BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738955.2.1
(1271 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 702 0.0
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 670 0.0
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 632 e-180
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 539 e-152
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 521 e-146
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 504 e-141
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 502 e-140
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 484 e-135
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 478 e-133
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 458 e-127
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 446 e-124
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 434 e-120
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 424 e-117
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 406 e-112
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 392 e-107
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 379 e-103
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 379 e-103
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 373 e-101
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 359 1e-097
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 347 6e-094
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 335 2e-090
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 333 8e-090
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 333 8e-090
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 317 5e-085
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 289 1e-076
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 287 4e-076
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 287 4e-076
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 287 4e-076
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 287 4e-076
gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachi... 280 1e-073
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 272 3e-071
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 262 3e-068
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 260 1e-067
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 258 4e-067
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 250 1e-064
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 248 4e-064
gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachi... 248 4e-064
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 248 4e-064
gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. v... 246 2e-063
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 232 2e-059
gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachi... 196 1e-048
gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. v... 196 1e-048
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 188 3e-046
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 188 3e-046
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 188 3e-046
gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedl... 180 7e-044
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 180 7e-044
gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA li... 172 2e-041
gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots... 170 7e-041
gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike... 163 2e-038
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 161 7e-038
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 161 7e-038
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 161 7e-038
gb|BU999110.1|BU999110 HI13E18r HI Hordeum vulgare subsp. v... 161 7e-038
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 145 4e-033
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 139 3e-031
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 139 3e-031
gb|CA001586.1|CA001586 HS17G02u HS Hordeum vulgare subsp. v... 139 3e-031
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 131 6e-029
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 129 2e-028
gb|CA029290.1|CA029290 HZ64M12r HZ Hordeum vulgare subsp. v... 129 2e-028
gb|BI957544.1|BI957544 HVSMEn0010B08f Hordeum vulgare rachi... 127 1e-027
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 111 6e-023
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 111 6e-023
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 107 9e-022
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 107 9e-022
gb|CA020099.1|CA020099 HV14F10r HV Hordeum vulgare subsp. v... 107 9e-022
gb|BF257377.2|BF257377 HVSMEf0012L15f Hordeum vulgare seedl... 105 4e-021
gb|BF622348.3|BF622348 HVSMEa0002O10f Hordeum vulgare seedl... 103 1e-020
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 103 1e-020
gb|BF625307.2|BF625307 HVSMEa0008F17f Hordeum vulgare seedl... 101 6e-020
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 100 2e-019
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 100 2e-019
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 100 2e-019
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 100 2e-019
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 96 3e-018
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 90 2e-016
gb|AL508683.1|AL508683 AL508683 Hordeum vulgare Barke devel... 88 8e-016
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 88 8e-016
gb|AV916437.1|AV916437 AV916437 K. Sato unpublished cDNA li... 88 8e-016
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 88 8e-016
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 88 8e-016
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 88 8e-016
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 84 1e-014
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 84 1e-014
