BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.2
(4065 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. v... 678 0.0
gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots... 632 e-179
gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. v... 618 e-175
gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedl... 599 e-169
gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hyd... 599 e-169
gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-a... 595 e-168
gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. v... 589 e-166
gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedl... 565 e-159
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 553 e-155
gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. v... 525 e-147
gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. v... 523 e-146
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 504 e-140
gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. v... 484 e-134
gb|CA020497.1|CA020497 HZ36H21r HZ Hordeum vulgare subsp. v... 474 e-131
gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA,... 464 e-128
gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots... 450 e-124
gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA li... 444 e-122
gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. v... 428 e-118
gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA li... 424 e-116
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 402 e-110
gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, wat... 396 e-108
gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. v... 339 4e-091
gb|AV836609.1|AV836609 AV836609 K. Sato unpublished cDNA li... 331 1e-088
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 317 2e-084
gb|BQ469880.1|BQ469880 HX01C05T HX Hordeum vulgare subsp. v... 305 6e-081
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 272 9e-071
gb|BI957138.1|BI957138 HVSMEn0007L07f Hordeum vulgare rachi... 270 3e-070
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 270 3e-070
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 266 5e-069
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 260 3e-067
gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA li... 260 3e-067
gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. v... 260 3e-067
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 258 1e-066
gb|BG366351.1|BG366351 HVSMEi0006M09f Hordeum vulgare 20 DA... 222 7e-056
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 155 1e-035
gb|CA027985.1|CA027985 HZ60K07r HZ Hordeum vulgare subsp. v... 135 1e-029
gb|AL504419.1|AL504419 AL504419 Hordeum vulgare Barke roots... 129 8e-028
gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike... 129 8e-028
gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA li... 129 8e-028
gb|BU995821.1|BU995821 HM11H13r HM Hordeum vulgare subsp. v... 129 8e-028
gb|CV061189.1|CV061189 BNEL65h6 Barley EST endosperm librar... 129 8e-028
gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedl... 121 2e-025
gb|BF255020.3|BF255020 HVSMEf0005K21f Hordeum vulgare seedl... 121 2e-025
gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. v... 119 8e-025
gb|CA009005.1|CA009005 HU12N24r HU Hordeum vulgare subsp. v... 119 8e-025
gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA li... 117 3e-024
gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots... 105 1e-020
gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-a... 105 1e-020
gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike... 105 1e-020
gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedl... 105 1e-020
gb|BE214667.2|BE214667 HV_CEb0004C10f Hordeum vulgare seedl... 105 1e-020
gb|BQ463453.1|BQ463453 HI05F03r HI Hordeum vulgare subsp. v... 105 1e-020
gb|BQ472793.1|BQ472793 HB01H14r BC Hordeum vulgare subsp. v... 105 1e-020
gb|BU999035.1|BU999035 HI12P13r HI Hordeum vulgare subsp. v... 101 2e-019
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 96 1e-017
gb|BG368813.1|BG368813 HVSMEi0020M13f Hordeum vulgare 20 DA... 94 4e-017
gb|BG414971.1|BG414971 HVSMEk0004I03f Hordeum vulgare testa... 94 4e-017
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 94 4e-017
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 94 4e-017
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 94 4e-017
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 94 4e-017
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 94 4e-017
gb|BQ463573.1|BQ463573 HI05L24r HI Hordeum vulgare subsp. v... 94 4e-017
gb|BI779022.2|BI779022 EBro01_SQ002_J19_R root, 3 week, hyd... 94 4e-017
gb|BQ768380.1|BQ768380 EBro08_SQ011_E16_R root, 3 week, dro... 94 4e-017
gb|CA012990.1|CA012990 HT07B01r HT Hordeum vulgare subsp. v... 94 4e-017
gb|BG369245.1|BG369245 HVSMEi0023G07f Hordeum vulgare 20 DA... 88 3e-015
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 88 3e-015
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 86 1e-014
gb|BJ464018.1|BJ464018 BJ464018 K. Sato unpublished cDNA li... 86 1e-014
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 86 1e-014
gb|BU972673.1|BU972673 HB22G06r BC Hordeum vulgare subsp. v... 86 1e-014
gb|CA031458.1|CA031458 HX10A06r HX Hordeum vulgare subsp. v... 86 1e-014
gb|CA023762.1|CA023762 HZ47F10r HZ Hordeum vulgare subsp. v... 84 4e-014
gb|BF259426.2|BF259426 HVSMEf0019B07f Hordeum vulgare seedl... 82 2e-013
gb|BI948539.1|BI948539 HVSMEl0010A07f Hordeum vulgare spike... 82 2e-013
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 78 3e-012
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 78 3e-012
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 78 3e-012
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 78 3e-012
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 78 3e-012
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 78 3e-012
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 78 3e-012
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 78 3e-012
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 78 3e-012
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 78 3e-012
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 78 3e-012
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 78 3e-012
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 78 3e-012
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 78 3e-012
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 76 1e-011
gb|CB882157.1|CB882157 HL01A17w HL Hordeum vulgare subsp. v... 76 1e-011
gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA li... 74 4e-011
gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA li... 74 4e-011
gb|BQ464113.1|BQ464113 HF01G08T HF Hordeum vulgare subsp. v... 74 4e-011
gb|BQ739972.1|BQ739972 HB107G12 HB Hordeum vulgare subsp. v... 74 4e-011
gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA li... 72 2e-010
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 72 2e-010
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 72 2e-010
gb|AV926208.1|AV926208 AV926208 K. Sato unpublished cDNA li... 72 2e-010
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 72 2e-010
gb|BU984513.1|BU984513 HF04C11r HF Hordeum vulgare subsp. v... 72 2e-010
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 72 2e-010
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 72 2e-010
gb|CA009146.1|CA009146 HU13E22r HU Hordeum vulgare subsp. v... 72 2e-010
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 72 2e-010
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 70 6e-010
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 70 6e-010
gb|AV836682.1|AV836682 AV836682 K. Sato unpublished cDNA li... 68 2e-009
gb|BF624748.2|BF624748 HVSMEa0017K05f Hordeum vulgare seedl... 68 2e-009
gb|BQ468970.1|BQ468970 HM02P11r HM Hordeum vulgare subsp. v... 68 2e-009
gb|CK124710.1|CK124710 BES1824110c01 BES1824 Hordeum vulgar... 68 2e-009
gb|BE193304.2|BE193304 HVSMEh0080I07f Hordeum vulgare 5-45 ... 66 1e-008
gb|BU968059.1|BU968059 HB06E15r BC Hordeum vulgare subsp. v... 66 1e-008
gb|CA009062.1|CA009062 HU13B03r HU Hordeum vulgare subsp. v... 66 1e-008
gb|BI956967.1|BI956967 HVSMEn0006I08f Hordeum vulgare rachi... 64 4e-008
gb|BG417165.1|BG417165 HVSMEk0016J06f Hordeum vulgare testa... 64 4e-008
gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA li... 64 4e-008
gb|AL505318.1|AL505318 AL505318 Hordeum vulgare Barke roots... 62 2e-007
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 62 2e-007
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 62 2e-007
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 62 2e-007
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 60 6e-007
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 60 6e-007
gb|BF064711.2|BF064711 HV_CEb0017G02f Hordeum vulgare seedl... 60 6e-007
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 60 6e-007
gb|BQ467842.1|BQ467842 HR01B16r HR Hordeum vulgare subsp. v... 60 6e-007
gb|BM376392.2|BM376392 EBem05_SQ002_B14_R embryo, 14 DPA, n... 60 6e-007
gb|BU985115.1|BU985115 HF06C19r HF Hordeum vulgare subsp. v... 60 6e-007
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 60 6e-007
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 60 6e-007
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 60 6e-007
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 60 6e-007
gb|BF624752.2|BF624752 HVSMEa0017K09f Hordeum vulgare seedl... 58 2e-006
gb|BF253907.1|BF253907 HVSMEf0002H08f Hordeum vulgare seedl... 58 2e-006
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 58 2e-006
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 58 2e-006
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 58 2e-006
gb|CA020225.1|CA020225 HV14L03r HV Hordeum vulgare subsp. v... 58 2e-006
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 58 2e-006
gb|BG366095.2|BG366095 HVSMEi0005L08f Hordeum vulgare 20 DA... 56 9e-006
gb|AV931127.1|AV931127 AV931127 K. Sato unpublished cDNA li... 56 9e-006
gb|BM815945.1|BM815945 HC105B07_T3.ab1 HC Hordeum vulgare s... 56 9e-006
gb|BI779456.2|BI779456 EBro01_SQ004_B14_R root, 3 week, hyd... 56 9e-006
gb|BM442929.2|BM442929 EBro02_SQ001_O08_R root, 3 week, hyd... 56 9e-006
gb|CA015150.1|CA015150 HT13H01r HT Hordeum vulgare subsp. v... 56 9e-006
gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, wat... 52 1e-004
gb|BU996532.1|BU996532 HM13O16r HM Hordeum vulgare subsp. v... 52 1e-004
gb|BG365821.2|BG365821 HVSMEi0004F18f Hordeum vulgare 20 DA... 50 6e-004
gb|BM817226.1|BM817226 HC109A10_T3.ab1 HC Hordeum vulgare s... 50 6e-004
gb|AW982533.3|AW982533 HVSMEg0003I09f Hordeum vulgare pre-a... 48 0.002
gb|BQ468579.1|BQ468579 HM01K12T HM Hordeum vulgare subsp. v... 48 0.002
gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots... 46 0.009
gb|BI958001.1|BI958001 HVSMEn0012N14f Hordeum vulgare rachi... 46 0.009
gb|BE216853.1|BE216853 HV_CEb0011N06f Hordeum vulgare seedl... 46 0.009
gb|BE455964.3|BE455964 HVSMEg0017P22f Hordeum vulgare pre-a... 46 0.009
gb|BQ767053.1|BQ767053 EBro08_SQ007_H22_R root, 3 week, dro... 46 0.009
gb|BM442942.2|BM442942 EBro02_SQ001_P12_R root, 3 week, hyd... 44 0.036
gb|BU999889.1|BU999889 HS17C12u HS Hordeum vulgare subsp. v... 44 0.036
gb|AV836233.1|AV836233 AV836233 K. Sato unpublished cDNA li... 42 0.14
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 42 0.14
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 42 0.14
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 42 0.14
>gb|CA019440.1|CA019440 HV11P23r HV Hordeum vulgare subsp. vulgare cDNA clone HV11P23
5-PRIME, mRNA sequence
