BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke devel... 581 e-164
gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm libra... 581 e-164
gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no... 573 e-162
gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedl... 555 e-157
gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, wat... 541 e-152
gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgar... 529 e-149
gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 ... 416 e-115
gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke devel... 283 4e-075
gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. v... 216 8e-055
gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. v... 216 8e-055
gb|AV833749.1|AV833749 AV833749 K. Sato unpublished cDNA li... 48 4e-004
gb|BI954212.1|BI954212 HVSMEm0016K03f Hordeum vulgare green... 42 0.024
gb|BU981006.1|BU981006 HA22F18r HA Hordeum vulgare subsp. v... 42 0.024
gb|BG344184.1|BG344184 HVSMEg0007P23f Hordeum vulgare pre-a... 40 0.097
gb|CA003256.1|CA003256 HS09O01r HS Hordeum vulgare subsp. v... 40 0.097
gb|AL502122.1|AL502122 AL502122 Hordeum vulgare Barke roots... 38 0.38
gb|AL506393.1|AL506393 AL506393 Hordeum vulgare Barke devel... 38 0.38
gb|AL506482.1|AL506482 AL506482 Hordeum vulgare Barke devel... 38 0.38
gb|AL508333.1|AL508333 AL508333 Hordeum vulgare Barke devel... 38 0.38
gb|BF629333.2|BF629333 HVSMEb0010N19f Hordeum vulgare seedl... 38 0.38
gb|BF253537.2|BF253537 HVSMEf0001D08f Hordeum vulgare seedl... 38 0.38
gb|BF256447.2|BF256447 HVSMEf0009P21f Hordeum vulgare seedl... 38 0.38
gb|BI947615.1|BI947615 HVSMEl0006B16f Hordeum vulgare spike... 38 0.38
gb|BI951605.1|BI951605 HVSMEm0001J20f Hordeum vulgare green... 38 0.38
gb|BE215430.2|BE215430 HV_CEb0006M11f Hordeum vulgare seedl... 38 0.38
gb|BE559350.3|BE559350 HV_CEb0024D19f Hordeum vulgare seedl... 38 0.38
gb|BQ458446.1|BQ458446 HA05D05r HA Hordeum vulgare subsp. v... 38 0.38
gb|BQ466881.1|BQ466881 HS01O03T HS Hordeum vulgare subsp. v... 38 0.38
gb|BQ467174.1|BQ467174 HS02O03r HS Hordeum vulgare subsp. v... 38 0.38
gb|BI776261.2|BI776261 EBem04_SQ001_E04_R embryo, 12 DPA, n... 38 0.38
gb|BM369368.2|BM369368 EBem07_SQ003_G06_R embryo, 28 DPA, n... 38 0.38
gb|BQ765574.1|BQ765574 EBro03_SQ007_F18_R root, 3 week, wat... 38 0.38
gb|BQ767127.1|BQ767127 EBro08_SQ008_E04_R root, 3 week, dro... 38 0.38
gb|BU996261.1|BU996261 HM13A19r HM Hordeum vulgare subsp. v... 38 0.38
gb|CA006929.1|CA006929 HU06C07r HU Hordeum vulgare subsp. v... 38 0.38
gb|CB883816.1|CB883816 HA20L04r HA Hordeum vulgare subsp. v... 38 0.38
gb|CB883827.1|CB883827 HA23P15r HA Hordeum vulgare subsp. v... 38 0.38
gb|CB883833.1|CB883833 HA24K16r HA Hordeum vulgare subsp. v... 38 0.38
>gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09T 5',
mRNA sequence
Length = 700
Score = 581 bits (293), Expect = e-164
Identities = 392/425 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 115 gagttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgag 174
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 234
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 235 accatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatc 294
Query: 250 atccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatc 309
|||||||| || || || |||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 295 atccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtc 354
Query: 310 ggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaag 369
||| | |||||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 355 ggcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaag 414
Query: 370 atcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctac 429
|||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 415 atcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctac 474
Query: 430 taccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatc 489
||||| |||||||| || || ||||||||||| || || |||||||| ||||| ||||||
Sbjct: 475 tacctcgtccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatc 534
Query: 490 aagcc 494
|||||
Sbjct: 535 aagcc 539
>gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL62h11 5' similar to mago
nashi-like protein, mRNA sequence
Length = 554
Score = 581 bits (293), Expect = e-164
Identities = 392/425 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 91 gagttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgag 150