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 82 5e-014
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 78 8e-013
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 76 3e-012
gb|CA006089.1|CA006089 HU05D17u HU Hordeum vulgare subsp. v... 76 3e-012
gb|AV917957.1|AV917957 AV917957 K. Sato unpublished cDNA li... 70 2e-010
gb|CA016704.1|CA016704 HV06N05u HV Hordeum vulgare subsp. v... 70 2e-010
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 66 3e-009
gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. v... 66 3e-009
gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. v... 66 3e-009
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 64 1e-008
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 64 1e-008
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 64 1e-008
gb|BQ663826.1|BQ663826 HU04D11u HU Hordeum vulgare subsp. v... 58 7e-007
gb|AL511857.1|AL511857 AL511857 Hordeum vulgare Barke devel... 48 7e-004
gb|AJ461688.1|AJ461688 AJ461688 S00002 Hordeum vulgare subs... 48 7e-004
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 46 0.003
gb|BI947132.1|BI947132 HVSMEl0003N16f Hordeum vulgare spike... 40 0.17
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 702 bits (354), Expect = 0.0
Identities = 508/557 (91%), Gaps = 2/557 (0%)
Strand = Plus / Minus
Query: 573 gttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgctggagcc 632
|||||||||||||||| |||||||||||||||||||| ||||| ||||||| | |||
Sbjct: 728 gttgctctgccagttcatgccccagttgcgggacatggcttgccagccggtgcgcgtgcc 669
Query: 633 cttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggtt 692
|||||| ||||||| || |||| ||||||||| |||||||||||||||||||||||||
Sbjct: 668 tttgatgaacacggagcgcgcgtcgccggcgccgnccacgttggtcaccagcaccaggtt 609
Query: 693 gaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccct 752
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 608 gaagtaggagtggccgttgatggtgaaccggatgccccccttcttcacgcacggcaccct 549
Query: 753 cctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctg 812
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 548 tctgtaggagacgggtacgatgccggcgcggtactgcgcgatgtggaggaaggccggctc 489
Query: 813 ggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggcc 872
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggccatgtcgaagtgggggcgcggcgggttgcaccagccgccgtcgtcgctggggaggcc 429
Query: 873 gtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga-ct 931
||||||||||||||||||||||||||| || || |||||| |||||| ||||||| ||
Sbjct: 428 gtagttgggcgggcagaagttggtggcggtcaccatgatggaccccggccggcacgagct 369
Query: 932 gcccgttgttgtcgcagcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaaca 991
| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 368 g-ccggcgttgtcgcagcgcagctcgtagcacgacccgcacgccgcgccgtcgttgaaca 310
Query: 992 gcgccgtgctcagcgccgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagc 1051
||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |
Sbjct: 309 gcgccgtgctcagcgccgccgtgttcgtgccgtacccagtgctgtacaggttaccgtacc 250
Query: 1052 cgcacgcgccgcccatcgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgc 1111
||||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||
Sbjct: 249 cgcacgccccgcccatcgtgccggaggcgtcgccgccgccgtagaaggtggcatgggcgc 190
Query: 1112 tctgccacgagccgtag 1128
|||||||| |||||||
Sbjct: 189 tctgccacccgccgtag 173
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 670 bits (338), Expect = 0.0
Identities = 463/502 (92%), Gaps = 2/502 (0%)
Strand = Plus / Minus
Query: 573 gttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgctggagcc 632
|||||||||||||||| |||||||||||||||||||| |||||| ||||||| | |||
Sbjct: 510 gttgctctgccagttcatgccccagttgcgggacatggcctgccagccggtgcgcgtgcc 451
Query: 633 cttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggtt 692
||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct: 450 cttgatggacacggagcgcgcgtcgccggcgccggccacgttggtcaccagcaccaggtt 391
Query: 693 gaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccct 752
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 390 gaagtaggagtggccgttgatggtgaaccggatgccccccttcttcacgcacggcaccct 331
Query: 753 cctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctg 812
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 330 tctgtaggagacgggtacgatgccggcgcggtactgcgcgatgtggaggaaggccggctc 271
Query: 813 ggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggcc 872
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggccatgtcgaagtgggggcgcggcgggttgcaccagccgccgtcgtcgctggggaggcc 211
Query: 873 gtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga-ct 931
||||||||||||||||||||||||||| || || |||||| |||||| ||||||| ||
Sbjct: 210 gtagttgggcgggcagaagttggtggcggtcaccatgatggaccccggccggcacgagct 151
Query: 932 gcccgttgttgtcgcagcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaaca 991
| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 150 g-ccggcgttgtcgcagcgcagctcgtagcacgacccgcacgccgcgccgtcgttgaaca 92
Query: 992 gcgccgtgctcagcgccgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagc 1051
||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |
Sbjct: 91 gcgccgtgctcagcgccgccgtgttcgtgccgtacccagtgctgtacaggttaccgtacc 32
Query: 1052 cgcacgcgccgcccatcgtgcc 1073
||||||| ||||||||||||||
Sbjct: 31 cgcacgccccgcccatcgtgcc 10
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 632 bits (319), Expect = e-180
Identities = 500/555 (90%), Gaps = 4/555 (0%)
Strand = Plus / Minus
Query: 575 tgctctgccagttctggccccagttgcgggacatgggctgccacccggtgctggagccct 634
||||||||||| || ||||||| |||||||||||| ||| || |||||| | |||||
Sbjct: 724 tgctctgccaggtcaagccccaggtgcgggacatgg-ctgacagccggtgggtgtgccct 666
Query: 635 tgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggttga 694
