjct: 301 tattgtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgctgctgt 360
Query: 529 tggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatata 588
||| |||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||
Sbjct: 361 tggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagcatata 420
Query: 589 tcaaaccttccttgatcagcttgttgaggtatacaaacaagtccgaattggggatccgtt 648
|||||| || |||||||| ||||||||||| || ||||||||||| ||||||||||| |
Sbjct: 421 tcaaacatttcttgatcaacttgttgaggtttataaacaagtccgtattggggatcctat 480
Query: 649 ggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactttttgaa 708
||| || |||||||| |||||||||||||||||| |||| |||||||| | |||||||||
Sbjct: 481 ggaaaagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctttttgaa 540
Query: 709 aggcattcagactatcaaatctcagggagggaaaatcctttttggaggatc 759
|||||| || ||||||| ||| |||||||| ||||||||| | ||||||||
Sbjct: 541 aggcatccaaactatcagatcccagggaggaaaaatccttctaggaggatc 591
>gb|BU987033.1|BU987033 HF13J22r HF Hordeum vulgare subsp. vulgare cDNA clone HF13J22
5-PRIME, mRNA sequence
Length = 603
Score = 650 bits (328), Expect = 0.0
Identities = 523/588 (88%)
Strand = Plus / Plus
Query: 173 gcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactcca 232
|||||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||||
Sbjct: 10 gcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctccaactactcca 69
Query: 233 ctgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgcca 292
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 70 ttgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgcca 129
Query: 293 ggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgcccttgac 352
| ||||| || ||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 130 agtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgac 189
Query: 353 attaggatacctttggtttcattcactggaagtacaagggctggtctaatggttcagcaa 412
| ||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||
Sbjct: 190 acaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaa 249
Query: 413 caagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcatt 472
|| ||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 250 caggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaatgccattatt 309
Query: 473 gttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggt 532
|| |||||||||||||| || | ||||||||||| ||||| ||||| |||||||||||
Sbjct: 310 gtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgctgctgttggc 369
Query: 533 acagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaa 592
|||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 370 acagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaa 429
Query: 593 accttccttgatcagcttgttgaggtatacaaacaagtccgaattggggatccgttggag 652
|| || |||||||| ||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 430 acatttcttgatcaacttgttgaggtttataaacaagtccgtattggggatcctatggaa 489
Query: 653 aaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactttttgaaaggc 712
|| |||||||| |||||||||||||||||| |||| |||||||| | |||||||||||||
Sbjct: 490 aagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctttttgaaaggc 549
Query: 713 attcagactatcaaatctcagggagggaaaatcctttttggaggatct 760
|| || ||||||| ||| |||||||| ||||||||| | |||||||||
Sbjct: 550 atccaaactatcagatcccagggaggaaaaatccttctaggaggatct 597
>gb|BU971507.1|BU971507 HB17N06r BC Hordeum vulgare subsp. vulgare cDNA clone HB17N06
5-PRIME, mRNA sequence
Length = 589
Score = 636 bits (321), Expect = 0.0
Identities = 511/575 (88%)
Strand = Plus / Plus
Query: 164 ggttggaatgcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctcca 223
||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||||
Sbjct: 15 ggttggaatgcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctcca 74
Query: 224 acaactccactgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaac 283
|| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 75 actactccattgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaac 134
Query: 284 aacttgccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaatt 343
||||||||| | ||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct: 135 aacttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaatt 194
Query: 344 gcccttgacattaggatacctttggtttcattcactggaagtacaagggctggtctaatg 403
|| ||||||| ||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct: 195 gctcttgacacaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatg 254
Query: 404 gttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaat 463
||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct: 255 gttcagcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaat 314
Query: 464 gccatcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgct 523
||||| ||||| |||||||||||||| || | ||||||||||| ||||| ||||| |||
Sbjct: 315 gccattattgtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgct 374
Query: 524 gctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaac 583
|||| || |||||||| ||||| ||||||||||||||||||||| |||||||||| | |
Sbjct: 375 gctgnnggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagc 434
Query: 584 atatatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccgaattggggat 643
||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 435 atatatcaaacatttcttgatcaacttgttgaggtttataaacaagtccgtattggggat 494
Query: 644 ccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaacttt 703
|| |||| || |||||||| |||||||||||||||||| |||| |||||||| | ||||
Sbjct: 495 cctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaagaaagcttt 554
Query: 704 ttgaaaggcattcagactatcaaatctcagggagg 738
||||||||||| || ||||||| ||| ||||||||
Sbjct: 555 ttgaaaggcatccaaactatcagatcccagggagg 589
>gb|BU989152.1|BU989152 HF19P06r HF Hordeum vulgare subsp. vulgare cDNA clone HF19P06
5-PRIME, mRNA sequence
Length = 621
Score = 636 bits (321), Expect = 0.0
Identities = 489/545 (89%)
Strand = Plus / Plus
Query: 629 gtccgaattggggatccgttggagaaaggcaccttactgggaccactgcacactcctgct 688
||||| ||||||||||| |||| || |||||||| |||||||||||||||||| ||||
Sbjct: 1 gtccgtattggggatcctatggaaaagggcaccttgctgggaccactgcacactactgca 60
Query: 689 tcaaaagagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctt 748
|||||||| | ||||||||||||||| || ||||||| ||| |||||||| |||||||||
Sbjct: 61 tcaaaagaaagctttttgaaaggcatccaaactatcagatcccagggaggaaaaatcctt 120
Query: 749 tttggaggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaatt 808
| ||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 121 ctaggaggatcttctattgaatcagaagggaactttgttcaaccaacaattgtggaaatt 180
Query: 809 acaccttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaa 868
||||| ||| |||||||||| |||||| | ||||||||||||||||||| ||||||
Sbjct: 181 tcacctgatgcgccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaa 240
Query: 869 tttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagt 928
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 241 tttcagaccctgaaggaagcaattgaaatcaacaattctgttcctcaaggattgagcagt 300
Query: 929 tctatatttacaaagaggccagatattatttttaagtggctcgggccccatggtagtgat 988
||||||||||||| || ||||||| |||||| |||||| | ||||| ||||||||||||
Sbjct: 301 tctatatttacaaggaagccagatgctattttcaagtggattgggcctcatggtagtgat 360
Query: 989 tgtggtatagtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggt 1048
||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 361 tgtggtatagtgaatgtaaatatacccactaatggtgctgaaattggtggagcttttggt 420
Query: 1049 ggagaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatg 1108
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 421 ggagaaaaagcaaccggtggcggacgagaagcaggaagtgattcctggaagcaatacatg 480
Query: 1109 aggagggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaat 1168
|||||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||
Sbjct: 481 aggagggctacttgtacaatcaactacggaagcgagctgcctctagcacagggaataaat 540