Length = 619
Score = 678 bits (342), Expect = 0.0
Identities = 545/610 (89%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 2148 agggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgc 2207
||||||||| ||||| |||||||||||||| | ||||| |||||||| |||||||||||
Sbjct: 619 agggaactgcacataacaaaccttctttccgaccaaaggatccatcatgaaacacattgc 560
Query: 2208 ttcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgg 2267
|||||| | |||||||||||||| | |||||||||||||||||||| | || |||||
Sbjct: 559 ttccttgactgccttgctgttgttcacatagtgatcacaatccaagttcagcatgtatgg 500
Query: 2268 agcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttcttatg 2327
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct: 499 agcattagttagtacagcagagacccggaccaatgcgttcatagcaccagccttcttgtg 440
Query: 2328 atggttatagcctggtcgtttctctctagaaacataaaccaatcgtggcagttcatttcc 2387
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 439 atggttatagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttcc 380
Query: 2388 ctc-acagtcaaggcctccgctttggccaaggaagacctgaatcattccaggatgatcac 2446
|| ||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 379 ttccaca-tcaaggccaccactttgaccaaggaagacctgaatcattccagggtgatcac 321
Query: 2447 gaacattgtttccaggccagggggttccatcttgcattgtccatccttcttcaggaactt 2506
| ||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct: 320 ggacattgtttcctggccagggagtaccatcctgcatggtccatccttcctcaggaactt 261
Query: 2507 tctgggctttggcaactaaggcattgattctcaccttgaattcctcatactctctcttca 2566
|||||||||| ||||| || |||||||||| | ||||||||||||||||||||||||||
Sbjct: 260 tctgggctttagcaaccaaagcattgattcggatcttgaattcctcatactctctcttca 201
Query: 2567 ttgctctcctctccctaacaaagtttgctgccaccttgtctttcaagtagtctatcttct 2626
|||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 200 ttgctctcctgtccctaacaaagtttggtaccaccttgtctttcaggtagtctatcttct 141
Query: 2627 gttggaagtaccactctggagcgcgaggttcaatattgtaccgtttgcagaaaggaaccc 2686
|||| ||||||||||||||||| ||||| |||||| ||||| || |||||||||||||
Sbjct: 140 gttgaaagtaccactctggagcacgaggctcaatactgtacttcttacagaaaggaaccc 81
Query: 2687 atttctttgcaaattcagatgtttcagataatgcttcaaacgttagcattgcagcaccat 2746
|||||||||||||||||||||||||||| ||| |||| || || ||||| ||||||||||
Sbjct: 80 atttctttgcaaattcagatgtttcagacaatccttcgaatgtcagcatggcagcaccat 21
Query: 2747 catcagaaac 2756
||||||||||
Sbjct: 20 catcagaaac 11
>gb|AL503528.1|AL503528 AL503528 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02H13T 5', mRNA sequence
Length = 700
Score = 632 bits (319), Expect = e-179
Identities = 597/687 (86%), Gaps = 2/687 (0%)
Strand = Plus / Minus
Query: 1276 cagatggcaggcaatgtacagtaagccaagaggggaatagatg-tccaaggatacacga- 1333
||||| || ||||| ||||||||||||| || ||||| || | |||||||||| || |
Sbjct: 687 cagatagcgggcaacgtacagtaagccagaagtggaatggaaggtccaaggatagaccaa 628
Query: 1334 tggagttgatgtaggaaaatctttccaaaaatttcagaccgccaccatacccataccaaa 1393
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 627 tggagttgatgtaggaaaatctttccaaaaatttcagtccaccaccatacccataccaaa 568
Query: 1394 gagggcaatgattgctgaagaagatctcaatagacccaagagcccaccgaagcacctggt 1453
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 567 gagggcaatggttgctgaagaagatctcaatagacccaagagcccaccgaagaacctggt 508
Query: 1454 gaagacgatctgaaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgc 1513
|||||||||||||||||| ||||| |||||||| ||||||||| ||||||||| ||||
Sbjct: 507 taagacgatctgaaagattgagaggcgcagaacccttgaatgcaggccgtttaggaatgc 448
Query: 1514 agtaaattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaa 1573
|||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| |||||||
Sbjct: 447 agtaaattgatcgccagccatggcaatgcatcttaaacccagttaggatatcctctgtaa 388
Query: 1574 ctgatccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaac 1633
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387 ctgacccatagatccagccaatctcttttccccagtctgtcttgtcttcatagccacaac 328
Query: 1634 taatgacatgtatagcttctttcaaaagagaagcaggacttgcactcttcaaggttccac 1693
|||||||| |||||||| |||| ||||||||||||||| ||| | ||| ||||||||
Sbjct: 327 cgatgacatggatagcttccttcagaagagaagcaggactatcacacctcagggttccac 268
Query: 1694 cattctcgagaagtgtggatgtaaccaaaacagaagattggccaaatttcttttctaatt 1753
||||||| ||||||||||||| ||| ||||| | ||| |||||||||||||| |||| |
Sbjct: 267 cattctcaagaagtgtggatgcaacaaaaacggcagactggccaaatttcttctctagct 208
Query: 1754 tttgttgatttacaataccggccttttcattctcagctcctggagcagcttcgtcaattt 1813
| ||||| ||||||||||| ||||| | | | |||||||||| || ||||| |||||||
Sbjct: 207 tctgttggtttacaataccagccttctgagtttcagctcctgcggcggcttcatcaattt 148
Query: 1814 caccaagagcatatgcaggggattggttctcttctttcttgaaaaataataactttttct 1873
||| ||| || || ||||| ||||| |||||||| ||||||||||| || ||| ||||
Sbjct: 147 cactaagtgcgtacgcaggtgattgattctcttccttcttgaaaaacaacctcttcttct 88
Query: 1874 tctctgttttgggtttggtagtcttcttcttttgcttcctattgccaaagcagcaacagc 1933
| ||||| || || |||||| ||||||||| | |||||| || || |||||| ||||||
Sbjct: 87 tttctgtctttggcttggtaaccttcttcttgttcttcctgttaccgaagcagaaacagc 28
Query: 1934 aaaagcaccacttgggccagcagttgc 1960
| | |||||||| |||||||||||||
Sbjct: 27 acacacaccactttggccagcagttgc 1
>gb|BU994416.1|BU994416 HM07A02r HM Hordeum vulgare subsp. vulgare cDNA clone HM07A02
5-PRIME, mRNA sequence
Length = 619
Score = 618 bits (312), Expect = e-175
Identities = 536/608 (88%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 2038 ccaacataaattggaccctgaataccatccaaacctttcatgttgatatcaaaaaagaca 2097
|||||||| || || || ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 619 ccaacatagatggggccttgaataccatccaaacctttcatgttgatatcaaagaagacg 560
Query: 2098 acattccggttagcatatcggtcatggcgatcaatcccatcaaatctttgagggaactgt 2157
|| ||| ||| |||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 559 acgttcttgttggcatatcgatcatgacggtcaatggagtcgaatctttgagggaactgc 500
Query: 2158 acatagcaaaccttctttcctagtaaagggtccatcataaaacacattgcttcctttata 2217
||||| |||||||||||||| | ||||| |||||||| ||||||||||||||||| |
Sbjct: 499 acataacaaaccttctttccgaccaaaggatccatcatgaaacacattgcttccttgact 440
Query: 2218 gccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatggagcatttgtt 2277
|||||||||||||| | |||||||||||||||||||| | || ||||||||||| |||
Sbjct: 439 gccttgctgttgttcacatagtgatcacaatccaagttcagcatgtatggagcattagtt 380
Query: 2278 agtacagcagagactcggaccaatgcattcatagcaccagctttcttatgatggttatag 2337
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 379 agtacagcagagacccggaccaatgcgttcatagcaccagccttcttgtgatggttatag 320
Query: 2338 cctggtcgtttctctctagaaacataaaccaatcgtggcagttcatttccctc-acagtc 2396
||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| || ||| ||
Sbjct: 319 cctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttccttccaca-tc 261
Query: 2397 aaggcctccgctttggccaaggaagacctgaatcattccaggatgatcacgaacattgtt 2456
|||||| || ||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 260 aaggccaccactttgaccaaggaagacctgaatcattccagggtgatcacggacattgtt 201
Query: 2457 tccaggccagggggttccatcttgcattgtccatccttcttcaggaactttctgggcttt 2516
||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 200 tcctggccagggagtaccatcctgcatggtccatccttcctcaggaactttctgggcttt 141
Query: 2517 ggcaactaaggcattgattctcaccttgaattcctcatactctctcttcattgctctcct 2576
||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 140 agcaaccaaagcattgattcggatcttgaattcctcatactctctcttcattgctctcct 81
Query: 2577 ctccctaacaaagtttgctgccaccttgtctttcaagtagtctatcttctgttggaagta 2636
|||||||||||||||| | ||||||||||||||| ||||||||||||||||| | |||
Sbjct: 80 gtccctaacaaagtttggtaccaccttgtctttcaggtagtctatcttctgttaaaggta 21
Query: 2637 ccactctg 2644
||||||||
Sbjct: 20 ccactctg 13
>gb|BF258768.2|BF258768 HVSMEf0016K01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016K01f, mRNA sequence
Length = 588
Score = 599 bits (302), Expect = e-169
Identities = 506/574 (88%)
Strand = Plus / Minus
Query: 1243 agctctggagtgataaatttccctgtcaataaacagatggcaggcaatgtacagtaagcc 1302
|||||||||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 586 agctctggagtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagcc 527
Query: 1303 aagaggggaatagatgtccaaggatacacgatggagttgatgtaggaaaatctttccaaa 1362
| || ||||| || ||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct: 526 agaagtggaatggaggtccaaggatagacaatggagttgatgtaggaaaatctttccgaa 467
Query: 1363 aatttcagaccgccaccatacccataccaaagagggcaatgattgctgaagaagatctca 1422
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 466 aatttcagtccaccaccatacccataccaaagagggcaatggttgctgaagaagatctca 407
Query: 1423 atagacccaagagcccaccgaagcacctggtgaagacgatctgaaagattcagaggtgca 1482
||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||
Sbjct: 406 atagacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgca 347
Query: 1483 gaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaatgc 1542
||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 346 gaacccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagccatggcaatgc 287
Query: 1543 atcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctctttt 1602
||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 286 atcttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctctttt 227
Query: 1603 ccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaaga 1662
||||||||||||||||||||||| ||||||| |||||||| |||||||| |||| ||||
Sbjct: 226 ccccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaaga 167
Query: 1663 gaagcaggacttgcactcttcaaggttccaccattctcgagaagtgtggatgtaaccaaa 1722
||||||||||| ||| | ||| ||||||||||||||| ||||||||||||| ||| |||
Sbjct: 166 gaagcaggactatcacacctcagggttccaccattctcaagaagtgtggatgcaacaaaa 107
Query: 1723 acagaagattggccaaatttcttttctaatttttgttgatttacaataccggccttttca 1782
|| | ||| |||||||||||||| |||| || ||||| ||||||||||| ||||| | |
Sbjct: 106 acggcagactggccaaatttcttctctagcttctgttggtttacaataccagccttctga 47
Query: 1783 ttctcagctcctggagcagcttcgtcaatttcac 1816
| |||||||||| || ||||| ||||||||||
Sbjct: 46 gtttcagctcctgcggcggcttcatcaatttcac 13
>gb|BI779535.2|BI779535 EBro01_SQ004_F12_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_F12 5', mRNA sequence
Length = 596
Score = 599 bits (302), Expect = e-169
Identities = 516/586 (88%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 1188 cgtagcaaaaatgcagataaaaagtgacatgaaccacaggctggcaacattattcagctc 1247
|||||| ||||||||||| |||||||||||| |||| | ||||||| || | |||||
Sbjct: 588 cgtagcgaaaatgcagatgaaaagtgacatgtaccagatactggcaaggttgataagctc 529
Query: 1248 tggagtgataaatttccctgtcaataaacagatggcaggcaatgtacagtaagccaagag 1307
||||||||| || || || || || || ||||| || ||||| ||||||||||||| ||
Sbjct: 528 tggagtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagccagaag 469
Query: 1308 gggaatagatgtccaaggatacacgatggagttgatgtaggaaaatctttccaaaaattt 1367
||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 468 tggaatggaggtccaaggatagacaatggagttgatgtaggaaaatctttccaaaaattt 409
Query: 1368 cagaccgccacc-atacccataccaaagagggcaatgattgctgaagaagatctcaatag 1426
||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 408 cagtccaccacccatacccataccaaagagggcaatggttgctgaagaagatctcaatag 349
Query: 1427 acccaagagcccaccgaagcacctggtgaagacgatctgaaagattcagaggtgcagaac 1486
||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||
Sbjct: 348 acccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcgcagaac 289
Query: 1487 ctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaatgcatct 1546
| ||||||||| ||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct: 288 ccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagccatggcaatgcatct 229
Query: 1547 tgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctcttttcccc 1606
| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 228 taaacccagttaggatatcctctgtaactgacccatagatccagccaatctcttttcccc 169
Query: 1607 agtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagagaag 1666