|||||||| |||| || |||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 665 tgatggac-cggagcgcgcgtccccggcgccggccacgttggtcaccagccccaggttta 607
Query: 695 agtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcc 754
||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| |
Sbjct: 606 agtaggagtggccgttgatggtgaaccggatgccccctttcttcacgcacggcacccttc 547
Query: 755 tgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctggg 814
|||||| || ||| ||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct: 546 tgtaggagaggggtacgatgccggcccggtactgcgcgatgtggaggaaggccggctcgg 487
Query: 815 ccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgt 874
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccatgtctaagtgggggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgt 427
Query: 875 agttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga-ctgc 933
||||||||||||||||||||||||| || || |||||| |||||| ||||||| |||
Sbjct: 426 agttgggcgggcagaagttggtggcggtcaccatgatggaccccggccggcacgagctg- 368
Query: 934 ccgttgttgtcgcagcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaacagc 993
||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 367 ccggcgttgtcgcagcgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagc 308
Query: 994 gccgtgctcagcgccgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagccg 1053
||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |||
Sbjct: 307 gccgtgctcagcgccgccgtgttcgtgccgtacccagtgctgtacaggttaccgtacccg 248
Query: 1054 cacgcgccgcccatcgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctc 1113
||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct: 247 cacgccccgcccatcgtgccggaggcgtcgccgccgccgtagaaggtggcatgggcgctc 188
Query: 1114 tgccacgagccgtag 1128
|||||| |||||||
Sbjct: 187 tgccacccgccgtag 173
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 539 bits (272), Expect = e-152
Identities = 431/484 (89%)
Strand = Plus / Minus
Query: 446 gctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgt 505
||||||||||| | || ||||||||||| || || |||||| ||||| ||| || ||
Sbjct: 517 gctagaactggcctccttcgaaggtctgtccaaaggaccagccggccggggcggcgttgt 458
Query: 506 tgctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcga 565
|||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 457 tgctggtgacggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcga 398
Query: 566 ggagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgc 625
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 397 ggtccgcgttgctctgccagttctggccccagttgcgggacatggcctgccacccggagc 338
Query: 626 tggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagca 685
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 337 tggaccccttgatggagacggactgcacgtcgccggcgccggccacgttggtcacaagca 278
Query: 686 ccaggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacg 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 277 ccaggttgaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagg 218
Query: 746 gcaccctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaagg 805
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 217 gcaccctccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtagg 158
Query: 806 ccggctgggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctgg 865
| |||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct: 157 cgggctctgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgg 98
Query: 866 ggaggccgtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggc 925
| || |||||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||
Sbjct: 97 gcagcgcgtagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgc 38
Query: 926 acga 929
||||
Sbjct: 37 acga 34
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 521 bits (263), Expect = e-146
Identities = 416/467 (89%)
Strand = Plus / Plus
Query: 446 gctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgt 505
||||||||||| | || ||||||||||| || || |||||| ||||| ||| || ||
Sbjct: 250 gctagaactggcctccttcgaaggtctgtccaaaggaccagccggccggggcggcgttgt 309
Query: 506 tgctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcga 565
|||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 310 tgctggtgacggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcga 369
Query: 566 ggagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgc 625
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 370 ggtccgcgttgctctgccagttctggccccagttgcgggacatggcctgccacccggagc 429
Query: 626 tggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagca 685
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 430 tggaccccttgatggagacggactgcacgtcgccggcgccggccacgttggtcacaagca 489
Query: 686 ccaggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacg 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 490 ccaggttgaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagg 549
Query: 746 gcaccctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaagg 805
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 550 gcaccctccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtagg 609
Query: 806 ccggctgggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctgg 865
| |||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct: 610 cgggctctgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgg 669
Query: 866 ggaggccgtagttgggcgggcagaagttggtggccgtgacggtgatg 912
| || |||||||||||||||| | ||||||||| |||| |||||||
Sbjct: 670 gcagcgcgtagttgggcgggcaaaggttggtggcggtgatggtgatg 716
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 314 agagaaggaaatgcctaagcgggtgctaataataagcagcctcggaat 361
||||||||||| ||||||||||||||| || | ||||||||| ||||
Sbjct: 99 agagaaggaaaggcctaagcgggtgctgatcagcagcagcctcagaat 146
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 504 bits (254), Expect = e-141
Identities = 395/442 (89%)
Strand = Plus / Minus
Query: 446 gctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgt 505