Query: 1169 tttgg 1173
|||||
Sbjct: 541 tttgg 545
>gb|BU990425.1|BU990425 HF25A07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25A07
5-PRIME, mRNA sequence
Length = 545
Score = 624 bits (315), Expect = e-177
Identities = 480/535 (89%)
Strand = Plus / Plus
Query: 637 tggggatccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaaga 696
||||||||| |||| || |||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 11 tggggatcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaaga 70
Query: 697 gaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggagg 756
| ||||||||||||||| || ||||||| ||| |||||||| ||||||||| | |||||
Sbjct: 71 aagctttttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctaggagg 130
Query: 757 atctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttc 816
|||| | |||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct: 131 atcttctattgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctga 190
Query: 817 tgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagac 876
||| |||||||||| |||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 191 tgcgccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagac 250
Query: 877 cttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatt 936
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 251 cctgaaggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatt 310
Query: 937 tacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtat 996
||||| || ||||||| |||||| |||||| | ||||| ||||||||||||||||||||
Sbjct: 311 tacaaggaagccagatgctattttcaagtggattgggcctcatggtagtgattgtggtat 370
Query: 997 agtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaa 1056
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 371 agtgaatgtaaatatacccactaatggtgctgaaattggtggagcttttggtggagaaaa 430
Query: 1057 agcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggc 1116
|||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 431 agcaaccggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggc 490
Query: 1117 gacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaatttt 1171
||||||||||||||||| || |||||||| |||||||| |||||||| ||||||
Sbjct: 491 tacttgtacaatcaactacggaagcgagctgcctctagcacagggaataaatttt 545
>gb|CA019556.1|CA019556 HV12F21r HV Hordeum vulgare subsp. vulgare cDNA clone HV12F21
5-PRIME, mRNA sequence
Length = 590
Score = 618 bits (312), Expect = e-175
Identities = 513/580 (88%)
Strand = Plus / Plus
Query: 449 cttagcggaaacaatgccatcattgttatggatgatgcagatatccagctagctgtgcga 508
||||| || ||||||||||| ||||| |||||||||||||| || | |||||||||||
Sbjct: 11 cttagtgggaacaatgccattattgtcatggatgatgcagacattccactagctgtgcgt 70
Query: 509 tctgtcttgttcgctgctgttggtacagcaggacaacgctgcactacatgtcgtaggctg 568
||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 71 tctgttttgtttgctgctgttggcacagcagggcaacgatgcactacatgtcgtaggctg 130
Query: 569 attcttcatgagaacatatatcaaaccttccttgatcagcttgttgaggtatacaaacaa 628
|||||||||| | |||||||||||| || |||||||| ||||||||||| || ||||||
Sbjct: 131 cttcttcatgaaagcatatatcaaacatttcttgatcaacttgttgaggtttataaacaa 190
Query: 629 gtccgaattggggatccgttggagaaaggcaccttactgggaccactgcacactcctgct 688
||||| ||||||||||| |||| || |||||||| |||||||||||||||||| ||||
Sbjct: 191 gtccgtattggggatcctatggaaaagggcaccttgctgggaccactgcacactactgca 250
Query: 689 tcaaaagagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctt 748
|||||||| | ||||||||||||||| || ||||||| ||| |||||||| |||||||||
Sbjct: 251 tcaaaagaaagctttttgaaaggcatccaaactatcagatcccagggaggaaaaatcctt 310
Query: 749 tttggaggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaatt 808
| ||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 311 ctaggaggatcttctattgaatcagaagggaactttgttcaaccaacaattgtggaaatt 370
Query: 809 acaccttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaa 868
||||| ||| |||||||||| |||||| | ||||||||||||||||||| ||||||
Sbjct: 371 tcacctgatgcgccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaa 430
Query: 869 tttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagt 928
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 431 tttcagaccctgaaggaagcaattgaaatcaacaattctgttcctcaaggattgagcagt 490
Query: 929 tctatatttacaaagaggccagatattatttttaagtggctcgggccccatggtagtgat 988
||||||||||||| || ||||||| |||||| |||||| | ||||| ||||||||||||
Sbjct: 491 tctatatttacaaggaagccagatgctattttcaagtggattgggcctcatggtagtgat 550
Query: 989 tgtggtatagtgaatgtgaacatacctactaatggtgctg 1028
||||||||||||||||| || ||||| |||||||||||||
Sbjct: 551 tgtggtatagtgaatgtaaatatacccactaatggtgctg 590
>gb|BU984261.1|BU984261 HF03H02r HF Hordeum vulgare subsp. vulgare cDNA clone HF03H02
5-PRIME, mRNA sequence
Length = 559
Score = 613 bits (309), Expect = e-174
Identities = 495/557 (88%)
Strand = Plus / Plus
Query: 227 actccactgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaac 286
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 3 actccattgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaacaac 62
Query: 287 ttgccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgcc 346
|||||| | ||||| || ||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 63 ttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaattgct 122
Query: 347 cttgacattaggatacctttggtttcattcactggaagtacaagggctggtctaatggtt 406
||||||| ||||||||||||||||||||||| |||||||||| || ||||| |||||||
Sbjct: 123 cttgacacaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatggtt 182
Query: 407 cagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgcc 466
|||||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 183 cagcaacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaatgcc 242
Query: 467 atcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgct 526
|| ||||| |||||||||||||| || | ||||||||||| ||||| ||||| ||||||
Sbjct: 243 attattgtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgctgct 302
Query: 527 gttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacata 586
||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||
Sbjct: 303 gttggcacagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagcata 362
Query: 587 tatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccgaattggggatccg 646
|||||||| || |||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 363 tatcaaacatttcttgatcaacttgttgaggtttataaacaagtccgtattggggatcct 422
Query: 647 ttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactttttg 706
|||| || |||||||| |||||||||||||||||| |||| |||||||| | |||||||
Sbjct: 423 atggaaaagggcaccttgctgggaccactgcacactactgcatcaaaagaaagctttttg 482
Query: 707 aaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggatctgccatt 766
|||||||| || ||||||| ||| |||||||| ||||||||| | ||||||||| | |||
Sbjct: 483 aaaggcatccaaactatcagatcccagggaggaaaaatccttctaggaggatcttctatt 542
Query: 767 gaatcagaaggaaactt 783
||||||||||| |||||
Sbjct: 543 gaatcagaagggaactt 559
>gb|BU989978.1|BU989978 HF23H16r HF Hordeum vulgare subsp. vulgare cDNA clone HF23H16
5-PRIME, mRNA sequence
Length = 585
Score = 613 bits (309), Expect = e-174
Identities = 481/537 (89%), Gaps = 1/537 (0%)
Strand = Plus / Plus
Query: 637 tggggatccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaaga 696
||||||||| |||| || |||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 11 tggggatcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaaaga 70
Query: 697 gaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggagg 756
| ||||||||||||||| || ||||||| ||| |||||||| ||||||||| | |||||
Sbjct: 71 aagctttttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctaggagg 130
Query: 757 atctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttc 816
|||| | ||||||| |||||| |||||||| ||||||||||||||||||||| |||||
Sbjct: 131 atcttctattgaat-agaagggaactttgttcaaccaacaattgtggaaatttcacctga 189
