BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 96 2e-018
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 96 2e-018
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 96 2e-018
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 96 2e-018
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 96 2e-018
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 96 2e-018
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 96 2e-018
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 96 2e-018
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 96 2e-018
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 88 4e-016
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 80 1e-013
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 80 1e-013
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 80 1e-013
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 80 1e-013
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 80 1e-013
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 80 1e-013
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 80 1e-013
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 80 1e-013
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 80 1e-013
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 80 1e-013
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 80 1e-013
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 80 1e-013
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 80 1e-013
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 80 1e-013
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 80 1e-013
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 80 1e-013
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 80 1e-013
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 80 1e-013
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 80 1e-013
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 80 1e-013
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 74 7e-012
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 72 3e-011
gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA li... 68 4e-010
gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA li... 68 4e-010
gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA li... 68 4e-010
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 68 4e-010
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 68 4e-010
gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA li... 64 6e-009
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 60 1e-007
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 60 1e-007
gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, wat... 60 1e-007
gb|BU996532.1|BU996532 HM13O16r HM Hordeum vulgare subsp. v... 60 1e-007
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 58 4e-007
gb|BM815945.1|BM815945 HC105B07_T3.ab1 HC Hordeum vulgare s... 56 2e-006
gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots... 54 6e-006
gb|AV931127.1|AV931127 AV931127 K. Sato unpublished cDNA li... 54 6e-006
gb|BI779456.2|BI779456 EBro01_SQ004_B14_R root, 3 week, hyd... 54 6e-006
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 46 0.001
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 46 0.001
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 46 0.001
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 46 0.001
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 46 0.001
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 46 0.001
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 46 0.001
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 46 0.001
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 46 0.001
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 46 0.001
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 46 0.001
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 46 0.001
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 46 0.001
gb|BG299430.2|BG299430 HVSMEa0019P14f Hordeum vulgare seedl... 44 0.006
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 38 0.36
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 38 0.36
gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex B... 38 0.36
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 111 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 170
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 171 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 230
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 231 gctcctgtgggt 242
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 252 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 311
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 312 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 371
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 372 gctcctgtgggt 383
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 274 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 333
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 334 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 393
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 394 gctcctgtgggt 405
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 220 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 279
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 280 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 339
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 340 gctcctgtgggt 351
>gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 5', mRNA sequence
Length = 522
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 14 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 73
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 74 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 133
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 134 gctcctgtgggt 145
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 223 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 282
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 283 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 342
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 343 gctcctgtgggt 354
>gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16h09 5', mRNA sequence
Length = 633
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 5 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 64
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 65 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 124
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 125 gctcctgtgggt 136
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 498 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 557
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 558 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 617
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 618 gctcctgtgggt 629
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 95.6 bits (48), Expect = 2e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 296 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 355
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||||
Sbjct: 356 gcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctc 415
Query: 126 actcctttgggt 137
||||| |||||
Sbjct: 416 gctcctgtgggt 427
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 87.7 bits (44), Expect = 4e-016