||||||||||| | || ||||||||||| || || |||||| ||||| ||| || ||
Sbjct: 455 gctagaactggcctccttcgaaggtctgtccaaaggaccagccggccggggcggcgttgt 396
Query: 506 tgctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcga 565
|||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 395 tgctggtgacggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcga 336
Query: 566 ggagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgc 625
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 335 ggtccgcgttgctctgccagttctggccccagttgcgggacatggcctgccacccggagc 276
Query: 626 tggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagca 685
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 275 tggaccccttgatggagacggactgcacgtcgccggcgccggccacgttggtcacaagca 216
Query: 686 ccaggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacg 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 215 ccaggttgaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagg 156
Query: 746 gcaccctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaagg 805
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 155 gcaccctccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtagg 96
Query: 806 ccggctgggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctgg 865
| |||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct: 95 cgggctctgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgg 36
Query: 866 ggaggccgtagttgggcgggca 887
| || ||||||||||||||||
Sbjct: 35 gcagcgcgtagttgggcgggca 14
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 314 agagaaggaaatgcctaagcgggtgctaataataagcagcctcggaat 361
||||||||||| ||||||||||||||| || | ||||||||| ||||
Sbjct: 606 agagaaggaaaggcctaagcgggtgctgatcagcagcagcctcagaat 559
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 502 bits (253), Expect = e-140
Identities = 394/441 (89%)
Strand = Plus / Minus
Query: 446 gctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgt 505
||||||||||| | || ||||||||||| || || |||||| ||||| ||| || ||
Sbjct: 441 gctagaactggcctccttcgaaggtctgtccaaaggaccagccggccggggcggcgttgt 382
Query: 506 tgctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcga 565
|||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 381 tgctggtgacggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcga 322
Query: 566 ggagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgc 625
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 321 ggtccgcgttgctctgccagttctggccccagttgcgggacatggcctgccacccggagc 262
Query: 626 tggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagca 685
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 261 tggaccccttgatggagacggactgcacgtcgccggcgccggccacgttggtcacaagca 202
Query: 686 ccaggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacg 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 201 ccaggttgaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagg 142
Query: 746 gcaccctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaagg 805
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 141 gcaccctccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtagg 82
Query: 806 ccggctgggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctgg 865
| |||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct: 81 cgggctctgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgg 22
Query: 866 ggaggccgtagttgggcgggc 886
| || |||||||||||||||
Sbjct: 21 gcagcgcgtagttgggcgggc 1
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 484 bits (244), Expect = e-135
Identities = 339/368 (92%), Gaps = 2/368 (0%)
Strand = Plus / Minus
Query: 762 gacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtc 821
|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 518 gacgggtacgatgccggcgcggtactgcgcgatgtggaggaaggccggctcggccatgtc 459
Query: 822 gaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttggg 881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaagtgggggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttggg 399
Query: 882 cgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga-ctgcccgttgt 940
|||||||||||||||||| || || |||||| |||||| ||||||| ||||| | ||
Sbjct: 398 cgggcagaagttggtggcggtcaccatgatggaccccggccggcacgagctgccggc-gt 340
Query: 941 tgtcgcagcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgc 1000
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 339 tgtcgcagcgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgc 280
Query: 1001 tcagcgccgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgc 1060
|||||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||||| |
Sbjct: 279 tcagcgccgccgtgttcgtgccgtacccagtgctgtacaggttaccgtacccgcacgccc 220
Query: 1061 cgcccatcgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacg 1120
||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 219 cgcccatcgtgccggaggcgtcgccgccgccgtagaaggtggcatgggcgctctgccacc 160
Query: 1121 agccgtag 1128
|||||||
Sbjct: 159 cgccgtag 152
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 478 bits (241), Expect = e-133
Identities = 340/373 (91%)
Strand = Plus / Minus
Query: 447 ctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgtt 506
|||||||||||||||||||||||||||||||||||||||||| || || ||| || ||||
Sbjct: 373 ctagaactgggcgccctcgaaggtctggccgaactgccagccggcgggcgcggcggcgtt 314
Query: 507 gctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgag 566
|||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| ||
Sbjct: 313 gctggtgacggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccag 254
Query: 567 gagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgct 626
|| | |||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 253 gaaggtgttgctctgccagttcatgccccagttgcgggacatggcctgccagccggtgcg 194
Query: 627 ggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcac 686
| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 193 cgtgcccttgatggacacggagcgcgcgtcgccggcgccggccacgttggtcaccagcac 134