Query: 817 tgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagac 876
||| |||||||||| |||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 190 tgcgccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagac 249
Query: 877 cttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatt 936
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 250 cctgaaggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatt 309
Query: 937 tacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtat 996
||||| || ||||||| |||||| |||||| | ||||| ||||||||||||||||||||
Sbjct: 310 tacaaggaagccagatgctattttcaagtggattgggcctcatggtagtgattgtggtat 369
Query: 997 agtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaa 1056
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 370 agtgaatgtaaatatacccactaatggtgctgaaattggtggagcttttggtggagaaaa 429
Query: 1057 agcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggc 1116
|||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 430 agcaaccggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggc 489
Query: 1117 gacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
||||||||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 490 tacttgtacaatcaactacggaagcgagctgcctctagcacagggaataaattttgg 546
>gb|AV926058.1|AV926058 AV926058 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdp07 5', mRNA sequence
Length = 518
Score = 609 bits (307), Expect = e-172
Identities = 463/515 (89%)
Strand = Plus / Plus
Query: 5 gaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccatt 64
||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 gaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccatc 60
Query: 65 ataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtg 124
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 61 ataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgtt 120
Query: 125 ggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgct 184
||||| || || ||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 121 ggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgct 180
Query: 185 ttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactatt 244
|||||||| || || ||||| |||||||| ||||||||||| |||||| |||||||||||
Sbjct: 181 ttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactatt 240
Query: 245 gcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaattttt 304
|||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 241 gcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttc 300
Query: 305 acatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacct 364
||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 301 acagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacct 360
Query: 365 ttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgca 424
|||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||| ||
Sbjct: 361 ttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcg 420
Query: 425 agatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgat 484
||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 421 agatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgat 480
Query: 485 gcagatatccagctagctgtgcgatctgtcttgtt 519
||||| || | ||||||||||| ||||| |||||
Sbjct: 481 gcagacattccactagctgtgcgttctgttttgtt 515
>gb|BJ550240.1|BJ550240 BJ550240 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27j09 5', mRNA sequence
Length = 542
Score = 609 bits (307), Expect = e-172
Identities = 485/543 (89%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 72 ctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgtta 131
||||||| ||||||| ||||||||||||||| |||||||| ||||||||||| ||||| |
Sbjct: 1 ctgaacgcccaaacc-tatgatgatggaggtctggaatcctcttggagttgttggtgtca 59
Query: 132 taacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtct 191
| || ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 60 tcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtct 119
Query: 192 gtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatga 251
| || || ||||| |||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct: 120 gcggcaactgtgttgtctggaagggtgctccaactactccattgatcactattgcaatga 179
Query: 252 caaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatctt 311
| |||||||||||||||||||| |||||||||||||||||| | ||||| || ||| |||
Sbjct: 180 ctaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagctt 239
Query: 312 tttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacctttggttt 371
|||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 240 tttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggttt 299
Query: 372 cattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgcaagatttg 431
||||||| |||||||||| || ||||| ||||||||||||||| ||||| || |||||||
Sbjct: 300 cattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcgagatttg 359
Query: 432 gtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagata 491
|||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |
Sbjct: 360 gtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgatgcagaca 419
Query: 492 tccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgca 551
| | ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 420 ttccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggcaacgatgca 479
Query: 552 ctacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttgatcagcttg 611
||||||||||||||||| |||||||||| | |||||||||||| || |||||||| ||||
Sbjct: 480 ctacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttgatcaacttg 539
Query: 612 ttg 614
|||
Sbjct: 540 ttg 542
>gb|AV924544.1|AV924544 AV924544 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14p17 5', mRNA sequence
Length = 579
Score = 607 bits (306), Expect = e-172
Identities = 459/510 (90%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 66 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 125
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 126 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 185
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 186 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 245
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 246 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 305
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 306 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 365
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 366 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 425
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagttagtgc 423
||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||| ||
Sbjct: 426 tttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgc 485
Query: 424 aagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatga 483
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 486 gagatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatga 545
Query: 484 tgcagatatccagctagctgtgcgatctgt 513
|||||| || | ||||||||||| |||||
Sbjct: 546 tgcagacattccactagctgtgcgttctgt 575
>gb|AV925802.1|AV925802 AV925802 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25o14 5', mRNA sequence
Length = 533
Score = 607 bits (306), Expect = e-172
Identities = 476/533 (89%)
Strand = Plus / Plus
Query: 73 tgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttat 132
|||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 1 tgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgttggtgtcat 60
Query: 133 aacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctg 192
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 61 cacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtctg 120
Query: 193 tggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatgac 252
|| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 121 cggcaactgtgttgtctggaagggtgctccaactactccattgatcactattgcaatgac 180