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||||| | || ||
Sbjct: 367 cttctttgccttctgggtgattgttcacttataccccttcctcaagggttttatgggcag 308
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 307 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 248
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 531 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 472
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 471 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 412
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 303 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 362
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 363 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 422
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 302 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 361
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 362 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 421
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 484 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 543
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 544 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 603
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 493 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 434
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 433 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 374
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 453 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 394
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 393 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 334
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 510 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 451
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 450 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 391
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 510 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 451
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 450 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 391
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 491 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 550
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 551 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 610
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 376 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 317
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 316 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 257
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 510 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 451
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 450 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 391
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 496 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 437
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 436 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 377
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 444 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 503
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 504 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 563
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 469 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 410
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 409 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 350
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 301 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 360
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 361 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 420
>gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
3-PRIME, mRNA sequence
Length = 533
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 530 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 471
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 470 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 411
>gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_K11 5', mRNA sequence
Length = 606
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 63 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 122
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 123 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 182
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 91 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 150
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 151 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 210
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 323 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 382
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 383 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 442
>gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. vulgare cDNA clone HV12L21
3-PRIME, mRNA sequence
Length = 515
Score = 79.8 bits (40), Expect = 1e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 494 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 435
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 434 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 375
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 73.8 bits (37), Expect = 7e-012
Identities = 99/120 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || |
Sbjct: 682 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcan 741
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 742 gcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 801
>gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L01f, mRNA sequence
Length = 500
Score = 71.9 bits (36), Expect = 3e-011
Identities = 99/120 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || |||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 29 cttctttgccttctgggtgattgctcacttataccccttcctcaagggtcttatgggcag 88
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||| | |||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 89 gcaaaaccgcacaccgactattgtcatcgtctgggctgtcctactggcttcaatcttctc 148
>gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4m03 5', mRNA sequence
Length = 239
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 64 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 123
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||
Sbjct: 18 aggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatc 77
Query: 124 tcactcctttgggt 137
|| ||||| |||||
Sbjct: 78 tcgctcctgtgggt 91
>gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 3', mRNA sequence
Length = 607
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 64 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 123
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||
Sbjct: 605 aggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatc 546
Query: 124 tcactcctttgggt 137
|| ||||| |||||
Sbjct: 545 tcgctcctgtgggt 532
>gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 3', mRNA sequence
Length = 683
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 64 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 123
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||