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 210
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 211 accatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatc 270
Query: 250 atccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatc 309
|||||||| || || || |||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 271 atccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtc 330
Query: 310 ggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaag 369
||| | |||||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 331 ggcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaag 390
Query: 370 atcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctac 429
|||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 391 atcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctac 450
Query: 430 taccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatc 489
||||| |||||||| || || ||||||||||| || || |||||||| ||||| ||||||
Sbjct: 451 tacctcgtccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatc 510
Query: 490 aagcc 494
|||||
Sbjct: 511 aagcc 515
>gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G09 5', mRNA sequence
Length = 540
Score = 573 bits (289), Expect = e-162
Identities = 391/425 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 93 gagttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgag 152
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 212
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 213 accatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatc 272
Query: 250 atccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatc 309
|||||||| || || || |||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 273 atccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtc 332
Query: 310 ggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaag 369
||| | |||||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 333 ggcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaag 392
Query: 370 atcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctac 429
|||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 393 atcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctac 452
Query: 430 taccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatc 489
||||| || ||||| || || ||||||||||| || || |||||||| ||||| ||||||
Sbjct: 453 tacctcgtgcaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatc 512
Query: 490 aagcc 494
|||||
Sbjct: 513 aagcc 517
>gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006F16f, mRNA sequence
Length = 473
Score = 555 bits (280), Expect = e-157
Identities = 364/392 (92%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 73 gagttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgag 132
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 192
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 193 accatgatccgcaaggaggtcttcgtctccccctccgtgctccgcgaggcgaggaggatc 252
Query: 250 atccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatc 309
|||||||| || || || |||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 253 atccaggactcggagataatgaaggaggacgacagcaactggccggagcccgaccgcgtc 312
Query: 310 ggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaag 369
||| | |||||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 313 ggcaggcaggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaag 372
Query: 370 atcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctac 429
|||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 373 atcggctccctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctac 432
Query: 430 taccttgtccaggatctgaagtgtttcgtgtt 461
||||| |||||||| || || |||||||||||
Sbjct: 433 tacctcgtccaggaccttaaatgtttcgtgtt 464
>gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J16 5', mRNA sequence
Length = 544
Score = 541 bits (273), Expect = e-152
Identities = 363/393 (92%)
Strand = Plus / Plus
Query: 102 gggcaagttcgggcacgagttcctcgagttcgagctccgccccgacggcaagctccgcta 161
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gggcaagttcggccacgagttcctcgagttcgagttccgccccgacggcaagctccgcta 60
Query: 162 cgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcgcc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 61 cgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcccc 120
Query: 222 ctccgtcctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggacga 281