||||||||||||||||||| ||||||| |||||||| |||||||| |||| ||||||||
Sbjct: 168 agtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagagaag 109
Query: 1667 caggacttgcactcttcaaggttccaccattctcgagaagtgtggatgtaaccaaaacag 1726
||||||| ||| | ||| ||||||||||||||| ||||||||||||| ||| ||||| |
Sbjct: 108 caggactatcacacctcagggttccaccattctcaagaagtgtggatgcaacaaaaacgg 49
Query: 1727 aagattggccaaatttcttttctaatttttgttgatttacaatacc 1772
||| |||||||||||||| |||| || ||||| |||||||||||
Sbjct: 48 cagactggccaaatttcttctctagcttctgttggtttacaatacc 3
>gb|BE060794.1|BE060794 HVSMEg0013G05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013G05f, mRNA sequence
Length = 624
Score = 595 bits (300), Expect = e-168
Identities = 518/588 (88%), Gaps = 2/588 (0%)
Strand = Plus / Minus
Query: 2236 tagtgatcacaatccaagtttaacaaatatggagcatttgttagtacagcagagactcgg 2295
|||||||||||||||||||| | || ||||||||||| |||||| |||||||||| |||
Sbjct: 593 tagtgatcacaatccaagttcagcatgtatggagcattagttagtccagcagagacccgg 534
Query: 2296 accaatgcattcatagcaccagctttcttatgatggttatagcctggtcgtttctctcta 2355
|||||||| || ||||||||||| ||||| | ||||||||||||| ||| |||||
Sbjct: 533 accaatgcgttaatagcaccagccttcttgtatgggttatagcctggcgttttttctctt 474
Query: 2356 gaaacataaaccaatcgtggcagttcatttccctc-acagtcaaggcctccgctttggcc 2414
||||||||||||||||| ||||| |||||||| || ||| |||||||| || ||||| ||
Sbjct: 473 gaaacataaaccaatcgaggcagctcatttccttccaca-tcaaggccaccactttgacc 415
Query: 2415 aaggaagacctgaatcattccaggatgatcacgaacattgtttccaggccagggggttcc 2474
|||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||
Sbjct: 414 aaggaagacctgaatcattccagggtgatcacggacattgtttcctggccagggagtacc 355
Query: 2475 atcttgcattgtccatccttcttcaggaactttctgggctttggcaactaaggcattgat 2534
||| ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 354 atcctgcatggtccatccttcctcaggaactttctgggctttagcaaccaaggcattgat 295
Query: 2535 tctcaccttgaattcctcatactctctcttcattgctctcctctccctaacaaagtttgc 2594
|| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 294 tcggatcttgaattcctcatactctctcttcattgctctcctgtccctaacaaagtttgg 235
Query: 2595 tgccaccttgtctttcaagtagtctatcttctgttggaagtaccactctggagcgcgagg 2654
| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 234 taccaccttgtctttcaggtagtctatcttctgttgaaagtaccactctggagcacgagg 175
Query: 2655 ttcaatattgtaccgtttgcagaaaggaacccatttctttgcaaattcagatgtttcaga 2714
|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ctcaatactgtacttcttacagaaaggaacccatttctttgcaaattcagatgtttcaga 115
Query: 2715 taatgcttcaaacgttagcattgcagcaccatcatcagaaacatagcaagaaaccttatc 2774
||| |||| || || ||||| ||||||||||||||||||||||||||||| | ||| ||
Sbjct: 114 caatccttcgaatgtcagcatggcagcaccatcatcagaaacatagcaagagagcttgtc 55
Query: 2775 aacaggataatccaccgaaaggatagatagaacagtatttgttgtgac 2822
||| |||||||| || | ||||||||||| | ||| |||| ||||||
Sbjct: 54 aaccggataatctacagccaggatagataggatagtgtttgctgtgac 7
>gb|CA031178.1|CA031178 HX09D18r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D18
5-PRIME, mRNA sequence
Length = 654
Score = 589 bits (297), Expect = e-166
Identities = 543/625 (86%)
Strand = Plus / Minus
Query: 1421 caatagacccaagagcccaccgaagcacctggtgaagacgatctgaaagattcagaggtg 1480
||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |
Sbjct: 654 caatagacccaagagcccaccgaagaacctggttaagacgatctgaaagattgagaggcg 595
Query: 1481 cagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaat 1540
||||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 594 cagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcgccagccatggcaat 535
Query: 1541 gcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctctt 1600
||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 534 gcatcttaaacccagttaggatatcctctgtaactgacccatagatccagccaatctctt 475
Query: 1601 ttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaa 1660
||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||| ||
Sbjct: 474 ttccccagtctgtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaa 415
Query: 1661 gagaagcaggacttgcactcttcaaggttccaccattctcgagaagtgtggatgtaacca 1720
||||||||||||| ||| | ||| ||||||||||||||| ||||||||||||| ||| |
Sbjct: 414 gagaagcaggactatcacacctcagggttccaccattctcaagaagtgtggatgcaacaa 355
Query: 1721 aaacagaagattggccaaatttcttttctaatttttgttgatttacaataccggcctttt 1780
|||| | ||| |||||||||||||| |||| || ||||| ||||||||||| ||||| |
Sbjct: 354 aaacggcagactggccaaatttcttctctagcttctgttggtttacaataccagccttct 295
Query: 1781 cattctcagctcctggagcagcttcgtcaatttcaccaagagcatatgcaggggattggt 1840
| | |||||||||| || ||||| |||||||||| ||| || || ||||| ||||| |
Sbjct: 294 gagtttcagctcctgcggcggcttcatcaatttcactaagtgcgtacgcaggtgattgat 235
Query: 1841 tctcttctttcttgaaaaataataactttttcttctctgttttgggtttggtagtcttct 1900
||||||| ||||||||||| || ||| ||||| ||||| || || |||||| |||||
Sbjct: 234 tctcttccttcttgaaaaacaacctcttcttcttttctgtctttggcttggtaaccttct 175
Query: 1901 tcttttgcttcctattgccaaagcagcaacagcaaaagcaccacttgggccagcagttgc 1960
|||| | |||||| || || |||||| ||||||| | |||||||| |||||||||||||
Sbjct: 174 tcttgttcttcctgttaccgaagcagaaacagcacacacaccactttggccagcagttgc 115
Query: 1961 aagtccttgatggtggcttctttgttttgggggcatcataaccatataatgcctgccttc 2020
|||||||||| |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 114 aagtccttgacggtggcttctttgttttgggagcatcataaccgtacagtgcctgccttc 55
Query: 2021 taaatacacatccagtaccaacata 2045
| || ||||||||||||||||||||
Sbjct: 54 tcaagacacatccagtaccaacata 30
>gb|BF628750.2|BF628750 HVSMEb0007M11f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007M11f, mRNA sequence
Length = 693
Score = 565 bits (285), Expect = e-159
Identities = 591/693 (85%)
Strand = Plus / Minus
Query: 1552 ccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccagtct 1611
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 693 ccagttaggatatcctctgtaactgacccatagatccagccaatctcttttccccagtct 634
Query: 1612 gtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagagaagcagga 1671
|||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||
Sbjct: 633 gtcttgtcttcatagccacaaccgatgacatggatagcttccttcagaagagaagcagga 574
Query: 1672 cttgcactcttcaaggttccaccattctcgagaagtgtggatgtaaccaaaacagaagat 1731
|| ||| | ||| ||||||||||||||| ||||||||||||| ||| ||||| | |||
Sbjct: 573 ctatcacacctcagggttccaccattctcaagaagtgtggatgcaacaaaaacggcagac 514
Query: 1732 tggccaaatttcttttctaatttttgttgatttacaataccggccttttcattctcagct 1791
|||||||||||||| |||| || ||||| ||||||||||| ||||| | | | ||||||
Sbjct: 513 tggccaaatttcttctctagcttctgttggtttacaataccagccttctgagtttcagct 454
Query: 1792 cctggagcagcttcgtcaatttcaccaagagcatatgcaggggattggttctcttctttc 1851
|||| || ||||| |||||||||| ||| || || ||||| ||||| |||||||| |||
Sbjct: 453 cctgcggcggcttcatcaatttcactaagtgcgtacgcaggtgattgattctcttccttc 394
Query: 1852 ttgaaaaataataactttttcttctctgttttgggtttggtagtcttcttcttttgcttc 1911
|||||||| || ||| ||||| ||||| || || |||||| ||||||||| | ||||
Sbjct: 393 ttgaaaaacaacctcttcttcttttctgtctttggcttggtaaccttcttcttgttcttc 334
Query: 1912 ctattgccaaagcagcaacagcaaaagcaccacttgggccagcagttgcaagtccttgat 1971
|| || || |||||| ||||||| | |||||||| ||||||||||| |||||||||||
Sbjct: 333 ctgttaccgaagcagaaacagcacacacaccactttggccagcagttacaagtccttgac 274
Query: 1972 ggtggcttctttgttttgggggcatcataaccatataatgcctgccttctaaatacacat 2031
|||||||||||||||||||| ||||||||||| || | |||||||||||| || ||||||
Sbjct: 273 ggtggcttctttgttttgggagcatcataaccgtacagtgcctgccttctgaagacacat 214
Query: 2032 ccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatcaaaa 2091
|||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 213 ccagtaccaacatagatggggccttgaataccatccaaacctttcatgttgatatcaaag 154
Query: 2092 aagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttgaggg 2151
||||| || ||| ||| |||||||| || || || ||||| || ||||||||||||
Sbjct: 153 aagacgacgttcttgttggcatatcgatcgtgacggtcaatggagtcgaatctttgaggg 94
Query: 2152 aactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgcttcc 2211
||||| ||||| |||||||||||||| | ||||| |||||||| |||||||||||||||
Sbjct: 93 aactgcacataacaaaccttctttccgaccaaaggatccatcatgaaacacattgcttcc 34
Query: 2212 tttatagccttgctgttgttgatgtagtgatca 2244
|| | |||||||||||||| | |||||||||
Sbjct: 33 ttgactgccttgctgttgttcacatagtgatca 1
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 553 bits (279), Expect = e-155
Identities = 555/647 (85%)
Strand = Plus / Minus
Query: 832 agatggacaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactca 891
||||| ||||||||||| || || ||||| |||||||| ||||| || |||||||| |||
Sbjct: 660 agatgaacaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattca 601
Query: 892 tatccgttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagc 951
|||||||| ||||| || || || | |||||| |||||||| |||||||||| ||||||
Sbjct: 600 tatccgttgttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagc 541
Query: 952 aaggtggtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcc 1011
| |||||| || || ||||| ||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 540 agggtggtcgggggaatcaacaaggttgtccatttgaatgtatacagctcagaaaactcc 481
Query: 1012 tcatcatctccaccctttgatgtcacggtgaagcttgtatcaacaccagctatgaccttg 1071
||||||||||| |||||| ||| ||||||||||| || || ||||||||||| ||||||
Sbjct: 480 tcatcatctccggcctttgttgtgacggtgaagctagtgtccacaccagctatcaccttg 421
Query: 1072 agaagtccctggaacacagcaaagaggtgtgaggacacacctccaatgacccagaactgc 1131
|||||||| |||||||| ||||| || || | || ||||||||||||||||||||||||
Sbjct: 420 agaagtccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgc 361
Query: 1132 tcattcctccaccagtcatcaattccaacaccactccatctcatttctaggatgctcgta 1191
|| || |||||||| || |||| | | |||| | |||||||||||| || || | ||||
Sbjct: 360 tcgtttctccaccaatcgtcaactgcgacacgagcccatctcatttccagaatacccgta 301
Query: 1192 gcaaaaatgcagataaaaagtgacatgaaccacaggctggcaacattattcagctctgga 1251
|| ||||||||||| |||||||||||| |||| | ||||||| || | |||||||||
Sbjct: 300 gcgaaaatgcagatgaaaagtgacatgtaccagatactggcaaggttgctaagctctgga 241
Query: 1252 gtgataaatttccctgtcaataaacagatggcaggcaatgtacagtaagccaagagggga 1311
||||| || || || || || || ||||| || ||||| ||||||||||||| || |||
Sbjct: 240 gtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagccagaagtgga 181
Query: 1312 atagatgtccaaggatacacgatggagttgatgtaggaaaatctttccaaaaatttcaga 1371
|| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atggaggtccaaggatagacaatggagttgatgtaggaaaatctttccaaaaatttcagt 121
Query: 1372 ccgccaccatacccataccaaagagggcaatgattgctgaagaagatctcaatagaccca 1431
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 120 ccaccaccatacccataccaaagagggcaatggttgctgaagaagatctcaatagaccca 61
Query: 1432 agagcccaccgaagcacctggtgaagacgatctgaaagattcagagg 1478
|||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct: 60 agagcccaccgaagaacctggttaagacgatctgaaagattgagagg 14
>gb|CA017986.1|CA017986 HV07A23r HV Hordeum vulgare subsp. vulgare cDNA clone HV07A23
5-PRIME, mRNA sequence
Length = 569
Score = 525 bits (265), Expect = e-147
Identities = 491/569 (86%), Gaps = 2/569 (0%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttgctgttgttgatgtagtgatcacaa 2247
|||||||| ||||||||||||||||| | |||||||||||||| | ||||||| |||
Sbjct: 568 tccatcatgaaacacattgcttccttgactgccttgctgttgttcacatagtgatnncaa 509
Query: 2248 tccaagtttaacaaatatggagcatttgttagtacagcagagactcggaccaatgcattc 2307
|||||||| | || ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 508 tccaagttcagcatgtatggagcattagttagtacagcagagacccggaccaatgcgttc 449
Query: 2308 atagcaccagctttcttatgatggttatagcctggtcgtttctctctagaaacataaacc 2367
|||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 448 atagcaccnnncttcttgtgatggttatagcctggccgtttttctcttgaaacataaacc 389
Query: 2368 aatcgtggcagttcatttccctcacagtcaaggcctccgctttggccaaggaagacctga 2427
||||| ||||| |||||||| | |||||||| || ||||| |||||||||||||||
Sbjct: 388 aatcgaggcagctcatttccttnnncatcaaggccaccactttgaccaaggaagacctga 329
Query: 2428 atcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgcattgtc 2487