Query: 253 aaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatcttt 312
|||||||||||||||||||| |||||||||||||||||| | ||||| || ||| ||||
Sbjct: 181 taaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagcttt 240
Query: 313 ttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacctttggtttc 372
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 241 ttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggtttc 300
Query: 373 attcactggaagtacaagggctggtctaatggttcagcaacaagttagtgcaagatttgg 432
|||||| |||||||||| || ||||| ||||||||||||||| ||||| || ||||||||
Sbjct: 301 attcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcgagatttgg 360
Query: 433 taaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagatat 492
||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 361 taaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgatgcagacat 420
Query: 493 ccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcac 552
| ||||||||||| ||||| ||||| ||||||||||| |||||| | ||||| |||||
Sbjct: 421 tccactagctgtgcgttctgttttgtttgctgctgttggcacagcanggcaacgatgcac 480
Query: 553 tacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttgatc 605
|||||||||||||||| |||||||||| | |||||||||||| || |||||||
Sbjct: 481 tacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttgatc 533
>gb|BU990141.1|BU990141 HF24D09r HF Hordeum vulgare subsp. vulgare cDNA clone HF24D09
5-PRIME, mRNA sequence
Length = 529
Score = 605 bits (305), Expect = e-171
Identities = 467/521 (89%)
Strand = Plus / Plus
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 1 gaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgttggtgtcatc 60
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 61 acagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtctgc 120
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatgaca 253
|| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 121 ggcaactgtgttgtctggaagggtgctccaactactccattgatcactattgcaatgact 180
Query: 254 aaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatctttt 313
|||||||||||||||||||| |||||||||||||||||| | ||||| || ||| |||||
Sbjct: 181 aaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagctttt 240
Query: 314 tgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacctttggtttca 373
|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 241 tgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggtttca 300
Query: 374 ttcactggaagtacaagggctggtctaatggttcagcaacaagttagtgcaagatttggt 433
||||| |||||||||| || ||||| ||||||||||||||| ||||| || |||||||||
Sbjct: 301 ttcacaggaagtacaaaggttggtcaaatggttcagcaacaggttagcgcgagatttggt 360
Query: 434 aaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagatatc 493
|||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 361 aaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgatgcagacatt 420
Query: 494 cagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcact 553
| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||||
Sbjct: 421 ccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggcaacgatgcact 480
Query: 554 acatgtcgtaggctgattcttcatgagaacatatatcaaac 594
||||||||||||||| |||||||||| | ||||||||||||
Sbjct: 481 acatgtcgtaggctgcttcttcatgaaagcatatatcaaac 521
>gb|BU968849.1|BU968849 HB08M11r BC Hordeum vulgare subsp. vulgare cDNA clone HB08M11
5-PRIME, mRNA sequence
Length = 604
Score = 597 bits (301), Expect = e-169
Identities = 493/557 (88%)
Strand = Plus / Plus
Query: 274 ggagaagaacaacttgccaggcgcaatttttacatctttttgtgggggcactgaaattgg 333
||||||||||||||||||| | ||||| || ||| ||||||||||||| ||||||||||
Sbjct: 34 ggagaagaacaacttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattgg 93
Query: 334 tcaagcaattgcccttgacattaggatacctttggtttcattcactggaagtacaagggc 393
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct: 94 tcaagcaattgctcttgacacaaggatacctttggtttcattcacaggaagtacaaaggt 153
Query: 394 tggtctaatggttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttag 453
||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 154 tggtcaaatggttcagcaacaggttagcgcgagatttggtaaatgccttcttgaacttag 213
Query: 454 cggaaacaatgccatcattgttatggatgatgcagatatccagctagctgtgcgatctgt 513
|| ||||||||||| ||||| |||||||||||||| || | ||||||||||| |||||
Sbjct: 214 tgggaacaatgccattattgtcatggatgatgcagacattccactagctgtgcgttctgt 273
Query: 514 cttgttcgctgctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattct 573
||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||
Sbjct: 274 tttgtttgctgctgttggcacagcagggcaacgatgcactacatgtcgtaggctgcttct 333
Query: 574 tcatgagaacatatatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccg 633
|||||| | |||||||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 334 tcatgaaagcatatatcaaacatttcttgatcaacttgttgaggtttataaacaagtccg 393
Query: 634 aattggggatccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaa 693
||||||||||| |||| || |||||||| |||||||||||||||||| |||| |||||
Sbjct: 394 tattggggatcctatggaaaagggcaccttgctgggaccactgcacactactgcatcaaa 453
Query: 694 agagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttgg 753
||| | ||||||||||||||| || ||||||| ||| |||||||| ||||||||| | ||
Sbjct: 454 agaaagctttttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctagg 513
Query: 754 aggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacacc 813
||||||| | |||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct: 514 aggatcttctattgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacc 573
Query: 814 ttctgcaccagttgtga 830
| ||| ||||||||||
Sbjct: 574 tgatgcgccagttgtga 590
>gb|AV929641.1|AV929641 AV929641 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd14p17 3', mRNA sequence
Length = 688
Score = 577 bits (291), Expect = e-163
Identities = 426/471 (90%)
Strand = Plus / Minus
Query: 703 tttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggatctgc 762
|||||||||||| || ||||||| ||| |||||||| ||||||||| | ||||||||| |
Sbjct: 688 tttgaaaggcatccaaactatcagatcccagggaggaaaaatccttctaggaggatcttc 629
Query: 763 cattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcacc 822
|||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct: 628 tattgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgcc 569
Query: 823 agttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaa 882
|||||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 568 agttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaa 509
Query: 883 ggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaa 942
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaag 449
Query: 943 gaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaa 1002
|| ||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 448 gaagccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaa 389
Query: 1003 tgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaac 1062
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 tgtaaatatacctactaatggtgctgaaattggtggagcttttggtggagaaaaagcaac 329
Query: 1063 tggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttg 1122
||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 328 cggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttg 269
Query: 1123 tacaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 268 tacaatcaactacggaagcgagctgcctctagcacagggaataaattttgg 218
>gb|CA012599.1|CA012599 HT05O05r HT Hordeum vulgare subsp. vulgare cDNA clone HT05O05
5-PRIME, mRNA sequence
Length = 526
Score = 569 bits (287), Expect = e-161
Identities = 459/515 (89%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 173 gcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactcca 232
|||||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||||
Sbjct: 10 gcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctccaactactcca 69