Query: 687 caggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacgg 746
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 133 caggttgaagtaggagtggccgttgatggtgaaccggatgccccccttcttcacgcacgg 74
Query: 747 caccctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggc 806
|||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 73 cacccttctgtaggagacgggtacgatgccggcgcggtactgcgcgatgtggaggaaggc 14
Query: 807 cggctgggccatg 819
||||| |||||||
Sbjct: 13 cggctcggccatg 1
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 458 bits (231), Expect = e-127
Identities = 357/399 (89%)
Strand = Plus / Minus
Query: 447 ctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgtt 506
||||||||||||||||| ||||||||||| ||||||||||| || || || || ||||
Sbjct: 399 ctagaactgggcgccctagaaggtctggcgaaactgccagccggcgggcccggcggcgtt 340
Query: 507 gctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgag 566
|||||||||||| ||||||||||||| ||||||| |||||| |||| ||||||||| ||
Sbjct: 339 gctggtgacggttcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccag 280
Query: 567 gagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgct 626
|| | | |||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 279 gaaggtgatgctctgccagttcatgccccagttgcgggacatggcctgccagccggtgcg 220
Query: 627 ggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcac 686
| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 219 cgtgcccttgatggacacggagcgcgcgtcgccggcgccggccacgttggtcaccagcac 160
Query: 687 caggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacgg 746
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 159 caggttgaagtaggagtggccgttgatggtgaaccggatgccccccttcttcacgcacgg 100
Query: 747 caccctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggc 806
|||||| ||||||| ||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct: 99 cacccttctgtaggaaacgggtacgatgccggcgcggtactgcccgatgtggaggaaggc 40
Query: 807 cggctgggccatgtcgaagtgcgggcgcggcgggttgca 845
||||| ||||||||||||||| |||||||||||||||||
Sbjct: 39 cggctcggccatgtcgaagtgggggcgcggcgggttgca 1
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 446 bits (225), Expect = e-124
Identities = 324/357 (90%)
Strand = Plus / Minus
Query: 573 gttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgctggagcc 632
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct: 533 gttgctctgccagttctggccccagttgcgggacatggcctgccacccggagctggaccc 474
Query: 633 cttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggtt 692
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 473 cttgatggagacggactgcacgtcgccggcgccggccacgttggtcacaagcaccaggtt 414
Query: 693 gaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccct 752
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 413 gaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagggcaccct 354
Query: 753 cctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctg 812
|| ||||| ||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct: 353 ccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtaggcgggctc 294
Query: 813 ggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggcc 872
|||||||||||||| | ||||||||||||||||||||||||||||||| |||| || |
Sbjct: 293 tgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgggcagcgc 234
Query: 873 gtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
||||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 233 gtagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 177
Score = 234 bits (118), Expect = 6e-060
Identities = 139/146 (95%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 160 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 101
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 100 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 41
Query: 1072 ccagacgcgtcgccgccgccgtagaa 1097
|| |||||||||||||||||||||||
Sbjct: 40 ccggacgcgtcgccgccgccgtagaa 15
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 434 bits (219), Expect = e-120
Identities = 322/357 (90%)
Strand = Plus / Minus
Query: 573 gttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgctggagcc 632
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct: 428 gttgctctgccagttctggccccagttgcgggacatggcctgccacccggagctggaccc 369
Query: 633 cttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggtt 692
||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct: 368 cttgatggagacggactgcacgtcgccggcgccggccacgttggtcncaagcaccaggtt 309
Query: 693 gaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccct 752
|||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 308 gaagtaggagtggccgttgatggtgaacctcatnccgcccttcttcacacagggcaccct 249
Query: 753 cctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctg 812
|| ||||| ||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct: 248 ccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtaggcgggctc 189
Query: 813 ggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggcc 872
|||||||||||||| | ||||||||||||||||||||||||||||||| |||| || |
Sbjct: 188 tgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgggcagcgc 129
Query: 873 gtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
||||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 128 gtagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 72
Score = 79.8 bits (40), Expect = 2e-013
Identities = 53/56 (94%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgc 1007
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 55 agctcgtagcacgacccgcacgccgcgccgtcgtt-aacagcgccgtgctcagcgc 1
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 424 bits (214), Expect = e-117
Identities = 326/361 (90%), Gaps = 2/361 (0%)
Strand = Plus / Minus
Query: 769 acgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgc 828
||||||||||| |||||||||||||| || ||||||||||||| ||||||||| |||||