||||||||||| |||||||| ||||||||||| |||| | || ||||| ||||| |||
Sbjct: 328 atcattccagggtgatcacggacattgtttcctggcccnngagtaccatcctgcatggtc 269
Query: 2488 catccttcttcaggaactttctgggctttggcaactaaggcattgattctcaccttgaat 2547
|||||||| |||||||||||||||||||| ||||| || |||| |||| | |||||||
Sbjct: 268 catccttcctcaggaactttctgggctttagcaaccaaagcatnnattcggatcttgaat 209
Query: 2548 tcctcatactctctcttcattgctctcctctccctaacaaagtttgctgccaccttgtct 2607
||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||
Sbjct: 208 tcctcatactctctcttcattgctctcctgtccctaacaaagtttggtacnnncttgtct 149
Query: 2608 ttcaagtagtctatcttctgttggaagtaccactctggagcgcgaggttcaatattgtac 2667
|||| |||||||||||||||||| ||||||||||||||||| ||||| |||||| ||| |
Sbjct: 148 ttcaggtagtctatcttctgttgaaagtaccactctggagcacgaggctcaatactgt-c 90
Query: 2668 cgtttgcagaaaggaacccatttctttgcaaattcagatgtttcagataatgcttcaaac 2727
|| |||||| | |||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct: 89 ttcttacagaaa-gnacccatttctttgcaaattcagatgtttcagacaatccttcgaat 31
Query: 2728 gttagcattgcagcaccatcatcagaaac 2756
|| ||||| ||||||||||||||||||||
Sbjct: 30 gtcagcatggcagcaccatcatcagaaac 2
>gb|BU996252.1|BU996252 HM13A10r HM Hordeum vulgare subsp. vulgare cDNA clone HM13A10
5-PRIME, mRNA sequence
Length = 629
Score = 523 bits (264), Expect = e-146
Identities = 528/616 (85%)
Strand = Plus / Minus
Query: 1757 gttgatttacaataccggccttttcattctcagctcctggagcagcttcgtcaatttcac 1816
|||| ||||||||||| ||||| | | | |||||||||| || ||||| ||||||||||
Sbjct: 629 gttggtttacaataccagccttctgagtttcagctcctgcggcggcttcatcaatttcac 570
Query: 1817 caagagcatatgcaggggattggttctcttctttcttgaaaaataataactttttcttct 1876
||| || || ||||| ||||| |||||||| ||||||||||| || ||| ||||| |
Sbjct: 569 taagtgcgtacgcaggtgattgattctcttccttcttgaaaaacaacctcttcttctttt 510
Query: 1877 ctgttttgggtttggtagtcttcttcttttgcttcctattgccaaagcagcaacagcaaa 1936
|||| || || |||||| ||||||||| | |||||| || || |||||| ||||||| |
Sbjct: 509 ctgtctttggcttggtaaccttcttcttgttcttcctgttaccgaagcagaaacagcaca 450
Query: 1937 agcaccacttgggccagcagttgcaagtccttgatggtggcttctttgttttgggggcat 1996
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 449 cacaccactttggccagcagttgcaagtccttgacggtggcttctttgttttgggagcat 390
Query: 1997 cataaccatataatgcctgccttctaaatacacatccagtaccaacataaattggaccct 2056
||||||| || | |||||||||||| || |||||||||||||||||||| || || || |
Sbjct: 389 cataaccgtacagtgcctgccttctgaagacacatccagtaccaacatagatggggcctt 330
Query: 2057 gaataccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagcatatc 2116
|||||||||||||||||||||||||||||||||| ||||| || ||| ||| |||||||
Sbjct: 329 gaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggcatatc 270
Query: 2117 ggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagcaaaccttctttc 2176
| ||||| || ||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct: 269 gatcatgacggtcaatggagtcgaatctttgagggaactgcacataacaaaccttctttc 210
Query: 2177 ctagtaaagggtccatcataaaacacattgcttcctttatagccttgctgttgttgatgt 2236
| | ||||| |||||||| ||||||||||||||||| | |||||||||||||| | |
Sbjct: 209 cgaccaaaggatccatcatgaaacacattgcttccttgactgccttgctgttgttcacat 150
Query: 2237 agtgatcacaatccaagtttaacaaatatggagcatttgttagtacagcagagactcgga 2296
||||||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||
Sbjct: 149 agtgatcacaatccaagttcagcatgtatggagcattagttagtacagcagagacccgga 90
Query: 2297 ccaatgcattcatagcaccagctttcttatgatggttatagcctggtcgtttctctctag 2356
||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |
Sbjct: 89 ccaatgcgttcatagcaccagccttcttgtgatggttatagcctggccgtttttctcttg 30
Query: 2357 aaacataaaccaatcg 2372
||||||||||||||||
Sbjct: 29 aaacataaaccaatcg 14
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 504 bits (254), Expect = e-140
Identities = 531/622 (85%), Gaps = 1/622 (0%)
Strand = Plus / Minus
Query: 832 agatggacaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactca 891
||||| ||||||||||| || || ||||| |||||||| ||||| || |||||||| |||
Sbjct: 635 agatgaacaatcacccagaacgcgaagaagagcttcccgaagagaggcccccatgattca 576
Query: 892 tatccgttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagc 951
|||||||| ||||| || || || | |||||| |||||||| |||||||||| ||||||
Sbjct: 575 tatccgttgttgattgcgttggagatgccagcaaccacaccgatgaagttcagcagaagc 516
Query: 952 aaggtggtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcc 1011
| |||||| || || ||||| ||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 515 agggtggtcgggggaatcaacaaggttgtccatttgaatgtatacagctcagaaaactcc 456
Query: 1012 tcatcatctccaccctttgatgtcacggtgaagcttgtatcaacaccagctatgaccttg 1071
||||||||||| |||||| ||| ||||||||||| || || ||||||||||| ||||||
Sbjct: 455 tcatcatctccggcctttgttgtgacggtgaagctagtgtccacaccagctatcaccttg 396
Query: 1072 agaagtccctggaacacagcaaagaggtgtgaggacacacctccaatgacccagaactgc 1131
|||||||| |||||||| ||||| || || | || ||||||||||||||||||||||||
Sbjct: 395 agaagtccttggaacacggcaaatagatgggcagagacacctccaatgacccagaactgc 336
Query: 1132 tcattcctccaccagtcatcaattccaacaccactccatctcatttctaggatgctcgta 1191
|| || |||||||| || |||| | | |||| | |||||||||||| || || | ||||
Sbjct: 335 tcgtttctccaccaatcgtcaactgcgacacgagcccatctcatttccagaatacccgta 276
Query: 1192 gcaaaaatgcagataaaaagtgacatgaaccacaggctggcaacattattcagctctgga 1251
|| ||||||||||| |||||||||||| |||| | ||||||| || | |||||||||
Sbjct: 275 gcgaaaatgcagatgaaaagtgacatgtaccagatactggcaaggttgctaagctctgga 216
Query: 1252 gtgataaatttccctgtcaataaacagatggcaggcaatgtacagtaagccaagagggga 1311
||||| || || || || || || ||||| || ||||| ||||||||||||| || |||
Sbjct: 215 gtgatgaacttgcccgttaacaagcagatagcgggcaacgtacagtaagccagaagtgga 156
Query: 1312 atagatgtccaaggatacacgatggagttgatgtaggaaaatctttccaaaaatttcaga 1371
|| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atggaggtccaaggatagacaatggagttgatgtaggaaaatctttccaaaaatttcagt 96
Query: 1372 ccgccaccatacccataccaaagagggcaatgattgctgaagaagatctcaatagaccca 1431
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 95 ccaccaccatacccataccaaagagggcaatggttgct-aagaagatctcaatagaccca 37
Query: 1432 agagcccaccgaagcacctggt 1453
|||||||||||||| |||||||
Sbjct: 36 agagcccaccgaagaacctggt 15
>gb|BU967435.1|BU967435 HB04E22r BC Hordeum vulgare subsp. vulgare cDNA clone HB04E22
5-PRIME, mRNA sequence
Length = 634
Score = 484 bits (244), Expect = e-134
Identities = 526/619 (84%), Gaps = 1/619 (0%)
Strand = Plus / Minus
Query: 1686 ggttccaccattctcgagaagtgtggatgtaaccaaaacaga-agattggccaaatttct 1744
||||||||||||||| ||||||||||||| ||| ||||| | ||| |||||||||||||
Sbjct: 633 ggttccaccattctcaagaagtgtggatgcaacaaaaacggncagactggccaaatttct 574
Query: 1745 tttctaatttttgttgatttacaataccggccttttcattctcagctcctggagcagctt 1804
| |||| || ||||| ||||||||||| ||||| | | | |||||||||| || ||||
Sbjct: 573 tctctagcttctgttggtttacaataccagccttctgagtttcagctcctgcggcggctt 514
Query: 1805 cgtcaatttcaccaagagcatatgcaggggattggttctcttctttcttgaaaaataata 1864
| |||||||||| ||| || || ||||| ||||| |||||||| ||||||||||| ||
Sbjct: 513 catcaatttcactaagtgcgtacgcaggtgattgattctcttccttcttgaaaaacaacc 454
Query: 1865 actttttcttctctgttttgggtttggtagtcttcttcttttgcttcctattgccaaagc 1924
||| ||||| ||||| || || |||||| ||||||||| | |||||| || || ||||
Sbjct: 453 tcttcttcttttctgtctttggcttggtaaccttcttcttgttcttcctgttaccgaagc 394
Query: 1925 agcaacagcaaaagcaccacttgggccagcagttgcaagtccttgatggtggcttctttg 1984
|| ||||||| | |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 393 agaaacagcacacacaccactttggccagcagttgcaagtccttgacggtggcttctttg 334
Query: 1985 ttttgggggcatcataaccatataatgcctgccttctaaatacacatccagtaccaacat 2044
||||||| ||||||||||| || | |||||||||||| || |||||||||||||||||||
Sbjct: 333 ttttgggagcatcataaccgtacagtgcctgccttctgaagacacatccagtaccaacat 274
Query: 2045 aaattggaccctgaataccatccaaacctttcatgttgatatcaaaaaagacaacattcc 2104
| || || || ||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 273 agatggggccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttct 214
Query: 2105 ggttagcatatcggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagc 2164
||| |||||||| ||||| || ||||| || ||||||||||||||||| ||||| |
Sbjct: 213 tgttggcatatcgatcatgacggtcaatggagtcgaatctttgagggaactgcacataac 154
Query: 2165 aaaccttctttcctagtaaagggtccatcataaaacacattgcttcctttatagccttgc 2224
||||||||||||| | ||||| |||||||| ||||||||||||||||| | |||||||
Sbjct: 153 aaaccttctttccgaccaaaggatccatcatgaaacacattgcttccttgactgccttgc 94
Query: 2225 tgttgttgatgtagtgatcacaatccaagtttaacaaatatggagcatttgttagtacag 2284
||||||| | |||||||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 93 tgttgttcacatagtgatcacaatccaagttcagcatgtatggagcattagttagtacag 34
Query: 2285 cagagactcggaccaatgc 2303
||||||| |||||||||||
Sbjct: 33 cagagacccggaccaatgc 15
>gb|CA020497.1|CA020497 HZ36H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36H21
5-PRIME, mRNA sequence
Length = 556
Score = 474 bits (239), Expect = e-131
Identities = 471/547 (86%), Gaps = 1/547 (0%)
Strand = Plus / Minus
Query: 1500 ccgtttaggtatgcagtaaattgaccgccaaccatgacaatgcatcttgaaaccagttag 1559
||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 556 ccgtttaggaatgcagtaaattgatcgccagccatggcaatgcatcttaaacccagttag 497
Query: 1560 aatatcttctgtaactgatcc-atagatccagccaatctcttttccccagtctgtcttgt 1618
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gatatcctctgtaactgaccccatagatccagccaatctcttttccccagtctgtcttgt 437
Query: 1619 cttcataaccacaactaatgacatgtatagcttctttcaaaagagaagcaggacttgcac 1678
||||||| ||||||| |||||||| |||||||| |||| ||||||||||||||| |||
Sbjct: 436 cttcatagccacaaccgatgacatggatagcttccttcagaagagaagcaggactatcac 377
Query: 1679 tcttcaaggttccaccattctcgagaagtgtggatgtaaccaaaacagaagattggccaa 1738
| ||| ||||||||||||||| ||||||||||||| ||| ||||| | ||| |||||||
Sbjct: 376 acctcagggttccaccattctcaagaagtgtggatgcaacaaaaacggcagactggccaa 317
Query: 1739 atttcttttctaatttttgttgatttacaataccggccttttcattctcagctcctggag 1798
||||||| |||| || ||||| ||||||||||| ||||| | | | |||||||||| |
Sbjct: 316 atttcttctctagcttctgttggtttacaataccagccttctgagtttcagctcctgcgg 257
Query: 1799 cagcttcgtcaatttcaccaagagcatatgcaggggattggttctcttctttcttgaaaa 1858
| ||||| |||||||||| ||| || || ||||| ||||| |||||||| ||||||||||
Sbjct: 256 cggcttcatcaatttcactaagtgcgtacgcaggtgattgattctcttccttcttgaaaa 197
Query: 1859 ataataactttttcttctctgttttgggtttggtagtcttcttcttttgcttcctattgc 1918
| || ||| ||||| ||||| || || |||||| ||||||||| | |||||| || |
Sbjct: 196 acaacctcttcttcttttctgtctttggcttggtaaccttcttcttgttcttcctgttac 137
Query: 1919 caaagcagcaacagcaaaagcaccacttgggccagcagttgcaagtccttgatggtggct 1978
| |||||| ||||||| | |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 136 cgaagcagaaacagcacacacaccactttggccagcagttgcaagtccttgacggtggct 77
Query: 1979 tctttgttttgggggcatcataaccatataatgcctgccttctaaatacacatccagtac 2038
||||||||||||| ||||||||||| || | |||||||||||| || |||||||||||||
Sbjct: 76 tctttgttttgggagcatcataaccgtacagtgcctgccttctgaagacacatccagtac 17
Query: 2039 caacata 2045
|||||||
Sbjct: 16 caacata 10
>gb|BM372877.2|BM372877 EBma04_SQ002_E01_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_E01 5', mRNA sequence
Length = 477
Score = 464 bits (234), Expect = e-128
Identities = 419/478 (87%), Gaps = 2/478 (0%)
Strand = Plus / Minus
Query: 1948 ggccagcagttgcaagtccttgatggtggcttctttgttttgggggcatcataaccatat 2007
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 477 ggccagcagttgcaagtccttgacggtggcttctttgttttgggagcatcataaccgtac 418
Query: 2008 aatgcctgccttctaaatacacatccagtaccaacataaattggaccctgaataccatcc 2067
| |||||||||||| || |||||||||||||||||||| || || || ||||||||||||
Sbjct: 417 agtgcctgccttctgaagacacatccagtaccaacatagatggggccttgaataccatcc 358
Query: 2068 aaacctttcatgttgatatcaaaaaagacaacattccggttagcatatcggtcatggcga 2127
||||||||||||||||||||||| ||||| || ||| ||| |||||||| || || ||
Sbjct: 357 aaacctttcatgttgatatcaaagaagacgacgttcttgttggcatatcgatcgtgacgg 298