|||||| ||||||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 121 ctccgtgctccgcgaggcgaggaggatcatccaggactcggagataatgaaggaggacga 180
Query: 282 cagcaactggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaa 341
|||||||||||| |||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 181 cagcaactggccggagcccgaccgcgtcggcaggcaggagctcgagattgtcatgggcaa 240
Query: 342 cgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaa 401
||||||||| || |||||||| |||||||||||||||||||| || |||||| |||||||
Sbjct: 241 cgagcacatctccttcaccacctccaagatcggctccctcgttgacgtccagaccagcaa 300
Query: 402 ggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgtt 461
|||||||||||||||||| |||||||||||||| |||||||| || || |||||||||||
Sbjct: 301 ggacccggagggcctccgcatcttctactacctcgtccaggaccttaaatgtttcgtgtt 360
Query: 462 ctcgctcatcaaccttcacttcaagatcaagcc 494
|| || |||||||| ||||| |||||||||||
Sbjct: 361 ttcacttatcaacctccactttaagatcaagcc 393
>gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A192 5-PRIME, mRNA sequence
Length = 588
Score = 529 bits (267), Expect = e-149
Identities = 357/387 (92%)
Strand = Plus / Plus
Query: 108 gttcgggcacgagttcctcgagttcgagctccgccccgacggcaagctccgctacgccaa 167
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gttcggccacgagttcctcgagttcgagttccgccccgacggcaagctccgctacgccaa 60
Query: 168 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctcgccctccgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 caactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgt 120
Query: 228 cctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagcaa 287
||||||||||| ||||||||||||||||| || || || ||||||||||||||||||||
Sbjct: 121 gctccgcgaggcgaggaggatcatccaggactcggagataatgaaggaggacgacagcaa 180
Query: 288 ctggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagca 347
|||||| |||||||||||| ||||| | |||||||||||||| |||||||||||||||||
Sbjct: 181 ctggccggagcccgaccgcgtcggcaggcaggagctcgagattgtcatgggcaacgagca 240
Query: 348 catttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggaccc 407
||| || |||||||| |||||||||||||||||||| || |||||| |||||||||||||
Sbjct: 241 catctccttcaccacctccaagatcggctccctcgttgacgtccagaccagcaaggaccc 300
Query: 408 ggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgct 467
|||||||||||| |||||||||||||| |||||||| || || ||||||||||| || ||
Sbjct: 301 ggagggcctccgcatcttctactacctcgtccaggaccttaaatgtttcgtgttttcact 360
Query: 468 catcaaccttcacttcaagatcaagcc 494
|||||||| ||||| |||||||||||
Sbjct: 361 tatcaacctccactttaagatcaagcc 387
>gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085J23f, mRNA sequence
Length = 896
Score = 416 bits (210), Expect = e-115
Identities = 373/426 (87%), Gaps = 1/426 (0%)
Strand = Plus / Plus
Query: 70 gagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgag 129
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 19 gagttctacctacggtactacgtggggcacaagggcaagttcggccacgagttcctcgag 78
Query: 130 ttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgac 138
Query: 190 accatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatc 249
|||||||||||||||||||||||||||| |||||||| || |||||||| |||| ||||
Sbjct: 139 accatgatccgcaaggaggtcttcgtcttcccctccgtgcttcgcgaggcgaggaagatc 198
Query: 250 atccaggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatc 309
|||||||| | || || |||||||||||||||||||||||||| |||||| ||||| ||
Sbjct: 199 atccaggacttcggaattatgaaggaggacgacagcaactggccggagccccaccgcgtc 258
Query: 310 ggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaag 369
||| | ||||||| ||||| ||||||||| ||||||||||||| |||||||| ||||||
Sbjct: 259 ggcaggcaggagcctgagattgtcatgggccacgagcacatttccttcaccacctccaag 318
Query: 370 atcggctccctcgtcgatgtccagtccagcaagg-acccggagggcctccggatcttcta 428
| ||||||||| || |||||| ||||| ||| | |||||||||||||| ||||||||
Sbjct: 319 aatcgctccctcggtgacgtccagaccagccaggaaaccggagggcctccgcatcttcta 378
Query: 429 ctaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagat 488
||||| | |||||| | || |||||||| | || || |||||||| | ||| |||||
Sbjct: 379 ctaccctcgccaggaccctaaaagtttcgtggtttcacttatcaacctcccctttaagat 438
Query: 489 caagcc 494
||||||
Sbjct: 439 caagcc 444
>gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09u 3',
mRNA sequence
Length = 478
Score = 283 bits (143), Expect = 4e-075
Identities = 206/227 (90%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||
Sbjct: 454 atgaaggaggacgacagcaactggccggagcccgaccgcgtcggcaggcaggagctcgag 395
