BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke devel... 618 e-176
gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm libra... 618 e-176
gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no... 611 e-173
gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedl... 581 e-164
gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, wat... 565 e-159
gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgar... 553 e-156
gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 ... 440 e-122
gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke devel... 291 2e-077
gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. v... 224 4e-057
gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. v... 224 4e-057
gb|AV833948.1|AV833948 AV833948 K. Sato unpublished cDNA li... 52 3e-005
gb|AV833749.1|AV833749 AV833749 K. Sato unpublished cDNA li... 48 5e-004
gb|BE421665.1|BE421665 HWM012cE.09r ITEC HWM Barley Leaf Li... 42 0.033
gb|BE422074.1|BE422074 HWM019cF.08r ITEC HWM Barley Leaf Li... 42 0.033
gb|BM816682.1|BM816682 HC114F05_SK.ab1 HC Hordeum vulgare s... 40 0.13
gb|BJ447329.1|BJ447329 BJ447329 K. Sato unpublished cDNA li... 40 0.13
gb|BJ462997.1|BJ462997 BJ462997 K. Sato unpublished cDNA li... 40 0.13
gb|CA030817.1|CA030817 HX08D11r HX Hordeum vulgare subsp. v... 40 0.13
gb|BJ547926.1|BJ547926 BJ547926 K. Sato unpublished cDNA li... 40 0.13
>gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09T 5',
mRNA sequence
Length = 700
Score = 618 bits (312), Expect = e-176
Identities = 396/424 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 116 agttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgagt 175
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 235
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 236 ccatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatca 295
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||| || || || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 296 tccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtcg 355
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|| | |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||
Sbjct: 356 gcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaaga 415
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct: 416 tcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctact 475
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||| || || || |||||||||||||| |||||||||||||| |||||||
Sbjct: 476 acctcgtccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatca 535
Query: 509 agcc 512
||||
Sbjct: 536 agcc 539
>gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL62h11 5' similar to mago
nashi-like protein, mRNA sequence
Length = 554
Score = 618 bits (312), Expect = e-176
Identities = 396/424 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 92 agttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgagt 151
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 211
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 212 ccatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatca 271
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||| || || || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 272 tccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtcg 331
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|| | |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||
Sbjct: 332 gcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaaga 391
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct: 392 tcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctact 451
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||||||||| || || || |||||||||||||| |||||||||||||| |||||||
Sbjct: 452 acctcgtccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatca 511
Query: 509 agcc 512
||||
Sbjct: 512 agcc 515
>gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G09 5', mRNA sequence
Length = 540
Score = 611 bits (308), Expect = e-173
Identities = 395/424 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 94 agttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgagt 153
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 213
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 214 ccatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatca 273
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||| || || || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 274 tccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtcg 333
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|| | |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||
Sbjct: 334 gcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaaga 393
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct: 394 tcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctact 453
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
||||||| ||||| || || || |||||||||||||| |||||||||||||| |||||||
Sbjct: 454 acctcgtgcaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatca 513
Query: 509 agcc 512
||||
Sbjct: 514 agcc 517
>gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006F16f, mRNA sequence
Length = 473
Score = 581 bits (293), Expect = e-164
Identities = 371/397 (93%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 74 agttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgagt 133