Query: 2128 tcaatcccatcaaatctttgagggaactgtacatagcaaaccttctttcctagtaaaggg 2187
||||| || ||||||||||||||||| ||||| |||||||||||||| | |||||
Sbjct: 297 tcaatggagtcgaatctttgagggaactgcacataacaaaccttctttccgaccaaagga 238
Query: 2188 tccatcataaaacacattgcttcctttatagccttgctgttgttgatgtagtgatcacaa 2247
|||||||| ||||||||||||||||| | |||||||||||||| | ||||||||||||
Sbjct: 237 tccatcatgaaacacattgcttccttgactgccttgctgttgttcacatagtgatcacaa 178
Query: 2248 tccaagtttaacaaatatggagcatttgttagtacagcagagactcggaccaatgcattc 2307
|||||||| | || ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 177 tccaagttcagcatgtatggagcattagttagtacagcagagacccggaccaatgcgttc 118
Query: 2308 atagcaccagctttcttatgatggttatagcctggtcgtttctctctagaaacataaacc 2367
||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 117 atagcaccagccttcttgtgatggttatagcctggccgtttttctcttgaaacataaacc 58
Query: 2368 aatcgtggcagttcatttccct-cacagtcaaggcctccgctttggccaaggaagacc 2424
||||| ||||| |||||||| | |||| |||||||| || ||||| ||||||||||||
Sbjct: 57 aatcgaggcagctcatttccttccaca-tcaaggccaccactttgaccaaggaagacc 1
>gb|AL505671.1|AL505671 AL505671 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C19V 5', mRNA sequence
Length = 497
Score = 450 bits (227), Expect = e-124
Identities = 430/497 (86%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 1409 tgaagaagatctcaatagacccaagagcccacc-gaagcacctggtgaagacgatctgaa 1467
||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct: 497 tgaagaagatctcaatagacccaagagcccacccgaagaacctggttaagacgatctgaa 438
Query: 1468 agattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgc 1527
||||| ||||| |||||||| ||||||||| ||||||||| |||||||||||||| |||
Sbjct: 437 agattgagaggcgcagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcgc 378
Query: 1528 caaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccatagatc 1587
|| ||||| ||||||||||| || |||||||| ||||| ||||||||||| |||||||||
Sbjct: 377 cagccatggcaatgcatcttaaacccagttaggatatcctctgtaactgacccatagatc 318
Query: 1588 cagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgtata 1647
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 317 cagccaatctcttttccccagtctgtcttgtcttcatagccacaaccgatgacatggata 258
Query: 1648 gcttctttcaaaagagaagcaggacttgcactcttcaaggttccaccattctcgagaagt 1707
||||| |||| ||||||||||||||| ||| | ||| ||||||||||||||| ||||||
Sbjct: 257 gcttccttcagaagagaagcaggactatcacacctcagggttccaccattctcaagaagt 198
Query: 1708 gtggatgtaaccaaaacagaagattggccaaatttcttttctaatttttgttgatttaca 1767
||||||| ||| ||||| | ||| |||||||||||||| |||| || ||||| ||| ||
Sbjct: 197 gtggatgcaacaaaaacggcagactggccaaatttcttctctagcttctgttggtttnca 138
Query: 1768 ataccggccttttcattctcagctcctggagcagcttcgtcaatttcaccaagagcatat 1827
||||| ||||| | | | |||||||||| || ||||| |||||||||| ||| || ||
Sbjct: 137 ataccagccttctgagtttcagctcctgcggcggcttcatcaatttcactaagtgcgtac 78
Query: 1828 gcaggggattggttctcttctttcttgaaaaataataactttttcttctctgttttgggt 1887
||||| ||||| |||||||| ||||||||||| || ||| ||||| ||||| || ||
Sbjct: 77 gcaggtgattgattctcttccttcttgaaaaacaaccncttcttcttttctgtctttggc 18
Query: 1888 ttggtagtcttcttctt 1904
|||||| |||||||||
Sbjct: 17 ttggtaaccttcttctt 1
>gb|AV836573.1|AV836573 AV836573 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd25p02, mRNA sequence
Length = 349
Score = 444 bits (224), Expect = e-122
Identities = 301/327 (92%)
Strand = Plus / Minus
Query: 1347 ggaaaatctttccaaaaatttcagaccgccaccatacccataccaaagagggcaatgatt 1406
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 349 ggaaaatctttccaaaaatttcagtccaccaccatacccataccaaagagggcaatggtt 290
Query: 1407 gctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctga 1466
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 289 gctgaagaagatctcaatagacccaagagcccaccgaagaacctggttaagacgatctga 230
Query: 1467 aagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccg 1526
|||||| ||||| |||||||| ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 229 aagattgagaggcgcagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcg 170
Query: 1527 ccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccatagat 1586
||| ||||| ||||||||||| || |||||||| ||||| ||||||||||| ||||||||
Sbjct: 169 ccagccatggcaatgcatcttaaacccagttaggatatcctctgtaactgacccatagat 110
Query: 1587 ccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgtat 1646
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||
Sbjct: 109 ccagccaatctcttttccccagtctgtcttgtcttcatagccacanccgatgacatggat 50
Query: 1647 agcttctttcaaaagagaagcaggact 1673
|||||| |||| |||||||||||||||
Sbjct: 49 agcttccttcagaagagaagcaggact 23
>gb|CA009625.1|CA009625 HU14K11r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K11
5-PRIME, mRNA sequence
Length = 586
Score = 428 bits (216), Expect = e-118
Identities = 483/572 (84%)
Strand = Plus / Minus
Query: 1702 agaagtgtggatgtaaccaaaacagaagattggccaaatttcttttctaatttttgttga 1761
||||||||||||| ||| ||||| | ||| |||||||||||||| |||| || |||||
Sbjct: 584 agaagtgtggatgcaacaaaaacggcagactggccaaatttcttctctagcttctgttgg 525
Query: 1762 tttacaataccggccttttcattctcagctcctggagcagcttcgtcaatttcaccaaga 1821
||||||||||| ||||| | | | |||||||||| || ||||| |||||||||| |||
Sbjct: 524 tttacaataccagccttctgagtttcagctcctgcggcggcttcatcaatttcactaagt 465
Query: 1822 gcatatgcaggggattggttctcttctttcttgaaaaataataactttttcttctctgtt 1881
|| || ||||| ||||| |||||||| ||||||||||| || ||| ||||| |||||
Sbjct: 464 gcgtacgcaggtgattgattctcttccttcttgaaaaacaacctcttcttcttttctgtc 405
Query: 1882 ttgggtttggtagtcttcttcttttgcttcctattgccaaagcagcaacagcaaaagcac 1941
|| || |||||| ||||||||| | |||||| || || |||||| ||||||| | |||
Sbjct: 404 tttggcttggtaaccttcttcttgttcttcctgttaccgaagcagaaacagcacacacac 345
Query: 1942 cacttgggccagcagttgcaagtccttgatggtggcttctttgttttgggggcatcataa 2001
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 344 cactttggccagcagttgcaagtccttgacggtggcttctttgttttgggagcatcataa 285
Query: 2002 ccatataatgcctgccttctaaatacacatccagtaccaacataaattggaccctgaata 2061
|| || | |||||||||||| || |||||||||||||||||||| || || || ||||||
Sbjct: 284 ccgtacagtgcctgccttctgaagacacatccagtaccaacatagatggggccttgaata 225
Query: 2062 ccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagcatatcggtca 2121
||||||||||||||||||||||||||||| ||||| || ||| ||| |||||||| |||
Sbjct: 224 ccatccaaacctttcatgttgatatcaaagaagacgacgttcttgttggcatatcgatca 165
Query: 2122 tggcgatcaatcccatcaaatctttgagggaactgtacatagcaaaccttctttcctagt 2181
|| || ||||| || ||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 164 tgacggtcaatggagtcgaatctttgagggaactgcacataacaaaccttctttccgacc 105
Query: 2182 aaagggtccatcataaaacacattgcttcctttatagccttgctgttgttgatgtagtga 2241
||||| |||||||| ||||||||||||||||| | |||||||||||||| | ||||||
Sbjct: 104 aaaggatccatcatgaaacacattgcttccttgactgccttgctgttgttcacatagtga 45
Query: 2242 tcacaatccaagtttaacaaatatggagcatt 2273
|||||||||||||| | || |||||||||||
Sbjct: 44 tcacaatccaagttcagcatgtatggagcatt 13
>gb|AV923682.1|AV923682 AV923682 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd1a04 5', mRNA sequence
Length = 476
Score = 424 bits (214), Expect = e-116
Identities = 403/462 (87%), Gaps = 3/462 (0%)
Strand = Plus / Minus
Query: 2032 ccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatcaaaa 2091
|||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 461 ccagtaccaacatagatggggccttgaataccatccaaacctttcatgttgatatcaaag 402
Query: 2092 aagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttgaggg 2151
||||| || ||| ||| |||||||| || || || ||||| || ||||||||||||
Sbjct: 401 aagacgacgttcttgttggcatatcgatcgtgacggtcaatggagtcgaatctttgaggg 342
Query: 2152 aactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgcttcc 2211
||||| ||||| |||||||||||||| | ||||| |||||||| |||||||||||||||
Sbjct: 341 aactgcacataacaaaccttctttccgaccaaaggatccatcatgaaacacattgcttcc 282
Query: 2212 tttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatggagca 2271
|| | |||||||||||||| | |||||||||||||||||||| | || |||||||||
Sbjct: 281 ttgactgccttgctgttgttcacatagtgatcacaatccaagttcagcatgtatggagca 222
Query: 2272 tttgttagtacagcagagactcggaccaatgcattcatagcaccagctttcttatgatgg 2331
|| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 221 ttagttagtacagcagagacccggaccaatgcgttcatagcaccagccttcttgtgatgg 162
Query: 2332 ttatagcctggtcgtttctctctagaaacataaaccaatcgtggcagttcatttccct-c 2390
||||||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| | |
Sbjct: 161 ttatagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttccttcc 102
Query: 2391 acagtcaaggcctccgctttggccaaggaagacctgaatcattccaggatgatcacgaac 2450
||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct: 101 aca-tcaaggccaccactttgaccaaggaagacctgaatcattccagggtgatcacggac 43
Query: 2451 attgtttccaggccagggggttccatcttgcattgtccatcc 2492
||||||||| |||||||| || ||||| ||||| ||||||||
Sbjct: 42 attgtttcc-ggccagggagtaccatcctgcatggtccatcc 2
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 402 bits (203), Expect = e-110
Identities = 515/619 (83%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 629 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 570
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 569 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 510
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 509 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 450
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggtaggaggtatc 969
|| || | |||||| |||||||| |||||||||| ||||||| |||||| || || |||
Sbjct: 449 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 390
Query: 970 aataaggtagtccatttgaatgtatatagctctgagaactcctcatcatctccacccttt 1029
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 389 aacaaggttgtccatttgaatgtatacagctcagaaaactcctcatcatctccggccttt 330
Query: 1030 gatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagtccctggaacaca 1089
| ||| ||||||||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct: 329 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 270
Query: 1090 gcaaagaggtgtgaggacacacctccaatgacccagaactgctcattcctccaccagtca 1149
||||| || || | || |||||||||||||||||||||||||| || |||||||| ||
Sbjct: 269 gcaaatagatgggcagagacacctccaatgacccagaactgctcgtttctccaccaatcg 210
Query: 1150 tcaattccaacaccactccatctcatttctaggatgctcgtagcaaaaatgcagataaaa 1209
|||| | | |||| | |||||||||||| || || | |||||| ||||||||||| |||
Sbjct: 209 tcaactgcgacacgagcccatctcatttccagaatacccgtagcgaaaatgcagatgaaa 150
Query: 1210 agtgacatgaaccacaggctggcaacattattcagctctggagtgataaatttccctgtc 1269
||||||||| |||| | ||||||| || | |||||||||||||| || || || ||
Sbjct: 149 agtgacatgtaccagatactggcaaggttgctaagctctggagtgatgaacttgcccgtt 90
Query: 1270 aataaacagatggcaggcaatgtacagtaagccaagaggggaatagatgtccaaggatac 1329
|| || ||||| || ||||| ||||||||||||| || ||||| || |||||||||||
Sbjct: 89 aacaagcagatagcgggcaacgtacagtaagccagaagtggaatggaggtccaaggatag 30
Query: 1330 acgatggagttgatgtagg 1348
|| ||||||||||||||||
Sbjct: 29 acaatggagttgatgtagg 11
>gb|BQ765797.1|BQ765797 EBro03_SQ008_O01_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_O01 5', mRNA sequence
Length = 401
Score = 396 bits (200), Expect = e-108
Identities = 344/392 (87%)
Strand = Plus / Minus
Query: 1167 ccatctcatttctaggatgctcgtagcaaaaatgcagataaaaagtgacatgaaccacag 1226
|||||||||||| || || | |||||| ||||||||||| |||||||||||| |||| |
Sbjct: 392 ccatctcatttccagaatacccgtagcgaaaatgcagatgaaaagtgacatgtaccagat 333
Query: 1227 gctggcaacattattcagctctggagtgataaatttccctgtcaataaacagatggcagg 1286
||||||| || | |||||||||||||| || || || || || || ||||| || ||
Sbjct: 332 actggcaaggttgctaagctctggagtgatgaacttgcccgttaacaagcagatagcggg 273
Query: 1287 caatgtacagtaagccaagaggggaatagatgtccaaggatacacgatggagttgatgta 1346
||| ||||||||||||| || ||||| || ||||||||||| || ||||||||||||||
Sbjct: 272 caacgtacagtaagccagaagtggaatggaggtccaaggatagacaatggagttgatgta 213
Query: 1347 ggaaaatctttccaaaaatttcagaccgccaccatacccataccaaagagggcaatgatt 1406