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| |||||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 394 attgtcatgggcaacgagcacatctccttcaccacctccaagatcggctccctcgttgac 335
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct: 334 gtccagaccagcaaggacccggagggcctccgcatcttctactacctcgtccaggacctt 275
Query: 448 aagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagcc 494
|| ||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 274 aaatgtttcgtgttttcacttatcaacctccactttaagatcaagcc 228
>gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
5-PRIME, mRNA sequence
Length = 398
Score = 216 bits (109), Expect = 8e-055
Identities = 160/177 (90%)
Strand = Plus / Plus
Query: 318 ggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctc 377
|||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 11 ggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaagatcggctc 70
Query: 378 cctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactaccttgt 437
|||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 71 cctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctactacctcgt 130
Query: 438 ccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagcc 494
|||||| || || ||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 131 ccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatcaagcc 187
>gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
3-PRIME, mRNA sequence
Length = 398
Score = 216 bits (109), Expect = 8e-055
Identities = 160/177 (90%)
Strand = Plus / Minus
Query: 318 ggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctc 377
|||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 388 ggagctcgagattgtcatgggcaacgagcacatctccttcaccacctccaagatcggctc 329
Query: 378 cctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactaccttgt 437
|||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 328 cctcgttgacgtccagaccagcaaggacccggagggcctccgcatcttctactacctcgt 269
Query: 438 ccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagcc 494
|||||| || || ||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 268 ccaggaccttaaatgtttcgtgttttcacttatcaacctccactttaagatcaagcc 212
>gb|AV833749.1|AV833749 AV833749 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags17g23, mRNA sequence
Length = 34
Score = 48.1 bits (24), Expect = 4e-004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 272 aggaggacgacagcaactggcccgagcccgaccg 305
|||||||||||||||||||||| | ||||||||
Sbjct: 1 aggaggacgacagcaactggccgnancccgaccg 34
>gb|BI954212.1|BI954212 HVSMEm0016K03f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016K03f, mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.024
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 48 cggcgctggcgagggcgagggcgag 72
|||||| ||||||||||||||||||
Sbjct: 90 cggcgccggcgagggcgagggcgag 66
>gb|BU981006.1|BU981006 HA22F18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22F18
5-PRIME, mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.024
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 48 cggcgctggcgagggcgagggcgag 72
|||||| ||||||||||||||||||
Sbjct: 94 cggcgccggcgagggcgagggcgag 70
>gb|BG344184.1|BG344184 HVSMEg0007P23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007P23f, mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 23 tggcggcggccggcggcgag 42
||||||||||||||||||||
Sbjct: 29 tggcggcggccggcggcgag 10
>gb|CA003256.1|CA003256 HS09O01r HS Hordeum vulgare subsp. vulgare cDNA clone HS09O01
5-PRIME, mRNA sequence
Length = 404
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgaga 43
||||||||||||||||||||
Sbjct: 177 ggcggcggccggcggcgaga 196
>gb|AL502122.1|AL502122 AL502122 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06I23u 3', mRNA sequence
Length = 529
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 476 ggcggcggccggcggcgag 458
>gb|AL506393.1|AL506393 AL506393 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02P15T 5',
mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 36 ggcggcggccggcggcgag 54
>gb|AL506482.1|AL506482 AL506482 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03E16T 5',
mRNA sequence
Length = 533
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 95 ggcggcggccggcggcgag 113
>gb|AL508333.1|AL508333 AL508333 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08H06V 5',
mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 40 ggcggcggccggcggcgag 58
>gb|BF629333.2|BF629333 HVSMEb0010N19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010N19f, mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 39 ggcggcggccggcggcgag 57