Sbjct: 678 aggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatc 619
Query: 124 tcactcctttgggt 137
|| ||||| |||||
Sbjct: 618 tcgctcctgtgggt 605
>gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
3-PRIME, mRNA sequence
Length = 514
Score = 67.9 bits (34), Expect = 4e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 40 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 99
||||||||||| ||| | | || ||||||||| | |||||||| |||||||||||||||
Sbjct: 496 cccttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgg 437
Query: 100 tccatcctgctggcttcaatcttctc 125
| |||| |||||||||||||||||
Sbjct: 436 gctgtcctcctggcttcaatcttctc 411
>gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. vulgare cDNA clone HV11G20
3-PRIME, mRNA sequence
Length = 469
Score = 67.9 bits (34), Expect = 4e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 40 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 99
||||||||||| ||| | | || ||||||||| | |||||||| |||||||||||||||
Sbjct: 460 cccttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgg 401
Query: 100 tccatcctgctggcttcaatcttctc 125
| |||| |||||||||||||||||
Sbjct: 400 gctgtcctcctggcttcaatcttctc 375
>gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40k14 5', mRNA sequence
Length = 551
Score = 63.9 bits (32), Expect = 6e-009
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
|||||||| ||||| || || |||||||||||||||||| ||||||| ||| |||| |||
Sbjct: 38 aacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctcgctc 97
Query: 130 ctttgggt 137
|| |||||
Sbjct: 98 ctgtgggt 105
>gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019M06f, mRNA sequence
Length = 526
Score = 60.0 bits (30), Expect = 1e-007
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 20 gggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacac 79
|||||||||| |||||| | || ||||||| ||| || | || ||||| |||||||| |
Sbjct: 2 gggtgattgttcatctgcacccgttcctcacgggtctgttgggaaggcagaacaggaccc 61
Query: 80 cgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
|||| || || ||||||||||||||||| |||||| ||| |||| ||||| |||||
Sbjct: 62 cgacgatcgtgatcgtctggtccatcctaggggcttcgatcatctcgctcctgtgggt 119
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 60.0 bits (30), Expect = 1e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||| || ||||||||||| || | || ||||||||||| ||| | | || ||
Sbjct: 483 cttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatgggcag 542
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctgg 99
||||||| | |||||||| |||||||||||||||
Sbjct: 543 gcaaaaccgcacaccgacgattgtcatcgtctgg 576
>gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_G08 5', mRNA sequence
Length = 463
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 5 acaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 54
>gb|BU996532.1|BU996532 HM13O16r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O16
5-PRIME, mRNA sequence
Length = 471
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||| ||||||||||||||| | |||| |||||||||||||||||
Sbjct: 12 acaccgacgattgtcatcgtctgggctgtcctcctggcttcaatcttctc 61
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 58.0 bits (29), Expect = 4e-007
Identities = 94/113 (83%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || ||||||||||| |||||||| || |||||||| ||| || | || ||
Sbjct: 290 cttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttgggaag 231
Query: 66 gcaaaacaggacaccgacaattgtcatcgt-ctggtccat-cctgctggcttc 116
||| |||||||| ||||| || || ||||| ||||||||| |||| |||||||
Sbjct: 230 gcagaacaggaccccgacgatcgtgatcgtnctggtccatncctgttggcttc 178
>gb|BM815945.1|BM815945 HC105B07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105B07_T3.ab1 similar to cellulose synthase-6 [Zea
mays],cellulose synthase-7 [Zea mays],cellulose
synthase-8 [Zea mays],cellulose synthase catalytic
subunit-like protein [Arabidopsis thaliana],putative
cellulose synthase catalytic subunit [Arabidopsis
thaliana], mRNA sequence
Length = 898
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 74 ggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactccttt 133
|||| ||||| || || |||||||||||||||||| ||||||| ||| |||| ||||| |
Sbjct: 34 ggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatctcgctcctgt 93
Query: 134 gggt 137
||||
Sbjct: 94 gggt 97
>gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05D18u 3', mRNA sequence
Length = 530
Score = 54.0 bits (27), Expect = 6e-006
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 40 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgt-catcgtctg 98
||||||||||| ||| | | || ||||||||| | |||||||| ||||| |||||||||
Sbjct: 511 cccttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtccatcgtctg 452
Query: 99 gtccatcctgctggcttcaatcttctc 125
| | |||| |||||||||||||||||
Sbjct: 451 ggctgtcctcctggcttcaatcttctc 425
>gb|AV931127.1|AV931127 AV931127 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18j24 3', mRNA sequence
Length = 661
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 91 atcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
|||||||||||||||||| ||||||| ||| |||| ||||| |||||
Sbjct: 646 atcgtctggtccatcctgttggcttcgatcatctcgctcctgtgggt 600
>gb|BI779456.2|BI779456 EBro01_SQ004_B14_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_B14 5', mRNA sequence
Length = 637
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 91 atcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
|||||||||||||||||| ||||||| ||| |||| ||||| |||||
Sbjct: 12 atcgtctggtccatcctgttggcttcgatcatctcgctcctgtgggt 58
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.001
Identities = 95/119 (79%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| ||||||| || ||||||||||| ||| | | |||| ||| ||| | ||
Sbjct: 520 tgggtgatcctccatctctaccccttcctcaagggtctcatggggaagcagaaccgcacg 461
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
||||| || |||||||| ||||| ||||| || || || |||||||| ||||| |||||
Sbjct: 460 ccgaccatcgtcatcgtttggtcgatcctcctcgcctccatcttctccctcctctgggt 402
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.001
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| ||||||| || ||||||||||| ||| | | |||| ||| ||| | ||
Sbjct: 462 tgggtgatcctccatctctaccccttcctcaagggtctcatggggaagcagaaccgcacg 521
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
||||| || |||||||| ||||| ||||| || || || |||||||| ||||| |||||
Sbjct: 522 ccgaccatcgtcatcgtttggtcgatcctcctcgcctccatcttctccctcctctgggt 580
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 46.1 bits (23), Expect = 0.001
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| ||||||| || ||||||||||| ||| | | |||| ||| ||| | ||
Sbjct: 106 tgggtgatcctccatctctaccccttcctcaagggtctcatggggaagcagaaccgcacg 165
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
||||| || |||||||| ||||| ||||| || || || |||||||| ||||| |||||
Sbjct: 166 ccgaccatcgtcatcgtttggtcgatcctcctcgcctccatcttctccctcctctgggt 224
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,559
Number of Sequences: 312970
Number of extensions: 50559
Number of successful extensions: 13473
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 13382
Number of HSP's gapped (non-prelim): 101
length of query: 671
length of database: 175,134,539
effective HSP length: 19
effective length of query: 652
effective length of database: 169,188,109
effective search space: 110310647068
effective search space used: 110310647068
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)