Query: 233 ctgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgcca 292
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 70 ttgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgcca 129
Query: 293 ggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgcccttgac 352
| ||||| || ||| ||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 130 agtgcaatcttcacagctttt-gtgggggtgctgaaattggtcaagcaattgctcttgac 188
Query: 353 attaggatacctttggtttcattcactggaagtacaagggctggtctaatggttcagcaa 412
| ||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||
Sbjct: 189 acaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaa 248
Query: 413 caagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcatt 472
|| ||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 249 caggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaatgccattatt 308
Query: 473 gttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggt 532
|| |||||||||||||| || | ||||||||||| ||||| ||||| |||||||||||
Sbjct: 309 gtcatggatgatgcagacattccactagctgtgcgttctgttttgtttgctgctgttggc 368
Query: 533 acagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaa 592
|||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 369 acagcagggcaacgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaa 428
Query: 593 accttccttgatcagcttgttgaggtatacaaacaagtccgaattggggatccgttggag 652
|| || |||||||| ||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 429 acatttcttgatcaacttgttgaggtttataaacaagtccgtattggggatcctatggaa 488
Query: 653 aaaggcaccttactgggaccactgcacactcctgc 687
|| |||||||| |||||||||||||||||| ||||
Sbjct: 489 aagggcaccttgctgggaccactgcacactactgc 523
>gb|BU973182.1|BU973182 HB24A03r BC Hordeum vulgare subsp. vulgare cDNA clone HB24A03
5-PRIME, mRNA sequence
Length = 517
Score = 553 bits (279), Expect = e-156
Identities = 447/503 (88%)
Strand = Plus / Plus
Query: 425 agatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatggatgat 484
||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 15 agatttggtaaatgccttcttgaacttagtgggaacaatgccattattgtcatggatgat 74
Query: 485 gcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaa 544
||||| || | ||||||||||| ||||| ||||| ||||||||||| |||||||| |||
Sbjct: 75 gcagacattccactagctgtgcgttctgttttgtttgctgctgttggcacagcagggcaa 134
Query: 545 cgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttgat 604
|| ||||||||||||||||||||| |||||||||| | |||||||||||| || ||||||
Sbjct: 135 cgatgcactacatgtcgtaggctgcttcttcatgaaagcatatatcaaacatttcttgat 194
Query: 605 cagcttgttgaggtatacaaacaagtccgaattggggatccgttggagaaaggcacctta 664
|| ||||||||||| || ||||||||||| ||||||||||| |||| || ||||||||
Sbjct: 195 caacttgttgaggtttataaacaagtccgtattggggatcctatggaaaagggcaccttg 254
Query: 665 ctgggaccactgcacactcctgcttcaaaagagaactttttgaaaggcattcagactatc 724
|||||||||||||||||| |||| |||||||| | ||||||||||||||| || ||||||
Sbjct: 255 ctgggaccactgcacactactgcatcaaaagaaagctttttgaaaggcatccaaactatc 314
Query: 725 aaatctcagggagggaaaatcctttttggaggatctgccattgaatcagaaggaaacttt 784
| ||| |||||||| ||||||||| | ||||||||| | |||||||||||||| ||||||
Sbjct: 315 agatcccagggaggaaaaatccttctaggaggatcttctattgaatcagaagggaacttt 374
Query: 785 gtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaagaagaactcttt 844
|| ||||||||||||||||||||| ||||| ||| |||||||||| |||||| | |||
Sbjct: 375 gttcaaccaacaattgtggaaatttcacctgatgcgccagttgtgagggaagaattgttt 434
Query: 845 ggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataac 904
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 435 ggtcctgtcctttatgccatgaaatttcagaccctgaaggaagcaattgaaatcaacaat 494
Query: 905 tctgttcctcaaggattgagcag 927
|||||||||||||||||||||||
Sbjct: 495 tctgttcctcaaggattgagcag 517
>gb|CA021912.1|CA021912 HZ41I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41I10
5-PRIME, mRNA sequence
Length = 480
Score = 551 bits (278), Expect = e-155
Identities = 422/470 (89%)
Strand = Plus / Plus
Query: 50 ctaaatggatccattataccatctgaacgaccaaaccatatgatgatggaggtgtggaat 109
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 7 ctaaatggatccatcataccatctgaacgcccaaaccatatgatgatggaggtctggaat 66
Query: 110 ccccttggagttgtgggtgttataacggcatttaatttcccttgtgctgtgcttggttgg 169
|| ||||||||||| ||||| || || ||||| ||||||||||| || ||||| ||||||
Sbjct: 67 cctcttggagttgttggtgtcatcacagcattcaatttcccttgcgccgtgctgggttgg 126
Query: 170 aatgcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaact 229
||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||
Sbjct: 127 aatgcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctccaactact 186
Query: 230 ccactgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttg 289
||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 187 ccattgatcactattgcaatgactaaaatagtggctagtgtatttgagaagaacaacttg 246
Query: 290 ccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgccctt 349
||| | ||||| || ||| ||||||||||||| |||||||||||||||||||||| |||
Sbjct: 247 ccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaattgctctt 306
Query: 350 gacattaggatacctttggtttcattcactggaagtacaagggctggtctaatggttcag 409
|||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||||
Sbjct: 307 gacacaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatggttcag 366
Query: 410 caacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatc 469
||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 367 caacaggttagcgcgagatttggtaaatgccttcttgaacttagtgggaacaatgccatt 426
Query: 470 attgttatggatgatgcagatatccagctagctgtgcgatctgtcttgtt 519
||||| |||||||||||||| || | ||||||||||| ||||| |||||
Sbjct: 427 attgtcatggatgatgcagacattccactagctgtgcgttctgttttgtt 476
>gb|BM378027.2|BM378027 EBem04_SQ004_P03_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_P03 5', mRNA sequence
Length = 600
Score = 547 bits (276), Expect = e-154
Identities = 408/452 (90%)
Strand = Plus / Plus
Query: 722 atcaaatctcagggagggaaaatcctttttggaggatctgccattgaatcagaaggaaac 781
|||| ||| |||||||| ||||||||| | ||||||||| | |||||||||||||| |||
Sbjct: 13 atcagatcccagggaggaaaaatccttctaggaggatcttctattgaatcagaagggaac 72
Query: 782 tttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaagaagaactc 841
||||| ||||||||||||||||||||| ||||| ||| |||||||||| |||||| |
Sbjct: 73 tttgttcaaccaacaattgtggaaatttcacctgatgcgccagttgtgagggaagaattg 132
Query: 842 tttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaat 901
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 133 tttggtcctgtcctttatgccatgaaatttcagaccctgaaggaagcaattgaaatcaac 192
Query: 902 aactctgttcctcaaggattgagcagttctatatttacaaagaggccagatattattttt 961
|| ||||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct: 193 aattctgttcctcaaggattgagcagttctatatttacaaggaagccagatgctattttc 252
Query: 962 aagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaat 1021
|||||| | ||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 253 aagtggattgggcctcatggtagtgattgtggtatagtgaatgtaaatatacctactaat 312
Query: 1022 ggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtggacgagaagca 1081
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 313 ggtgctgaaattggtggagcttttggtggagaaaaagcaaccggtggcggacgagaagca 372
Query: 1082 gggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaactatgggagc 1141
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||
Sbjct: 373 ggaagtgattcctggaagcaatacatgaggagggctacttgtacaatcaactacggaagc 432
Query: 1142 gagctacctctagcccagggaatcaattttgg 1173
||||| |||||| | |||||||| ||||||||
Sbjct: 433 gagctgcctctatcacagggaataaattttgg 464
>gb|BM816378.1|BM816378 HC114E04_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114E04_SK.ab1 similar to Benzaldehyde dehydrogenase
(NAD ), mRNA sequence
Length = 833
Score = 525 bits (265), Expect = e-147
Identities = 373/409 (91%)
Strand = Plus / Plus
Query: 765 ttgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccag 824