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 212 ggaaaatctttccaaaaatttcagtccaccaccatacccataccaaagagggcaatggtt 153
Query: 1407 gctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctga 1466
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 152 gctgaagaagatctcaatagacccaagagcccaccgaagaacctggttaagacgatctga 93
Query: 1467 aagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccg 1526
|||||| ||||| |||||||| ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 92 aagattgagaggcgcagaacccttgaatgcaggccgtttaggaatgcagtaaattgatcg 33
Query: 1527 ccaaccatgacaatgcatcttgaaaccagtta 1558
||| ||||| ||||||||||| || |||||||
Sbjct: 32 ccagccatggcaatgcatcttaaacccagtta 1
>gb|CA024787.1|CA024787 HZ50E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50E24
5-PRIME, mRNA sequence
Length = 365
Score = 339 bits (171), Expect = 4e-091
Identities = 309/355 (87%)
Strand = Plus / Minus
Query: 2513 ctttggcaactaaggcattgattctcaccttgaattcctcatactctctcttcattgctc 2572
|||| ||||| || |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 365 ctttagcaaccaaagcattgattcggatcttgaattcctcatactctctcttcattgctc 306
Query: 2573 tcctctccctaacaaagtttgctgccaccttgtctttcaagtagtctatcttctgttgga 2632
|||| |||||||||||||||| | ||||||||||||||| |||||||||||||||||| |
Sbjct: 305 tcctgtccctaacaaagtttggtaccaccttgtctttcaggtagtctatcttctgttgaa 246
Query: 2633 agtaccactctggagcgcgaggttcaatattgtaccgtttgcagaaaggaacccatttct 2692
|||||||||||||||| ||||| |||||| ||||| || |||||||||||||||||||
Sbjct: 245 agtaccactctggagcacgaggctcaatactgtacttcttacagaaaggaacccatttct 186
Query: 2693 ttgcaaattcagatgtttcagataatgcttcaaacgttagcattgcagcaccatcatcag 2752
|||||||||| ||||||||||| ||| |||| || || ||||| ||||||||||||||||
Sbjct: 185 ttgcaaattccgatgtttcagacaatccttcgaatgtcagcatggcagcaccatcatcag 126
Query: 2753 aaacatagcaagaaaccttatcaacaggataatccaccgaaaggatagatagaacagtat 2812
||||||||||||| | ||| ||||| |||||||| || | ||||||||||| | ||| |
Sbjct: 125 aaacatagcaagagagcttgtcaaccggataatctacagccaggatagataggatagtgt 66
Query: 2813 ttgttgtgaccaaaggaggttcctttaagggatcaaccgtactgacaaagaaatc 2867
||| |||||| | ||||| ||||| |||||| || |||||||||||||||||
Sbjct: 65 ttgctgtgactagcggaggctccttagcgggatcgactgtactgacaaagaaatc 11
>gb|AV836609.1|AV836609 AV836609 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd18j24, mRNA sequence
Length = 548
Score = 331 bits (167), Expect = 1e-088
Identities = 347/407 (85%)
Strand = Plus / Minus
Query: 2794 aggatagatagaacagtatttgttgtgaccaaaggaggttcctttaagggatcaaccgta 2853
||||||||||| | ||| |||| |||||| | ||||| ||||| |||||| || |||
Sbjct: 537 aggatagataggatagtgtttgctgtgactagcggaggctccttagcgggatcgactgta 478
Query: 2854 ctgacaaagaaatcaattggagcaagttgagatggctggccttccttgtcgaacctcagt 2913
|||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 477 ctgacaaagaaatcaactggggcgagttgagatggctggccttccttgtcgaacctcaat 418
Query: 2914 gacagccggtctaggtaagtctctctctcaatagggaaccactttgggaattgatcaaga 2973
| || |||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct: 417 gtcaaccggtcaaggtaagtctccctctcaataggaaaccacttggggaattgatcgaga 358
Query: 2974 atccaagacatggcaaaccagatttcacagataacagatatgagccacaaagcaaatgca 3033
|||||||||||||||||||| || || || || |||||||||||||||||| ||||||||
Sbjct: 357 atccaagacatggcaaaccatatctcgcatatgacagatatgagccacaaaacaaatgca 298
Query: 3034 tcattcaccggatgcatcactcggtagtggaagaagaaccccaaaaccacaagccgaata 3093
|||| |||||||||||| || |||||||||||||||| | || || ||| | || ||
Sbjct: 297 tcatgcaccggatgcatgacacggtagtggaagaagagacacacaatcaccaaacggatc 238
Query: 3094 atgataatcatcctatatggattaatctggcttgatggaagtggaattttcctggacagt 3153
| || |||||||| || ||||||||| ||||||| |||| |||| || |||||||||
Sbjct: 237 acaatgatcatcctgtaaggattaatcaggcttgaaggaatgggaacctttctggacagt 178
Query: 3154 tgttgtcttgcttcatccattagtggtagatcagcatcgtcaccatc 3200
| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct: 177 ggctgtctagcttcatccattagtggtagatctgcatcgtcgccatc 131
Score = 61.9 bits (31), Expect = 2e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 3211 ccatcattccccgtctggtgcatcctctcttgtctctgcttccaattctccatccgttcc 3270
|||||||||| ||||| |||| |||||| || |||||||||| ||||||||| |||
Sbjct: 111 ccatcattcctggtctgatgcagcctctcctgcttctgcttccagctctccatcctctcc 52
Query: 3271 ttccaagcaacactaccatacccatatgcagcaagatccttggatgggtcc 3321
||||| || || || |||||||| || | | ||| ||||||||||||||||
Sbjct: 51 ttccaggcgacgctcccatacccgtaggaaccaatatccttggatgggtcc 1
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 317 bits (160), Expect = 2e-084
Identities = 352/416 (84%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 427 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 368
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 367 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 308
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 307 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 248
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggtaggaggtatc 969
|| || | |||||| |||||||| |||||||||| ||||||| |||||| || || |||
Sbjct: 247 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 188
Query: 970 aataaggtagtccatttgaatgtatatagctctgagaactcctcatcatctccacccttt 1029
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 187 aacaaggttgtccatttgaatgtatacagctcagaaaactcctcatcatctccggccttt 128
Query: 1030 gatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagtccctggaacaca 1089
| ||| ||||||||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct: 127 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 68
Query: 1090 gcaaagaggtgtgaggacacacctccaatgacccagaactgctcattcctccacca 1145
||||| || || | || |||||||||||||||||||||||||| || ||||||||
Sbjct: 67 gcaaatagatgggcagagacacctccaatgacccagaactgctcgtttctccacca 12
>gb|BQ469880.1|BQ469880 HX01C05T HX Hordeum vulgare subsp. vulgare cDNA clone HX01C05
5-PRIME, mRNA sequence
Length = 642
Score = 305 bits (154), Expect = 6e-081
Identities = 465/568 (81%), Gaps = 3/568 (0%)
Strand = Plus / Minus
Query: 3211 ccatcattccccgtctggtgcatcctctcttgtctctgcttccaattctccatccgttcc 3270
|||||||||| ||||| |||| |||||| || |||||||||| ||||||||| ||
Sbjct: 578 ccatcattcctggtctgatgcagcctctcctgcttctgcttccagctctccatcctctct 519
Query: 3271 ttccaagcaacactaccatacccatatgcagcaagatccttggatgggtccatagacctg 3330
||||| || || || |||||||| || | | ||| |||||||||||||||||| || ||
Sbjct: 518 ttccaggcgacgctcccatacccgtaggaaccaatatccttggatgggtccatggatctt 459
Query: 3331 ggttgcacaggtaagctgggatccgcataaggaaggggatgtatcctctttcccccacca 3390
||||||||||| | | ||| ||| |||||||| || || || |||||||||||||| ||
Sbjct: 458 ggttgcacaggaaggttggaatcagcataagggagcgggtggatcctctttcccccgccg 399
Query: 3391 cccatgaaagaaggcaccagcgcgtgctgctccggtgggatgtcatccaccatttgcccg 3450
|| | ||| ||||| || || || ||||||||||| ||||||||||| ||||| || ||
Sbjct: 398 ccgacgaaggaaggaacaagggcatgctgctccggcgggatgtcatcgaccatctggcca 339
Query: 3451 ttggtgaggagtggaacattggggttgagctggaaagcttgtggcgcgccattagggtca 3510
||||||||||| || ||||||||||| ||||||| | || || |||| | ||||
Sbjct: 338 ttggtgaggagggggacattggggtttggctggaagggctggtgcacgccgtcgaggtct 279
Query: 3511 cctccacggccgtagctcatgtggccgtagagcatggactcggccacagactgcgagtca 3570
|| || ||||||||| |||||||| | | ||||||||||||||| | ||||||||||
Sbjct: 278 ccgccgcggccgtaggtcatgtgggcatggagcatggactcggcggcgtactgcgagtcg 219
Query: 3571 tggccgtccc---agttgaactcgttgtccaggtcatcgacgccgtcctcctcctcgtca 3627
| | ||||| |||||||||||| || ||||| ||| |||||||||||||||| ||
Sbjct: 218 tccctgtccctccagttgaactcgtcctcgaggtcgtcggcgccgtcctcctcctcatcc 159
Query: 3628 ccggtcacacgttggcagcccttgaggcgcttgtatcgagtcttgcactgggggcagttc 3687
|||| ||| || ||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 158 ccgggcacgcgcgcgcaccccttgaggcgcttgtatctggtcttgcactgtgggcagttc 99
Query: 3688 tgcgtgccctcccggcgctcgtattcgtagcagtcccggcagacggggaaggcgcactcg 3747
|| |||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 98 tgggtgccctcgcgtcgctcgtactcgtagcagtcgcggcagacggggaaggcgcactcg 39
Query: 3748 ttgcacgccacgaaggggtccccgccgg 3775
||||| || ||||||||||| |||||||
Sbjct: 38 ttgcaggcgacgaaggggtcgccgccgg 11
Score = 65.9 bits (33), Expect = 1e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 3157 tgtcttgcttcatccattagtggtagatcagcatcgtcaccatca 3201
||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 641 tgtctagcttcatccattagtggtagatctgcatcgtcgccatca 597
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 272 bits (137), Expect = 9e-071
Identities = 308/365 (84%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 383 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 324
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 323 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 264
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 263 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 204
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggtaggaggtatc 969
|| || | |||||| |||||||| |||||||||| ||||||| |||||| || || |||
Sbjct: 203 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 144
Query: 970 aataaggtagtccatttgaatgtatatagctctgagaactcctcatcatctccacccttt 1029
|| ||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 143 aacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatcatctccggccttt 84
Query: 1030 gatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagtccctggaacaca 1089
| ||| ||||||||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct: 83 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 24
Query: 1090 gcaaa 1094
|||||
Sbjct: 23 gcaaa 19
>gb|BI957138.1|BI957138 HVSMEn0007L07f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0007L07f,
mRNA sequence
Length = 618
Score = 270 bits (136), Expect = 3e-070
Identities = 360/432 (83%), Gaps = 2/432 (0%)
Strand = Plus / Minus
Query: 1430 caagagcccaccgaagcacctggtgaagacgatctgaaaga-ttcagaggtgcagaacct 1488
||||||||||||||| | ||||| |||| |||| |||||| || ||||| |||||||||
Sbjct: 575 caagagcccaccgaacaaactggttaagatgatcggaaagaattaagaggggcagaacct 516
Query: 1489 ttgaatgcaacccgtttaggtatgcagtaaattgaccg-ccaaccatgacaatgcatctt 1547
|| |||||| ||| |||| |||||| |||||| | ||| | ||| ||| |||||||
Sbjct: 515 ttaaatgcaggccgcttagcaatgcaggtaattgaatggccagctatggcaaggcatctt 456
Query: 1548 gaaaccagttagaatatcttctgtaactgatccatagatccagccaatctcttttcccca 1607
|| |||||||| ||||| ||||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 455 aaacccagttaggatatcctctgtaattgagccatagatccagccaatctcttttccgca 396
Query: 1608 gtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagagaagc 1667
|||||| ||||||||||| ||||||| |||||||| |||||||| |||| |||||||||
Sbjct: 395 gtctgtgttgtcttcatagccacaaccgatgacatggatagcttcgttcagaagagaagc 336
Query: 1668 aggacttgcactcttcaaggttccaccattctcgagaagtgtggatgtaaccaaaacaga 1727
|||||| ||| | ||| ||||||||||||||| ||||||||||||| ||| ||||| |
Sbjct: 335 aggactatcacacgtcagggttccaccattctcaagaagtgtggatgcaacaaaaacggc 276
Query: 1728 agattggccaaatttcttttctaatttttgttgatttacaataccggccttttcattctc 1787
||| ||||| |||||||| |||| || ||||| ||||||||||| || || | | | ||
Sbjct: 275 agactggccgaatttcttctctagcttgtgttggtttacaataccagctttctgagtttc 216
Query: 1788 agctcctggagcagcttcgtcaatttcaccaagagcatatgcaggggattggttctcttc 1847
|||||||| || ||||| |||||||||| ||| || || ||||| ||||| ||||||||
Sbjct: 215 agctcctgcggcggcttcatcaatttcactaagtgcgtacgcaggtgattgattctcttc 156
Query: 1848 tttcttgaaaaa 1859
|||||||||||
Sbjct: 155 cttcttgaaaaa 144
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 270 bits (136), Expect = 3e-070
Identities = 323/384 (84%), Gaps = 1/384 (0%)
Strand = Plus / Plus
Query: 763 atggaccag-acgatgacaatcgttggtgtcctgttttgccttccaaccaaacctttgag 821
||||||||| ||||| || ||||| || |||||||| |||||||| | || ||| |||||
Sbjct: 191 atggaccagnacgatcacgatcgtcggggtcctgttctgccttcccaacagacccttgag 250
Query: 822 aaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagggggcc 881