>gb|BF253537.2|BF253537 HVSMEf0001D08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001D08f, mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 118 ggcggcggccggcggcgag 136
>gb|BF256447.2|BF256447 HVSMEf0009P21f Hordeum vulgare seedling root EST library
HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEf0009P21f, mRNA sequence
Length = 253
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 15 ggcggcggccggcggcgag 33
>gb|BI947615.1|BI947615 HVSMEl0006B16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006B16f, mRNA sequence
Length = 804
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 149 gcaagctccgctacgccaa 167
|||||||||||||||||||
Sbjct: 716 gcaagctccgctacgccaa 698
>gb|BI951605.1|BI951605 HVSMEm0001J20f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0001J20f, mRNA sequence
Length = 860
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 394 tccagcaaggacccggagggcct 416
|||||||||||||| ||||||||
Sbjct: 291 tccagcaaggacccagagggcct 313
>gb|BE215430.2|BE215430 HV_CEb0006M11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006M11f, mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 9 ggcggcggccggcggcgag 27
>gb|BE559350.3|BE559350 HV_CEb0024D19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024D19f, mRNA sequence
Length = 529
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 53 ggcggcggccggcggcgag 71
>gb|BQ458446.1|BQ458446 HA05D05r HA Hordeum vulgare subsp. vulgare cDNA clone HA05D05
5-PRIME, mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 46 ggcggcggccggcggcgag 64
>gb|BQ466881.1|BQ466881 HS01O03T HS Hordeum vulgare subsp. vulgare cDNA clone HS01O03
5-PRIME, mRNA sequence
Length = 662
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 48 ggcggcggccggcggcgag 30
>gb|BQ467174.1|BQ467174 HS02O03r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O03
5-PRIME, mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 48 ggcggcggccggcggcgag 30
>gb|BI776261.2|BI776261 EBem04_SQ001_E04_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_E04 5', mRNA sequence
Length = 504
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 3 ggcggcggccggcggcgag 21
>gb|BM369368.2|BM369368 EBem07_SQ003_G06_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_G06 5', mRNA sequence
Length = 404
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 36 ggcggcggccggcggcgag 54
>gb|BQ765574.1|BQ765574 EBro03_SQ007_F18_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_F18 5', mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 55 ggcggcggccggcggcgag 37
>gb|BQ767127.1|BQ767127 EBro08_SQ008_E04_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_E04 5', mRNA sequence
Length = 365
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 32 ggcggcggccggcggcgag 50
>gb|BU996261.1|BU996261 HM13A19r HM Hordeum vulgare subsp. vulgare cDNA clone HM13A19
5-PRIME, mRNA sequence
Length = 631
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 64 ggcggcggccggcggcgag 82
>gb|CA006929.1|CA006929 HU06C07r HU Hordeum vulgare subsp. vulgare cDNA clone HU06C07
5-PRIME, mRNA sequence
Length = 462
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 120 ggcggcggccggcggcgag 102
>gb|CB883816.1|CB883816 HA20L04r HA Hordeum vulgare subsp. vulgare cDNA clone HA20L04
5-PRIME, mRNA sequence
Length = 535
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 61 ggcggcggccggcggcgag 79
>gb|CB883827.1|CB883827 HA23P15r HA Hordeum vulgare subsp. vulgare cDNA clone HA23P15
5-PRIME, mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 46 ggcggcggccggcggcgag 64
>gb|CB883833.1|CB883833 HA24K16r HA Hordeum vulgare subsp. vulgare cDNA clone HA24K16
5-PRIME, mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgag 42
|||||||||||||||||||
Sbjct: 46 ggcggcggccggcggcgag 64
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,560
Number of Sequences: 312970
Number of extensions: 108560
Number of successful extensions: 37262
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37192
Number of HSP's gapped (non-prelim): 66
length of query: 712
length of database: 175,134,539
effective HSP length: 19
effective length of query: 693
effective length of database: 169,188,109
effective search space: 117247359537
effective search space used: 117247359537
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)