Sbjct: 532 acgatgccggcccggtactgcgcgatgtgaaggaaggccggctcggccatgtcaaagtgg 473
Query: 829 gggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcag 888
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 472 gggcgcggcgggttgcaccacccgccgtcgtcgctgggnagcccgtagttgggcgggcag 413
Query: 889 aagttggtggccgtgacggtgatggtgcccggcaggcacga-ctgcccgttgttgtcgca 947
||||||||||| || || |||||| |||| | ||||||| ||||| | |||||||||
Sbjct: 412 aagttggtggcggtcaccatgatggaccccgcccggcacgagctgccggc-gttgtcgca 354
Query: 948 gcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgc 1007
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 353 gcgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgc 294
Query: 1008 cgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccat 1067
||||||||| ||||||||||| |||||||||| ||| ||||| |||||||| ||||||||
Sbjct: 293 cgccgtgttcgtgccgtacccagtgctgtacaggttaccgtacccgcacgccccgcccat 234
Query: 1068 cgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgta 1127
|||||| || |||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 233 cgtgccggaggcgtcgccgccgccgtagaaggtggcatgggcgctctgccacccgccgta 174
Query: 1128 g 1128
|
Sbjct: 173 g 173
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 406 bits (205), Expect = e-112
Identities = 352/397 (88%), Gaps = 3/397 (0%)
Strand = Plus / Minus
Query: 534 ggtgacctggaaggacaggctctggccgtcgaggagcgagttgctctgccagttctggcc 593
||||||||| ||||| |||||||| ||||||||| || ||||||||||||||| |||||
Sbjct: 510 ggtgacctgaaaggagaggctctgaccgtcgaggtccgcgttgctctgccagttatggcc 451
Query: 594 ccagttgcggga-catgggctgccacccggtgctggagcccttgatggacacggactgca 652
||| |||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 450 cca-ttgcgggaacatggcttgccacccggagctggaccccttgatggagacggactgca 392
Query: 653 cgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccgttga 712
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 391 cgtcgccggcgccggccacgttggtcacaagcaccaggttgaagtaggagtggccgttga 332
Query: 713 tggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggcacga 772
|||||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||||
Sbjct: 331 tggtgaacctcatcccgcccttcttcacacagggcaccctccggtaggaaacgggcacga 272
Query: 773 tgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgcgggc 832
||||||||||||| ||||||||||| |||| |||| |||||||||||||| | ||
Sbjct: 271 tgccggcgcggtagataccgatctggaggtaggcgggctctgccatgtcgaagtgggcgc 212
Query: 833 gcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagt 892
|||||||||||||||||||||||||||| || | || |||||||||||||||| | ||
Sbjct: 211 gcggcgggttgcaccagccgccgtcgtc-ctccgcagcgcgtagttgggcgggcaaaggt 153
Query: 893 tggtggccgtgacggtgatggtgcccggcaggcacga 929
||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 152 tggtggcggtgatggtgatgctgcccggcacgcacga 116
Score = 127 bits (64), Expect = 1e-027
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 99 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 40
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccg 1047
||||| || ||| | || |||||||||| |||||||
Sbjct: 39 gtgttcgtcccgcaacctgtgctgtacaggttcccg 4
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 392 bits (198), Expect = e-107
Identities = 366/418 (87%), Gaps = 3/418 (0%)
Strand = Plus / Minus
Query: 513 gacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgaggagcga 572
|||||| ||||| ||||| ||||||| | ||| |||| ||||||||||||| | ||
Sbjct: 512 gacggttcggccttcgctaagggtgacccgaaagaacagcctctggccgtcgaagtccgc 453
Query: 573 -gttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgctggagc 631
|||||| |||||||||||||||||||||||||||| || || |||||||| |||||| |
Sbjct: 452 cgttgctttgccagttctggccccagttgcgggacagggcct-ccacccggagctgga-c 395
Query: 632 ccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggt 691
|||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 394 cctttatggagacggactgcacgtcgccggcgccggccacgttggtcacaagcaccaggt 335
Query: 692 tgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccc 751
| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 334 taaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagggcaccc 275
Query: 752 tcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggct 811
||| ||||| ||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct: 274 tccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtaggcgggct 215
Query: 812 gggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggc 871
|||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||
Sbjct: 214 ctgccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgggcagcg 155
Query: 872 cgtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 154 cgtagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 97
Score = 119 bits (60), Expect = 2e-025
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 80 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgct 21
Query: 1012 gtgttggtgccgtaccccgt 1031
||||| |||||||| |||||
Sbjct: 20 gtgttcgtgccgtaacccgt 1
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 379 bits (191), Expect = e-103
Identities = 320/359 (89%), Gaps = 3/359 (0%)
Strand = Plus / Minus
Query: 573 gttgctctgcc-agttctggccccagttgcggg-acatgggctgccacccggtgctggag 630
||||||||||| ||||||| ||||||| ||||| |||||| ||||||||||| ||||||
Sbjct: 667 gttgctctgcccagttctgaccccagt-gcgggcacatggcctgccacccggagctggac 609
Query: 631 cccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccagg 690
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 608 cccttgatggagacggactgcacgtcgccggcgccggccacgttggtcaccagcaccagg 549
Query: 691 ttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcacc 750
|||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 548 ttgaagtaggagtggccgttaatggtgaaccttatccctcccttcttcacacagggcacc 489
Query: 751 ctcctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggc 810