||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||
Sbjct: 28 ttgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgccag 87
Query: 825 ttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaagg 884
|||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 88 ttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaagg 147
Query: 885 aagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaaga 944
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 148 aagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaagga 207
Query: 945 ggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatg 1004
||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 208 agccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaatg 267
Query: 1005 tgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactg 1064
| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 268 taaatatacctactaatggtgctgaaattggtggagcttttggtggagaaaaagcaaccg 327
Query: 1065 gtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgta 1124
|||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 328 gtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttgta 387
Query: 1125 caatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 388 caatcaactacggaagcgagctgcctctagcacagggaataaattttgg 436
>gb|BM816379.1|BM816379 HC114C12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114C12_SK.ab1 similar to Benzaldehyde dehydrogenase
(NAD ), mRNA sequence
Length = 863
Score = 525 bits (265), Expect = e-147
Identities = 373/409 (91%)
Strand = Plus / Plus
Query: 765 ttgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccag 824
||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||
Sbjct: 28 ttgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgccag 87
Query: 825 ttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaagg 884
|||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 88 ttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaagg 147
Query: 885 aagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaaga 944
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 148 aagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaagga 207
Query: 945 ggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatg 1004
||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 208 agccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaatg 267
Query: 1005 tgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactg 1064
| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 268 taaatatacctactaatggtgctgaaattggtggagcttttggtggagaaaaagcaaccg 327
Query: 1065 gtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgta 1124
|||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 328 gtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttgta 387
Query: 1125 caatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 388 caatcaactacggaagcgagctgcctctagcacagggaataaattttgg 436
>gb|AV931884.1|AV931884 AV931884 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26i21 3', mRNA sequence
Length = 638
Score = 523 bits (264), Expect = e-147
Identities = 372/408 (91%)
Strand = Plus / Minus
Query: 766 tgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagt 825
|||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| |||||
Sbjct: 638 tgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgccagt 579
Query: 826 tgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaagga 885
||||| |||||| | ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 578 tgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaagga 519
Query: 886 agcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagag 945
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 518 agcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaaggaa 459
Query: 946 gccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgt 1005
||||||| |||||| |||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 458 gccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaatgt 399
Query: 1006 gaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactgg 1065
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 398 aaatatacctactaatggtgctgaaattggtggagcttttggtggagaaaaagcaaccgg 339
Query: 1066 tggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtac 1125
||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 338 tggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttgtac 279
Query: 1126 aatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 278 aatcaactacggaagcgagctgcctctagcacagggaataaattttgg 231
>gb|BG416313.2|BG416313 HVSMEk0011E06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0011E06f, mRNA sequence
Length = 1035
Score = 519 bits (262), Expect = e-146
Identities = 559/654 (85%), Gaps = 3/654 (0%)
Strand = Plus / Plus
Query: 164 ggttggaatgcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctcca 223
||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||||
Sbjct: 2 ggttggaatgcttgcattgctttggtctgcggcaactgtgttgtctggaagggtgctcca 61
Query: 224 acaactccactgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaac 283
|| |||||| ||||||||||||||||||| || ||| ||||||||||||| || ||||||
Sbjct: 62 actactccattgatcactattgcaatgactaatatattggctagtgtatttgacaagaac 121
Query: 284 aacttgccaggcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaatt 343
||||||||| | ||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct: 122 aacttgccaagtgcaatcttcacagctttttgtgggggtgctgaaattggtcaagcaatt 181
Query: 344 gcccttgacattaggatacctttggtttcattcactggaagtacaagggctggtctaatg 403
|| ||||||| ||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct: 182 gctcttgacacaaggatacctttggtttcattcacaggaagtacaaaggttggtcaaatg 241
Query: 404 gttcagcaacaagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaat 463
||||||||||| |||| || |||||||| ||||||||| |||||||||| || ||||||
Sbjct: 242 gttcagcaacaggttaccgcgagatttggcaaatgccttattgaacttagtgggaacaat 301
Query: 464 gccatcattgttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgct 523
||||| |||| |||||||||||| | ||| || |||||||| ||||| ||||| |||
Sbjct: 302 gccattattgccatggatgatgcaaacgtcccacttgctgtgcgttctgttttgttagct 361
Query: 524 gctgttggtacagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaac 583
||||| || |||||||| |||| ||||||||||||||||||||| ||||||||| | |
Sbjct: 362 gctgtgggcacagcagggcaactatgcactacatgtcgtaggctgcatcttcatgaaagc 421
Query: 584 atatatcaaaccttccttgatcagct-tgttgaggtatacaaacaagtccgaattgggga 642
||||||||||| || |||||||| || |||||||| | ||||||||||| |||||||
Sbjct: 422 atatatcaaacatttcttgatcaactacgttgaggttaataaacaagtccgctttgggga 481
Query: 643 tccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaaagagaactt 702
||| |||| || |||||||| |||||||||||| ||| |||| |||| ||| | ||
Sbjct: 482 tcctatggaaaagggcaccttgttgggaccactgccaactactgcatcaagagaaatctg 541
Query: 703 tttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggatctgc 762
|||||||||||| || ||||||||||| || ||||| ||||||||| | ||||||||| |
Sbjct: 542 tttgaaaggcatccaaactatcaaatcccatggaggaaaaatccttctaggaggatcttc 601
Query: 763 cattgaatcagaagg-aaactttgtgcaaccaacaattgtgg-aaattacacct 814
|||||||||||||| | ||||||| | |||||||| |||| |||||||||||
Sbjct: 602 tattgaatcagaaggtatactttgttctcccaacaatggtggaaaattacacct 655
>gb|BU988804.1|BU988804 HF18M05r HF Hordeum vulgare subsp. vulgare cDNA clone HF18M05
5-PRIME, mRNA sequence
Length = 617
Score = 519 bits (262), Expect = e-146
Identities = 373/410 (90%)
Strand = Plus / Plus
Query: 764 attgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcacca 823
|||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| |||
Sbjct: 11 attgaatcagaagggaactttgttcaaccaacaattgtggaaatttcacctgatgcgcca 70
Query: 824 gttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaag 883
||||||| |||||| | ||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 71 gttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaag 130