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 193
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 194 ccatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatca 253
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||| || || || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 254 tccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtcg 313
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|| | |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||
Sbjct: 314 gcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaaga 373
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct: 374 tcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctact 433
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcact 485
||||||||||||| || || || ||||||||||||||
Sbjct: 434 acctcgtccaggaccttaaatgtttcgtgttttcact 470
>gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J16 5', mRNA sequence
Length = 544
Score = 565 bits (285), Expect = e-159
Identities = 366/393 (93%)
Strand = Plus / Plus
Query: 120 gggcaagttcgggcacgagttcctcgagttcgagttccgccccgacggcaagctccgcta 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcaagttcggccacgagttcctcgagttcgagttccgccccgacggcaagctccgcta 60
Query: 180 cgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcccc 120
Query: 240 ctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacga 299
|||||| ||||||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 121 ctccgtgctccgcgaggcgaggaggatcatccaggactcggagataatgaaggaggacga 180
Query: 300 cagcaactggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggcaa 359
|||||||||||| |||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 181 cagcaactggccggagcccgaccgcgtcggcaggcaggagctcgagattgtcatgggcaa 240
Query: 360 cgaacacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaa 419
||| ||||| || |||||||| |||||||||||||||||||| || |||||| |||||||
Sbjct: 241 cgagcacatctccttcaccacctccaagatcggctccctcgttgacgtccagaccagcaa 300
Query: 420 ggacccggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtgtt 479
|||||||||||| ||||| ||||||||||||||||||||||| || || || ||||||||
Sbjct: 301 ggacccggagggcctccgcatcttctactacctcgtccaggaccttaaatgtttcgtgtt 360
Query: 480 ttcactcatcaacctccacttcaagatcaagcc 512
|||||| |||||||||||||| |||||||||||
Sbjct: 361 ttcacttatcaacctccactttaagatcaagcc 393
>gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A192 5-PRIME, mRNA sequence
Length = 588
Score = 553 bits (279), Expect = e-156
Identities = 360/387 (93%)
Strand = Plus / Plus
Query: 126 gttcgggcacgagttcctcgagttcgagttccgccccgacggcaagctccgctacgccaa 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcggccacgagttcctcgagttcgagttccgccccgacggcaagctccgctacgccaa 60
Query: 186 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgt 120
Query: 246 cctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgacagcaa 305
||||||||||| ||||||||||||||||| || || || ||||||||||||||||||||
Sbjct: 121 gctccgcgaggcgaggaggatcatccaggactcggagataatgaaggaggacgacagcaa 180
Query: 306 ctggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggcaacgaaca 365
|||||| |||||||||||| ||||| | |||||||||||||| |||||||||||||| ||
Sbjct: 181 ctggccggagcccgaccgcgtcggcaggcaggagctcgagattgtcatgggcaacgagca 240
Query: 366 catttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggaccc 425
||| || |||||||| |||||||||||||||||||| || |||||| |||||||||||||
Sbjct: 241 catctccttcaccacctccaagatcggctccctcgttgacgtccagaccagcaaggaccc 300
Query: 426 ggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtgttttcact 485
|||||| ||||| ||||||||||||||||||||||| || || || ||||||||||||||
Sbjct: 301 ggagggcctccgcatcttctactacctcgtccaggaccttaaatgtttcgtgttttcact 360
Query: 486 catcaacctccacttcaagatcaagcc 512
|||||||||||||| |||||||||||
Sbjct: 361 tatcaacctccactttaagatcaagcc 387
>gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085J23f, mRNA sequence
Length = 896
Score = 440 bits (222), Expect = e-122
Identities = 378/426 (88%), Gaps = 3/426 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 20 agttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgagt 79
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 139
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||| ||||||||| || |||||||| |||| |||||
Sbjct: 140 ccatgatccgcaaggaggtcttcgtcttcccctccgtgcttcgcgaggcgaggaagatca 199
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||| | || || |||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 200 tccaggacttcggaattatgaaggaggacgacagcaactggccggagccccaccgcgtcg 259
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|| | ||||||| ||||| ||||||||| |||| |||||||| |||||||| |||||||
Sbjct: 260 gcaggcaggagcctgagattgtcatgggccacgagcacatttccttcaccacctccaaga 319
Query: 389 tcggctccctcgtcgatgtccagtccagcaagg-acccggagggactccggatcttctac 447
||||||||| || |||||| ||||| ||| | |||||||| ||||| |||||||||
Sbjct: 320 atcgctccctcggtgacgtccagaccagccaggaaaccggagggcctccgcatcttctac 379
Query: 448 ta-cctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagat 506
|| ||||| |||||| | || | |||||| ||||||| |||||||||| ||| |||||
Sbjct: 380 taccctcg-ccaggaccctaaaagtttcgtggtttcacttatcaacctcccctttaagat 438
Query: 507 caagcc 512
||||||
Sbjct: 439 caagcc 444
>gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09u 3',
mRNA sequence
Length = 478