|| || || ||||| ||||||||||| || || ||||| |||||||| ||||| || ||
Sbjct: 251 gaacgggtacagatgaacaatcacccagaacgcgaagaagagcttcccgaagagaggccc 310
Query: 882 ccatgactcatatccgttattgatcgcatttgaaacgccagcgaccacaccaatgaagtt 941
|||||| ||||||||||| ||||| || || || | |||||| |||||||| ||||||||
Sbjct: 311 ccatgattcatatccgttgttgattgcgttggagatgccagcaaccacaccgatgaagtt 370
Query: 942 caatagaagcaaggtggtaggaggtatcaataaggtagtccatttgaatgtatatagctc 1001
|| ||||||| |||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 371 cagcagaagcagggtggtcgggggaatcaacaaggttgtccatttgaatgtgtacagctc 430
Query: 1002 tgagaactcctcatcatctccaccctttgatgtcacggtgaagcttgtatcaacaccagc 1061
|| ||||||||||||||||| |||||| ||| ||||||||||| || || ||||||||
Sbjct: 431 agaaaactcctcatcatctccggcctttgttgtgacggtgaagctagtgtccacaccagc 490
Query: 1062 tatgaccttgagaagtccctggaacacagcaaagaggtgtgaggacacacctccaatgac 1121
||| |||||||||||||| |||||||| ||||| || || | || ||||||||||||||
Sbjct: 491 tatcaccttgagaagtccttggaacacggcaaatagatgggcagagacacctccaatgac 550
Query: 1122 ccagaactgctcattcctccacca 1145
|||||||||||| || ||||||||
Sbjct: 551 ccagaactgctcgtttctccacca 574
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 266 bits (134), Expect = 5e-069
Identities = 296/350 (84%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 354 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 295
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 294 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 235
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 234 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 175
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggtaggaggtatc 969
|| || | |||||| |||||||| |||||||||| ||||||| |||||| || || |||
Sbjct: 174 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 115
Query: 970 aataaggtagtccatttgaatgtatatagctctgagaactcctcatcatctccacccttt 1029
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 114 aacaaggttgtccatttgaatgtatacagctcagaaaactcctcatcatctccggccttt 55
Query: 1030 gatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagtcc 1079
| ||| ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 54 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtcc 5
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 260 bits (131), Expect = 3e-067
Identities = 296/351 (84%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 351 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 292
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 291 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 232
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 231 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 172
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggtaggaggtatc 969
|| || | |||||| |||||||| |||||||||| ||||||| |||||| || || |||
Sbjct: 171 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgggggaatc 112
Query: 970 aataaggtagtccatttgaatgtatatagctctgagaactcctcatcatctccacccttt 1029
|| ||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 111 aacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatcatctccggccttt 52
Query: 1030 gatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagtccc 1080
| ||| ||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 51 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccc 1
>gb|BJ463805.1|BJ463805 BJ463805 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30j03 5', mRNA sequence
Length = 364
Score = 260 bits (131), Expect = 3e-067
Identities = 266/311 (85%)
Strand = Plus / Minus
Query: 1807 tcaatttcaccaagagcatatgcaggggattggttctcttctttcttgaaaaataataac 1866
|||||||||| ||| || || ||||| ||||| |||||||| ||||||||||| || |
Sbjct: 361 tcaatttcactaagtgcgtacgcaggtgattgattctcttccttcttgaaaaacaacctc 302
Query: 1867 tttttcttctctgttttgggtttggtagtcttcttcttttgcttcctattgccaaagcag 1926
|| ||||| ||||| || || |||||| ||||||||| | |||||| || || ||||||
Sbjct: 301 ttcttcttttctgtctttggcttggtaaccttcttcttgttcttcctgttaccgaagcag 242
Query: 1927 caacagcaaaagcaccacttgggccagcagttgcaagtccttgatggtggcttctttgtt 1986
||||||| | |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 aaacagcacacacaccactttggccagcagttgcaagtccttgacggtggcttctttgtt 182
Query: 1987 ttgggggcatcataaccatataatgcctgccttctaaatacacatccagtaccaacataa 2046
||||| ||||||||||| || | |||||||||||| || ||||||||||||||||||||
Sbjct: 181 ttgggagcatcataaccgtacagtgcctgccttctgaagacacatccagtaccaacatag 122
Query: 2047 attggaccctgaataccatccaaacctttcatgttgatatcaaaaaagacaacattccgg 2106
|| || || ||||||||||||||||||||||||||||||||||| ||||| || ||| |
Sbjct: 121 atggggccttgaataccatccaaacctttcatgttgatatcaaagaagacgacgttcttg 62
Query: 2107 ttagcatatcg 2117
|| ||||||||
Sbjct: 61 ttggcatatcg 51
>gb|CA031702.1|CA031702 HX10O05r HX Hordeum vulgare subsp. vulgare cDNA clone HX10O05
5-PRIME, mRNA sequence
Length = 295
Score = 260 bits (131), Expect = 3e-067
Identities = 255/295 (86%), Gaps = 1/295 (0%)
Strand = Plus / Minus
Query: 2030 atccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatcaa 2089
|||||||||||||||| || || || ||||||||||||||||||||||||||||||||||
Sbjct: 295 atccagtaccaacatagatggggccttgaataccatccaaacctttcatgttgatatcaa 236
Query: 2090 aaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttgag 2149
| ||||| || ||| ||| |||||||| ||||| || ||||| || ||||||||||
Sbjct: 235 agaagacgacgttcttgttggcatatcgatcatgacggtcaatggagtcgaatctttgag 176
Query: 2150 ggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgctt 2209
||||||| ||||| |||||||||||||| | ||||| |||||||| |||||||||||||
Sbjct: 175 ggaactgcacataacaaaccttctttccgaccaaaggatccatcatgaaacacattgctt 116
Query: 2210 cctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatggag 2269
|||| | |||||||||||||| | |||||||||||||||||||| | || ||| |||
Sbjct: 115 ccttgactgccttgctgttgttcacatagtgatcacaatccaagttcagcatgtat-gag 57
Query: 2270 catttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
|||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 56 cattagttagtacagcagagacccggaccaatgcgttcatagcaccagccttctt 2
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 258 bits (130), Expect = 1e-066
Identities = 337/405 (83%), Gaps = 2/405 (0%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 405 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 346
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 345 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 286
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 285 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 226
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggtaggaggtatc 969
|| || | |||||| |||||||| |||||||||| ||||||| |||||| | | |||
Sbjct: 225 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggtcgccgccatc 166
Query: 970 aataaggtagtccatttgaatgtatatagctctgagaactcctcatcatctccacccttt 1029
|| ||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 165 aacaaggttgtccatttgaatgtgtacagctcagaaaactcctcatcatctccggccttt 106
Query: 1030 gatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagtccctggaacaca 1089
| ||| ||||||||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct: 105 gttgtgacggtgaagctagtgtccacaccagctatcaccttgagaagtccttggaacacg 46
Query: 1090 gcaaagaggtgtgaggacacacctccaat--gacccagaactgct 1132
||||| || || | || ||||||||||| |||||||||||||
Sbjct: 45 gcaaatagatgggcagagacacctccaatcgcacccagaactgct 1
>gb|BG366351.1|BG366351 HVSMEi0006M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006M09f, mRNA sequence
Length = 557
Score = 222 bits (112), Expect = 7e-056
Identities = 202/232 (87%)
Strand = Plus / Minus
Query: 3579 ccagttgaactcgttgtccaggtcatcgacgccgtcctcctcctcgtcaccggtcacacg 3638
|||||||||||||| || ||||| ||| |||||||||||||||| || |||| ||| ||
Sbjct: 285 ccagttgaactcgtcctcgaggtcgtcggcgccgtcctcctcctcatccccgggcacgcg 226
Query: 3639 ttggcagcccttgaggcgcttgtatcgagtcttgcactgggggcagttctgcgtgccctc 3698
||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 225 cgcgcaccccttgaggcgcttgtatctggtcttgcactgtgggcagttctgggtgccctc 166
Query: 3699 ccggcgctcgtattcgtagcagtcccggcagacggggaaggcgcactcgttgcacgccac 3758
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 165 gcgtcgctcgtactcgtagcagtcgcggcagacggggaaggcgcactcgttgcaggcgac 106
Query: 3759 gaaggggtccccgccgggggcaaggccgacgtcgtcgccgcaaatctggcac 3810
||||||||| ||||||||| | || || | |||||| |||||||||||||||
Sbjct: 105 gaaggggtcgccgccggggccgagccccaggtcgtccccgcaaatctggcac 54
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 155 bits (78), Expect = 1e-035
Identities = 192/230 (83%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
||||| |||||||||| ||| ||||||| ||| |||||||||||||| || ||||| ||
Sbjct: 242 acccacaggagcgagatgatcgaagccaacaggatggaccagacgatcacgatcgtcggg 183
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacccaa 849
|||||||| |||||||| | || ||| ||||| || || || ||||| |||||||||||
Sbjct: 182 gtcctgttctgccttcccaacagacccttgaggaacgggtacagatgaacaatcacccag 123
Query: 850 aatgcaaagaatagcttcccaaagagggggccccatgactcatatccgttattgatcgca 909
|| || ||||| |||||||| ||||| || |||||||| ||||||||||| ||||| ||
Sbjct: 122 aacgcgaagaagagcttcccgaagagaggcccccatgattcatatccgttgttgattgcg 63
Query: 910 tttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtggt 959
|| || | |||||| |||||||| |||||||||| ||||||| ||||||
Sbjct: 62 ttggagatgccagcaaccacaccgatgaagttcagcagaagcagggtggt 13
>gb|CA027985.1|CA027985 HZ60K07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60K07
5-PRIME, mRNA sequence
Length = 159
Score = 135 bits (68), Expect = 1e-029
Identities = 107/120 (89%)
Strand = Plus / Minus
Query: 3691 gtgccctcccggcgctcgtattcgtagcagtcccggcagacggggaaggcgcactcgttg 3750
|||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 155 gtgccctcgcgtcgctcgtactcgtagcagtcgcggcagacggggaaggcgcactcgttg 96
Query: 3751 cacgccacgaaggggtccccgccgggggcaaggccgacgtcgtcgccgcaaatctggcac 3810
|| || ||||||||||| ||||||||| | || || | |||||| |||||||||||||||
Sbjct: 95 caggcgacgaaggggtcgccgccggggccgagccccaggtcgtccccgcaaatctggcac 36
>gb|AL504419.1|AL504419 AL504419 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05D18V 5', mRNA sequence
Length = 671
Score = 129 bits (65), Expect = 8e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||||
Sbjct: 476 tgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaaccaatctca 417
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaa 1659
||||||| || | |||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 416 gttccccactcagacttgtcctcatagccacaacttatgacatggatagcttctttcaaa 357
Query: 1660 agaga 1664
|||||
Sbjct: 356 agaga 352
Score = 56.0 bits (28), Expect = 9e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagatt 1472
|||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 587 ccaagagcccaccggagcacttggttcagacgatctgaaagatt 544
>gb|BI951084.1|BI951084 HVSMEl0024F09f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0024F09f, mRNA sequence
Length = 900
Score = 129 bits (65), Expect = 8e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||||
Sbjct: 142 tgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaaccaatctca 83
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaa 1659
||||||| || | |||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 82 gttccccactcagacttgtcctcatagccacaacttatgacatggatagcttctttcaaa 23
Query: 1660 agaga 1664
|||||
Sbjct: 22 agaga 18
Score = 56.0 bits (28), Expect = 9e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagatt 1472
|||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 253 ccaagagcccaccggagcacttggttcagacgatctgaaagatt 210
>gb|AV932043.1|AV932043 AV932043 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 5', mRNA sequence
Length = 615
Score = 129 bits (65), Expect = 8e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||||
Sbjct: 141 tgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaaccaatctca 82