|||| ||||| ||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct: 488 ctccggtaggaaacgggcacgatgccggcgcggtagataccgatctggaggtaggctggc 429
Query: 811 tgggccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggagg 870
| |||||||||| |||| | |||||| |||||||||||||||||||||||| |||| ||
Sbjct: 428 tcggccatgtcgcagtgtgcgcgcggtgggttgcaccagccgccgtcgtcgttgggcagc 369
Query: 871 ccgtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||||||||||||||||| |||||| || |||| ||||||| ||||||||| ||||||
Sbjct: 368 gcgtagttgggcgggcagaggttggtagcggtgatggtgatgctgcccggcacgcacga 310
Score = 280 bits (141), Expect = 1e-073
Identities = 177/189 (93%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 293 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 234
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 233 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 174
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 173 ccggacgcgtcgccgccgccgtagaaggtggcgtgtgcggtctgccacgagccgtagtcg 114
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 113 ccggcggcc 105
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 379 bits (191), Expect = e-103
Identities = 278/307 (90%)
Strand = Plus / Minus
Query: 446 gctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgt 505
||||||||||| | || ||||||||||| || || |||||| ||||| ||| || ||
Sbjct: 319 gctagaactggcctccttcgaaggtctgtccaaaggaccagccggccggggcggcgttgt 260
Query: 506 tgctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcga 565
|||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 259 tgctggtgacggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcga 200
Query: 566 ggagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgc 625
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 199 ggtccgcgttgctctgccagttctggccccagttgcgggacatggcctgccacccggagc 140
Query: 626 tggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagca 685
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 139 tggaccccttgatggagacggactgcacgtcgccggcgccggccacgttggtcacaagca 80
Query: 686 ccaggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacg 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct: 79 ccaggttgaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagg 20
Query: 746 gcaccct 752
|||||||
Sbjct: 19 gcaccct 13
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 314 agagaaggaaatgcctaagcgggtgctaataataagcagcctcggaat 361
||||||||||| ||||||||||||||| || | ||||||||| ||||
Sbjct: 470 agagaaggaaaggcctaagcgggtgctgatcagcagcagcctcagaat 423
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 373 bits (188), Expect = e-101
Identities = 253/272 (93%), Gaps = 2/272 (0%)
Strand = Plus / Minus
Query: 754 ctgtaggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctgg 813
||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 271 ctgtaggagacgggtacgatgccggcgcggtactgcgcgatgtggaggaaggccggctcg 212
Query: 814 gccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccg 873
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gccatgtcgaagtgggggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccg 152
Query: 874 tagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga-ctg 932
|||||||||||||||||||||||||| || || |||||| |||||| ||||||| |||
Sbjct: 151 tagttgggcgggcagaagttggtggcggtcaccatgatggaccccggccggcacgagctg 92
Query: 933 cccgttgttgtcgcagcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaacag 992
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 91 -ccggcgttgtcgcagcgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacag 33
Query: 993 cgccgtgctcagcgccgccgtgttggtgccgt 1024
|||||||||||||||||||||||| |||||||
Sbjct: 32 cgccgtgctcagcgccgccgtgttcgtgccgt 1
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 359 bits (181), Expect = 1e-097
Identities = 265/293 (90%)
Strand = Plus / Plus
Query: 447 ctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgtt 506
|||||||||||||||||||||||||||||||||||||||||| || || ||| || ||||
Sbjct: 409 ctagaactgggcgccctcgaaggtctggccgaactgccagccggcgggcgcggcggcgtt 468
Query: 507 gctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgag 566
|||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| ||
Sbjct: 469 gctggtgacggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccag 528
Query: 567 gagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgct 626
|| | |||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 529 gaaggtgttgctctgccagttcatgccccagttgcgggacatggcctgccagccggtgcg 588
Query: 627 ggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcac 686
| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 589 cgtgcccttgatggacacggagcgcgcgtcgccggcgccggccacgttggtcaccagcac 648
Query: 687 caggttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttca 739
||||||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 649 caggttgaagtaggagtggccgttgatggtgaaccggatgccccccttcttca 701
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 347 bits (175), Expect = 6e-094
Identities = 320/362 (88%), Gaps = 5/362 (1%)
Strand = Plus / Minus
Query: 573 gttgctctgccagttctggcccc-agttgcgggacatgggctgcc-acccggtgct-gga 629
||||||||||||||||||||||| |||||||| |||||| || || |||||| ||| |||
Sbjct: 596 gttgctctgccagttctggcccccagttgcggaacatggccttcccacccggagcttgga 537
Query: 630 gcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccag 689
||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 536 ccccttgatgnagacggactgcacgtcgccggcgccggccacgttggtcacaagcaccag 477
Query: 690 gttgaagtaggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcac 749
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 476 gttgaagtaggagtggccgttgatggtgaacctcatcccgcccttcttcacacagggcac 417
Query: 750 cctcctgtaggcgacgggcacgatgccggcgc-ggtactgcgcgatctggaggaaggccg 808
||||| ||||| ||||||||||||||||||| |||| ||||||||||| |||| |
Sbjct: 416 cctccggtaggaaacgggcacgatgccggcgcgggtagataccgatctggaggtaggcgg 357