Score = 291 bits (147), Expect = 2e-077
Identities = 207/227 (91%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||
Sbjct: 454 atgaaggaggacgacagcaactggccggagcccgaccgcgtcggcaggcaggagctcgag 395
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| |||||||||||||| ||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 394 attgtcatgggcaacgagcacatctccttcaccacctccaagatcggctccctcgttgac 335
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 334 gtccagaccagcaaggacccggagggcctccgcatcttctactacctcgtccaggacctt 275
Query: 466 aagtgcttcgtgttttcactcatcaacctccacttcaagatcaagcc 512
|| || |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 274 aaatgtttcgtgttttcacttatcaacctccactttaagatcaagcc 228
>gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
5-PRIME, mRNA sequence
Length = 398
Score = 224 bits (113), Expect = 4e-057
Identities = 161/177 (90%)
Strand = Plus / Plus
Query: 336 ggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctc 395
|||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct: 11 ggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaagatcggctc 70
Query: 396 cctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctactacctcgt 455
|||||| || |||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 71 cctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctactacctcgt 130
Query: 456 ccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagcc 512
|||||| || || || |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 131 ccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatcaagcc 187
>gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
3-PRIME, mRNA sequence
Length = 398
Score = 224 bits (113), Expect = 4e-057
Identities = 161/177 (90%)
Strand = Plus / Minus
Query: 336 ggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctc 395
|||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct: 388 ggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaagatcggctc 329
Query: 396 cctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctactacctcgt 455
|||||| || |||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 328 cctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctactacctcgt 269
Query: 456 ccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagcc 512
|||||| || || || |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 268 ccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatcaagcc 212
>gb|AV833948.1|AV833948 AV833948 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags17g23, mRNA sequence
Length = 99
Score = 52.0 bits (26), Expect = 3e-005
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 473 tcgtgttttcactcatcaacctccacttcaagatcaagcc 512
||||||||||||| ||||||| |||||| |||||| ||||
Sbjct: 99 tcgtgttttcacttatcaaccnccactttaagatcnagcc 60
>gb|AV833749.1|AV833749 AV833749 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags17g23, mRNA sequence
Length = 34
Score = 48.1 bits (24), Expect = 5e-004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 290 aggaggacgacagcaactggcctgagcccgaccg 323
|||||||||||||||||||||| | ||||||||
Sbjct: 1 aggaggacgacagcaactggccgnancccgaccg 34
>gb|BE421665.1|BE421665 HWM012cE.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM012cE.09, mRNA sequence
Length = 983
Score = 42.1 bits (21), Expect = 0.033
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagcc 21
|||||||||||||||||||||
Sbjct: 108 aattcggcacgaggggaagcc 128
>gb|BE422074.1|BE422074 HWM019cF.08r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM019cF.08, mRNA sequence
Length = 1613
Score = 42.1 bits (21), Expect = 0.033
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagcc 21
|||||||||||||||||||||
Sbjct: 116 aattcggcacgaggggaagcc 136
>gb|BM816682.1|BM816682 HC114F05_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114F05_SK.ab1 similar to chymotrypsin inhibitor 1b -
Barley,hypothetical protein [Oryza sativa], mRNA
sequence
Length = 918
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 14 aattcggcacgaggggaagc 33
>gb|BJ447329.1|BJ447329 BJ447329 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14p14 5', mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 8 aattcggcacgaggggaagc 27
>gb|BJ462997.1|BJ462997 BJ462997 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25e24 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 6 aattcggcacgaggggaagc 25
>gb|CA030817.1|CA030817 HX08D11r HX Hordeum vulgare subsp. vulgare cDNA clone HX08D11
5-PRIME, mRNA sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 5 aattcggcacgaggggaagc 24
>gb|BJ547926.1|BJ547926 BJ547926 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41n02 5', mRNA sequence
Length = 704
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 attcggcacgaggggaagcc 21
||||||||||||||||||||
Sbjct: 1 attcggcacgaggggaagcc 20
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,612
Number of Sequences: 312970
Number of extensions: 125612
Number of successful extensions: 45597
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45567
Number of HSP's gapped (non-prelim): 29
length of query: 964
length of database: 175,134,539
effective HSP length: 19
effective length of query: 945
effective length of database: 169,188,109
effective search space: 159882763005
effective search space used: 159882763005
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)