Query: 884 gaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaag 943
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct: 131 gaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaagg 190
Query: 944 aggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaat 1003
| ||||||| |||||| |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 191 aagccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaat 250
Query: 1004 gtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaact 1063
|| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 251 gtaaatatacccactaatggtgctgaaattggtggagcttttggtggagaaaaagcaacc 310
Query: 1064 ggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgt 1123
||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 311 ggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttgt 370
Query: 1124 acaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 371 acaatcaactacggaagcgagctgcctctagcacagggaataaattttgg 420
>gb|AV928859.1|AV928859 AV928859 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd15p07 3', mRNA sequence
Length = 573
Score = 513 bits (259), Expect = e-144
Identities = 374/411 (90%), Gaps = 1/411 (0%)
Strand = Plus / Minus
Query: 764 attgaatcagaaggaaactttgtgcaaccaac-aattgtggaaattacaccttctgcacc 822
|||||||||||||| |||||||| |||||||| ||||||||||||| ||||| ||| ||
Sbjct: 567 attgaatcagaagggaactttgttcaaccaaccaattgtggaaatttcacctgatgcgcc 508
Query: 823 agttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaa 882
|||||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 507 agttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctgaa 448
Query: 883 ggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaa 942
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttacaag 388
Query: 943 gaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaa 1002
|| ||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 387 gaagccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtgaa 328
Query: 1003 tgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaac 1062
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 tgtaaatatacctactaatggtgctgaaattggtggagcttttggtggagaaaaagcaac 268
Query: 1063 tggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttg 1122
||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 267 cggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctacttg 208
Query: 1123 tacaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 207 tacaatcaactacggaagcgagctgcctctagcacagggaataaattttgg 157
>gb|AL509129.1|AL509129 AL509129 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10M17V 5',
mRNA sequence
Length = 700
Score = 507 bits (256), Expect = e-142
Identities = 376/416 (90%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 222 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 281
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 282 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 341
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 342 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 401
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 402 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 461
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 462 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 521
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 522 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 581
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagtta 419
||||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||
Sbjct: 582 tttggtttcattcacaggaagtacaaaggttggtcaaatggttcagcaacaggtta 637
>gb|BJ549457.1|BJ549457 BJ549457 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35e17 5', mRNA sequence
Length = 440
Score = 505 bits (255), Expect = e-141
Identities = 369/407 (90%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 27 gacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccatcataccatct 86
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct: 87 gaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgttggtgtcatc 146
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 147 acagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgctttggtctgc 206
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactattgcaatgaca 253
|| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 207 ggcaactgtgttgtctggaagggtgctccaactactccattgatcactattgcaatgact 266
Query: 254 aaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttttacatctttt 313
|||||||||||||||||||| |||||||||||||||||| | ||||| || ||| |||||
Sbjct: 267 aaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatcttcacagctttt 326
Query: 314 tgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacctttggtttca 373
|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 327 tgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacctttggtttca 386
Query: 374 ttcactggaagtacaagggctggtctaatggttcagcaacaagttag 420
||||| |||||||||| || ||||| ||||||||||||||| |||||
Sbjct: 387 ttcacaggaagtacaaaggttggtcaaatggttcagcaacaggttag 433
>gb|BJ466480.1|BJ466480 BJ466480 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32f22 3', mRNA sequence
Length = 686
Score = 496 bits (250), Expect = e-138
Identities = 352/386 (91%)
Strand = Plus / Minus
Query: 788 caaccaacaattgtggaaattacaccttctgcaccagttgtgaaagaagaactctttggt 847
||||||||||||||||||||| ||||| ||| |||||||||| |||||| | ||||||
Sbjct: 684 caaccaacaattgtggaaatttcacctgatgcgccagttgtgagggaagaattgtttggt 625
Query: 848 cctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactct 907
||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||
Sbjct: 624 cctgtcctttatgccatgaaatttcagaccctgaaggaagcaattgaaatcaacaattct 565
Query: 908 gttcctcaaggattgagcagttctatatttacaaagaggccagatattatttttaagtgg 967
|||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||
Sbjct: 564 gttcctcaaggattgagcagttctatatttacaaggaagccagatgctattttcaagtgg 505
Query: 968 ctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgct 1027
| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 504 attgggcctcatggtagtgattgtggtatagtgaatgtaaatatacctactaatggtgct 445
Query: 1028 gaaattggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagt 1087
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 444 gaaattggtggagcttttggtggagaaaaagcaaccggtggcggacgagaagcaggaagt 385
Query: 1088 gattcctggaagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagcta 1147
|||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 384 gattcctggaagcaatacatgaggagggctacttgtacaatcaactacggaagcgagctg 325
Query: 1148 cctctagcccagggaatcaattttgg 1173
|||||||| |||||||| ||||||||
Sbjct: 324 cctctagcacagggaataaattttgg 299
>gb|BI949281.1|BI949281 HVSMEl0013C08f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013C08f, mRNA sequence
Length = 489
Score = 484 bits (244), Expect = e-135
Identities = 370/412 (89%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 76 ggaaattattgacatgcgtgattatgctgtggggctaagtcgtcagctaaatggatccat 135
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 136 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 195
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 196 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 255
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 256 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 315
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 316 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 375
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 376 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 435
Query: 364 tttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaa 415
||||||||||||| | |||||||||| || ||||| ||||||||| ||||||