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaa 1659
||||||| || | |||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 81 gttccccactcagacttgtcctcatagccacaacttatgacatggatagcttctttcaaa 22
Query: 1660 agaga 1664
|||||
Sbjct: 21 agaga 17
Score = 93.7 bits (47), Expect = 4e-017
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 1110 acctccaatgacccagaactgctcattcctccaccagtcatcaattccaacaccactcca 1169
||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct: 571 acctccaatgacccagaactgttcattcctccaccactcgtcaatgccaacaccactcca 512
Query: 1170 tctcatttctaggat 1184
||||| || |||||
Sbjct: 511 cctcatctcaaggat 497
Score = 56.0 bits (28), Expect = 9e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagatt 1472
|||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 252 ccaagagcccaccggagcacttggttcagacgatctgaaagatt 209
>gb|BU995821.1|BU995821 HM11H13r HM Hordeum vulgare subsp. vulgare cDNA clone HM11H13
5-PRIME, mRNA sequence
Length = 591
Score = 129 bits (65), Expect = 8e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||||
Sbjct: 482 tgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaaccaatctca 423
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaa 1659
||||||| || | |||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 422 gttccccactcagacttgtcctcatagccacaacttatgacatggatagcttctttcaaa 363
Query: 1660 agaga 1664
|||||
Sbjct: 362 agaga 358
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1431 aagagcccaccgaagcacctggtgaagacgatctgaaagatt 1472
|||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 591 aagagcccaccggagcacttggttcagacgatctgaaagatt 550
>gb|CV061189.1|CV061189 BNEL65h6 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL65h6 5' similar to putative cellulose
synthase, mRNA sequence
Length = 590
Score = 129 bits (65), Expect = 8e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||||||
Sbjct: 223 tgcatcttgaatccagtgagaatatcttctgtgacagatccataaatccaaccaatctca 164
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaa 1659
||||||| || | |||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 163 gttccccactcagacttgtcctcatagccacaacttatgacatggatagcttctttcaaa 104
Query: 1660 agaga 1664
|||||
Sbjct: 103 agaga 99
Score = 56.0 bits (28), Expect = 9e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagatt 1472
|||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 334 ccaagagcccaccggagcacttggttcagacgatctgaaagatt 291
>gb|BF260649.2|BF260649 HVSMEf0022J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0022J05f, mRNA sequence
Length = 804
Score = 121 bits (61), Expect = 2e-025
Identities = 414/532 (77%)
Strand = Plus / Minus
Query: 2041 acataaattggaccctgaataccatccaaacctttcatgttgatatcaaaaaagacaaca 2100
||||| |||||||| ||||| ||||| ||||||||||||||||||||||| || || |
Sbjct: 638 acatacattggaccntgaatgccatctaaacctttcatgttgatatcaaagaaaactatg 579
Query: 2101 ttccggttagcatatcggtcatggcgatcaatcccatcaaatctttgagggaactgtaca 2160
|| || ||||||||||| || || |||||| |||||||||||||| || || || |||
Sbjct: 578 ttgcgattagcatatcgatcgtgcaaatcaatgccatcaaatctttgtggaaattggaca 519
Query: 2161 tagcaaaccttctttcctagtaaagggtccatcataaaacacattgcttcctttatagcc 2220
|||||| |||| ||||||| || |||||||| || ||||||||||| | | |||
Sbjct: 518 tagcaagtcttccttcctagagcgggatccatcatgaagcacattgcttctctaagagct 459
Query: 2221 ttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatggagcatttgttagt 2280
|||||| | |||| ||||||||||||||||| || | | ||| | | ||||||| |
Sbjct: 458 ttgctgctattgaagtagtgatcacaatccacattaagaagataggcaccatttgtcaac 399
Query: 2281 acagcagagactcggaccaatgcattcatagcaccagctttcttatgatggttatagcct 2340
|||||||| || || | || ||||||||| |||||||| ||||| ||||| | | |||
Sbjct: 398 acagcagatacgcgaatcagtgcattcattgcaccagccttcttgtgatgctggaaacct 339
Query: 2341 ggtcgtttctctctagaaacataaaccaatcgtggcagttcatttccctcacagtcaagg 2400
|||| || || | ||| ||||| || | ||||||| ||||| || ||| |||||||
Sbjct: 338 ggtctcttttcacgagagacatacacaagccgtggcaactcattaccatcagtgtcaagg 279
Query: 2401 cctccgctttggccaaggaagacctgaatcattccaggatgatcacgaacattgtttcca 2460
|| || || || || | ||| ||||||||||| |||||||| || | | || || |||
Sbjct: 278 ccaccactgtgccccaagaacacctgaatcatgccaggatggtccctagggttattccca 219
Query: 2461 ggccagggggttccatcttgcattgtccatccttcttcaggaactttctgggctttggca 2520
||||| | ||| ||||| ||| ||||| || ||||| || ||||| ||||||||||||
Sbjct: 218 ggccaagcggtgccatcggccatggtccacccctcttcgggcactttttgggctttggca 159
Query: 2521 actaaggcattgattctcaccttgaattcctcatactctctcttcattgctc 2572
|| | || ||||||| | || ||||| ||||||||||||||||||||||
Sbjct: 158 acaagtgcgttgattcgtattttaaattcttcatactctctcttcattgctc 107
>gb|BF255020.3|BF255020 HVSMEf0005K21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0005K21f, mRNA sequence
Length = 594
Score = 121 bits (61), Expect = 2e-025
Identities = 106/121 (87%)
Strand = Plus / Minus
Query: 1544 tcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctcttttc 1603
||||||| ||||| |||||||||||||| || |||||||| ||||| |||||||| |||
Sbjct: 366 tcttgaatccagtgagaatatcttctgtgacagatccataaatccaaccaatctcagttc 307
Query: 1604 cccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagag 1663
|||| || | |||||| ||||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 306 cccactcagacttgtcctcatagccacaacttatgacatggatagcttctttcaaaagag 247
Query: 1664 a 1664
|
Sbjct: 246 a 246
>gb|BU989992.1|BU989992 HF23J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF23J07
5-PRIME, mRNA sequence
Length = 480
Score = 119 bits (60), Expect = 8e-025
Identities = 192/236 (81%)
Strand = Plus / Minus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagattcagaggtgcagaacct 1488
||||| |||||||||||||| || | |||||||||||||| || | ||| ||||| ||
Sbjct: 323 ccaagcgcccaccgaagcacttgattcagacgatctgaaaggttgataggggcagagccc 264
Query: 1489 ttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaatgcatcttg 1548
||||| || || ||||| || ||||| ||||||||||| ||| | ||||||||||
Sbjct: 263 ttgaaagctggtcgcttaggcatacagtagattgaccgccagccacgtgcatgcatcttg 204
Query: 1549 aaaccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccag 1608
|| ||||| ||||||||||| ||||| || || ||||||||||||||||| |||||||
Sbjct: 203 aacccagtaagaatatcttccgtaacagaaccgtagatccagccaatctcccttccccaa 144
Query: 1609 tctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagaga 1664
|| | ||| ||||||||||| ||||||||||| || |||||||||| ||||||
Sbjct: 143 tcacttcggtcctcataaccacagctaatgacatggattgcttctttcagaagaga 88
>gb|CA009005.1|CA009005 HU12N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU12N24
5-PRIME, mRNA sequence
Length = 334
Score = 119 bits (60), Expect = 8e-025
Identities = 192/236 (81%)
Strand = Plus / Minus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagattcagaggtgcagaacct 1488
||||| |||||||||||||| || | |||||||||||||| || | ||| ||||| ||
Sbjct: 306 ccaagcgcccaccgaagcacttgattcagacgatctgaaaggttgataggggcagagccc 247
Query: 1489 ttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaatgcatcttg 1548
||||| || || ||||| || ||||| ||||||||||| ||| | ||||||||||
Sbjct: 246 ttgaaagctggtcgcttaggcatacagtagattgaccgccagccacgtgcatgcatcttg 187
Query: 1549 aaaccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccag 1608
|| ||||| ||||||||||| ||||| || || ||||||||||||||||| |||||||
Sbjct: 186 aacccagtaagaatatcttccgtaacagaaccgtagatccagccaatctcccttccccaa 127
Query: 1609 tctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagaga 1664
|| | ||| ||||||||||| ||||||||||| || |||||||||| ||||||
Sbjct: 126 tcacttcggtcctcataaccacagctaatgacatggattgcttctttcagaagaga 71
>gb|AV836384.1|AV836384 AV836384 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd20p06, mRNA sequence
Length = 473
Score = 117 bits (59), Expect = 3e-024
Identities = 173/211 (81%)
Strand = Plus / Minus
Query: 2041 acataaattggaccctgaataccatccaaacctttcatgttgatatcaaaaaagacaaca 2100
||||| |||||||||||||| ||||| ||||||||||||||||||||||| || || |
Sbjct: 342 acatacattggaccctgaatgccatctaaacctttcatgttgatatcaaagaaaactatg 283
Query: 2101 ttccggttagcatatcggtcatggcgatcaatcccatcaaatctttgagggaactgtaca 2160
|| || ||||||||||| || || |||||| |||||||||||||| || || || |||
Sbjct: 282 ttgcgattagcatatcgatcgtgcaaatcaatgccatcaaatctttgtggaaattggaca 223
Query: 2161 tagcaaaccttctttcctagtaaagggtccatcataaaacacattgcttcctttatagcc 2220
|||||| |||| ||||||| || |||||||| || ||||||||||| | | |||
Sbjct: 222 tagcaagtcttccttcctagagcgggatccatcatgaagcacattgcttctctaagagct 163
Query: 2221 ttgctgttgttgatgtagtgatcacaatcca 2251
|||||| | |||| |||||||||||||||||
Sbjct: 162 ttgctgctattgaagtagtgatcacaatcca 132
>gb|AL505797.1|AL505797 AL505797 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21V 5', mRNA sequence
Length = 499
Score = 105 bits (53), Expect = 1e-020
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1552 ccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccagtct 1611
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 344 ccagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccattcg 285
Query: 1612 gtcttgtcttcataaccacaactaatgacatgtatagcttc 1652
|| ||||| ||||| ||||| || |||||||| || |||||
Sbjct: 284 gttttgtcctcatatccacagctgatgacatggatggcttc 244
>gb|BG343963.1|BG343963 HVSMEg0007D23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007D23f, mRNA sequence
Length = 786
Score = 105 bits (53), Expect = 1e-020
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1552 ccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccagtct 1611
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 324 ccagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccattcg 265
Query: 1612 gtcttgtcttcataaccacaactaatgacatgtatagcttc 1652
|| ||||| ||||| ||||| || |||||||| || |||||
Sbjct: 264 gttttgtcctcatatccacagctgatgacatggatggcttc 224
Score = 56.0 bits (28), Expect = 9e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1120 acccagaactgctcattcctccaccagtcatcaattccaacaccactccatc 1171
|||||||||||||| || ||||||||||| || || || |||||||||||||
Sbjct: 758 acccagaactgctcgtttctccaccagtcctcgatgccgacaccactccatc 707
>gb|BI948889.1|BI948889 HVSMEl0011E15f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0011E15f, mRNA sequence
Length = 807
Score = 105 bits (53), Expect = 1e-020
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1552 ccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccagtct 1611
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 132 ccagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccattcg 73
Query: 1612 gtcttgtcttcataaccacaactaatgacatgtatagcttc 1652
|| ||||| ||||| ||||| || |||||||| || |||||
Sbjct: 72 gttttgtcctcatatccacagctgatgacatggatggcttc 32
>gb|BF263370.1|BF263370 HV_CEa0006J03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006J03f, mRNA sequence
Length = 848
Score = 105 bits (53), Expect = 1e-020
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1552 ccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccagtct 1611
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 441 ccagtaagaatatcttcagtaactgaaccatagatccagccaatctcttttccccattcg 382
Query: 1612 gtcttgtcttcataaccacaactaatgacatgtatagcttc 1652
|| ||||| ||||| ||||| || |||||||| || |||||
Sbjct: 381 gttttgtcctcatatccacagctgatgacatggatggcttc 341
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 434,192
Number of Sequences: 312970
Number of extensions: 434192
Number of successful extensions: 126376
Number of sequences better than 0.5: 163
Number of HSP's better than 0.5 without gapping: 162
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 125909
Number of HSP's gapped (non-prelim): 381
length of query: 4065
length of database: 175,134,539
effective HSP length: 20
effective length of query: 4045
effective length of database: 168,875,139
effective search space: 683099937255
effective search space used: 683099937255
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)