Sbjct: 436 tttggtttcattcccaggaagtacaaaggttggtcaaatggttcaacaacaa 487
>gb|BJ466968.1|BJ466968 BJ466968 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35e17 3', mRNA sequence
Length = 668
Score = 480 bits (242), Expect = e-134
Identities = 344/378 (91%)
Strand = Plus / Minus
Query: 796 aattgtggaaattacaccttctgcaccagttgtgaaagaagaactctttggtcctgtcct 855
||||||||||||| ||||| ||| |||||||||| |||||| | ||||||||||||||
Sbjct: 668 aattgtggaaatttcacctgatgcgccagttgtgagggaagaattgtttggtcctgtcct 609
Query: 856 ttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttcctca 915
||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct: 608 ttatgccatgaaatttcagaccctgaaggaagcaattgaaatcaacaattctgttcctca 549
Query: 916 aggattgagcagttctatatttacaaagaggccagatattatttttaagtggctcgggcc 975
|||||||||||||||||||||||||| || ||||||| |||||| |||||| | |||||
Sbjct: 548 aggattgagcagttctatatttacaaggaagccagatgctattttcaagtggattgggcc 489
Query: 976 ccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaattgg 1035
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 488 tcatggtagtgattgtggtatagtgaatgtaaatatacctactaatggtgctgaaattgg 429
Query: 1036 tggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgattcctg 1095
|||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 428 tggagcttttggtggagaaaaagcaaccggtggcggacgagaagcaggaagtgattcctg 369
Query: 1096 gaagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagctacctctagc 1155
|||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||
Sbjct: 368 gaagcaatacatgaggagggctacttgtacaatcaactacggaagcgagctgcctctagc 309
Query: 1156 ccagggaatcaattttgg 1173
|||||||| ||||||||
Sbjct: 308 acagggaataaattttgg 291
>gb|CA000067.1|CA000067 HS16D15u HS Hordeum vulgare subsp. vulgare cDNA clone HS16D15
3-PRIME, mRNA sequence
Length = 546
Score = 470 bits (237), Expect = e-131
Identities = 342/377 (90%)
Strand = Plus / Minus
Query: 797 attgtggaaattacaccttctgcaccagttgtgaaagaagaactctttggtcctgtcctt 856
|||||||||||| ||||| ||| |||||||||| |||||| | |||||||||||||||
Sbjct: 546 attgtggaaatttcacctgatgcgccagttgtgagggaagaattgtttggtcctgtcctt 487
Query: 857 tatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaa 916
|||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 486 tatgccatgaaatttcagaccctgaaggaagcaattgaaatcaacaattctgttcctcaa 427
Query: 917 ggattgagcagttctatatttacaaagaggccagatattatttttaagtggctcgggccc 976
||||||||||||||||||||||||| || ||||||| |||||| |||||| | |||||
Sbjct: 426 ggattgagcagttctatatttacaaggaagccagatgctattttcaagtggattgggcct 367
Query: 977 catggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaattggt 1036
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 366 catggtagtgattgtggtatagtgaatgtaaatatacccactaatggtgctgaaattggt 307
Query: 1037 ggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgattcctgg 1096
||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 306 ggagcttttggtggagaaaaagcaaccggtggcggacgagaagcaggaagtgattcctgg 247
Query: 1097 aagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagctacctctagcc 1156
||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||
Sbjct: 246 aagcaatacatgaggagggctacttgtacaatcaactacggaagcgagctgcctctagca 187
Query: 1157 cagggaatcaattttgg 1173
|||||||| ||||||||
Sbjct: 186 cagggaataaattttgg 170
>gb|BQ469709.1|BQ469709 HZ01K03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01K03
5-PRIME, mRNA sequence
Length = 480
Score = 460 bits (232), Expect = e-128
Identities = 337/372 (90%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 109 ggaaattattgacatgtgtgattatgctgtggggctaagtcgtcagctaaatggatccat 168
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 169 cataccatctgaacgcccaaaccatatgatgatggaggtctggaatcctcttggagttgt 228
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 229 tggtgtcatcacagcattcaatttcccttgcgccgtgctgggttggaatgcttgcattgc 288
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||| || || ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 289 tttggtctgcggcaactgtgttgtctggaagggtgctccaactactccattgatcactat 348
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct: 349 tgcaatgactaaaatagtggctagtgtatttgagaagaacaacttgccaagtgcaatctt 408
Query: 304 tacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattaggatacc 363
||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 409 cacagctttttgtgggggtgctgaaattggtcaagcaattgctcttgacacaaggatacc 468
Query: 364 tttggtttcatt 375
||||||||||||
Sbjct: 469 tttggtttcatt 480
>gb|BI950374.1|BI950374 HVSMEl0020G24f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0020G24f, mRNA sequence
Length = 921
Score = 454 bits (229), Expect = e-126
Identities = 322/353 (91%)
Strand = Plus / Plus
Query: 821 ccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttg 880
|||||||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||
Sbjct: 16 ccagttgtgagggaagaattgtttggtcctgtcctttatgccatgaaatttcagaccctg 75
Query: 881 aaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttaca 940
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 76 aaggaagcaattgaaatcaacaattctgttcctcaaggattgagcagttctatatttaca 135
Query: 941 aagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtg 1000
| || ||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||
Sbjct: 136 aggaagccagatgctattttcaagtggattgggcctcatggtagtgattgtggtatagtg 195
Query: 1001 aatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagca 1060
||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 196 aatgtaaatatacccactaatggtgctgaaattggtggagcttttggtggagaaaaagca 255
Query: 1061 actggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgact 1120
|| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 256 accggtggcggacgagaagcaggaagtgattcctggaagcaatacatgaggagggctact 315
Query: 1121 tgtacaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct: 316 tgtacaatcaactacggaagcgagctgcctctagcacagggaataaattttgg 368
>gb|CB859475.1|CB859475 HI10J06w HI Hordeum vulgare subsp. vulgare cDNA clone HI10J06
3-PRIME, mRNA sequence
Length = 562
Score = 424 bits (214), Expect = e-117
Identities = 297/325 (91%)
Strand = Plus / Minus
Query: 849 ctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctg 908
|||||||||||| |||| |||||||||| |||||||||||||||||||||| || ||||
Sbjct: 562 ctgtcctttatgccatganatttcagaccctgaaggaagcaattgaaatcaacaattctg 503
Query: 909 ttcctcaaggattgagcagttctatatttacaaagaggccagatattatttttaagtggc 968
||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||
Sbjct: 502 ttcctcaaggattgagcagttctatatttacaaggaagccagatgctattttcaagtgga 443
Query: 969 tcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctg 1028
| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 442 ttgggcctcatggtagtgattgtggtatagtgaatgtaaatatacccactaatggtgctg 383
Query: 1029 aaattggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtg 1088
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 382 aaattggtggagcttttggtggagaaaaagcaaccggtggcggacgagaagcaggaagtg 323
Query: 1089 attcctggaagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagctac 1148
||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 322 attcctggaagcaatacatgaggagggctacttgtacaatcaactacggaagcgagctgc 263
Query: 1149 ctctagcccagggaatcaattttgg 1173
||||||| |||||||| ||||||||
Sbjct: 262 ctctagcacagggaataaattttgg 238
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,441
Number of Sequences: 312970
Number of extensions: 132441
Number of successful extensions: 34325
Number of sequences better than 0.5: 88
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34111
Number of HSP's gapped (non-prelim): 184
length of query: 1462
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1443
effective length of database: 169,188,109
effective search space: 244138441287
effective search space used: 244138441287
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)