Query: 809 gctgggccatgtcgaagtgcgggcgcggcgggttgcaccagccgc-cgtcgtcgctgggg 867
||| |||||||||||||| | ||||||||||||||||||||||| ||||||| ||||
Sbjct: 356 gctctgccatgtcgaagtgggcgcgcggcgggttgcaccagccgctggtcgtcgttgggc 297
Query: 868 aggccgtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcac 927
|| |||||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||
Sbjct: 296 agcgcgtagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcac 237
Query: 928 ga 929
||
Sbjct: 236 ga 235
Score = 287 bits (145), Expect = 4e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 218 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 159
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 158 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 99
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 98 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 39
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 38 ccggcggcc 30
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 335 bits (169), Expect = 2e-090
Identities = 262/293 (89%)
Strand = Plus / Minus
Query: 637 atggacacggactgcacgtccccggcgccggccacgttggtcaccagcaccaggttgaag 696
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 625 atggagacggactgcacgtcgccggcgccggccacgttggtcacaagcaccaggttaaag 566
Query: 697 taggagtggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctg 756
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
Sbjct: 565 taggagtggccgttgatggtgaacctcatcccgcccttcttcacacagggcaccctccgg 506
Query: 757 taggcgacgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctgggcc 816
|||| ||||||||||||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 505 taggaaacgggcacgatgccggcgcggtagataccgatctggaggtaggcgggctctgcc 446
Query: 817 atgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtag 876
||||||||||| | ||||||||||||||||||||||||||||||| |||| || |||||
Sbjct: 445 atgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgggcagcgcgtag 386
Query: 877 ttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 385 ttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 333
Score = 287 bits (145), Expect = 4e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 316 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 257
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 256 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 197
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 196 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 137
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 136 ccggcggcc 128
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 333 bits (168), Expect = 8e-090
Identities = 252/280 (90%)
Strand = Plus / Minus
Query: 473 ggccgaactgccagcccgccggagcgacgccgttgctggtgacggtgcggccgtcgctgg 532
|||||||||||||||| || || ||| || ||||||||||||||||||||||||||||||
Sbjct: 536 ggccgaactgccagccggcgggcgcggcggcgttgctggtgacggtgcggccgtcgctgg 477
Query: 533 cggtgacctggaaggacaggctctggccgtcgaggagcgagttgctctgccagttctggc 592
||||||| |||||| |||| ||||||||| |||| | |||||||||||||||| ||
Sbjct: 476 aggtgaccctgaaggagaggcactggccgtccaggaaggtgttgctctgccagttcatgc 417
Query: 593 cccagttgcgggacatgggctgccacccggtgctggagcccttgatggacacggactgca 652
|||||||||||||||||| |||||| ||||||| | |||||||||||||||||| ||
Sbjct: 416 cccagttgcgggacatggcctgccagccggtgcgcgtgcccttgatggacacggagcgcg 357
Query: 653 cgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccgttga 712
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cgtcgccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccgttga 297
Query: 713 tggtgaacctgatcccgcccttcttcacgcacggcaccct 752
||||||||| ||| || |||||||||||||||||||||||
Sbjct: 296 tggtgaaccggatgccccccttcttcacgcacggcaccct 257
>gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D12
5-PRIME, mRNA sequence
Length = 475
Score = 333 bits (168), Expect = 8e-090
Identities = 243/268 (90%)
Strand = Plus / Minus
Query: 447 ctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgtt 506
|||||||||||||||||||||||||||||||||||||||||| || || ||| || ||||
Sbjct: 278 ctagaactgggcgccctcgaaggtctggccgaactgccagccggcgggcgcggcggcgtt 219
Query: 507 gctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgag 566
|||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| ||
Sbjct: 218 gctggtgacggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccag 159
Query: 567 gagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgct 626
|| | |||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 158 gaaggtgttgctctgccagttcatgccccagttgcgggacatggcctgccagccggtgcg 99
Query: 627 ggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtcaccagcac 686
| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 98 cgtgcccttgatggacacggagcgcgcgtcgccggcgccggccacgttggtcaccagcac 39
Query: 687 caggttgaagtaggagtggccgttgatg 714
||||||||||||||||||||||||||||
Sbjct: 38 caggttgaagtaggagtggccgttgatg 11
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 317 bits (160), Expect = 5e-085
Identities = 250/280 (89%)
Strand = Plus / Minus
Query: 650 gcacgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccgt 709
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcacgtcgccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccgt 531
Query: 710 tgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggca 769
| ||||||||||| ||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 530 taatggtgaaccttatccctcccttcttcacacagggcaccctccggtaggaaacgggca 471
Query: 770 cgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgcg 829
|||||||||||||||| ||||||||||| |||| |||| ||||||||||||||| |
Sbjct: 470 cgatgccggcgcggtagataccgatctggaggtaggctggctcggccatgtcgaagtgtg 411
Query: 830 ggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcaga 889
|||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 410 cgcgcggtgggttgcaccagccgccgtcgtcgttgggcagcgcgtagttgggcgggcaga 351
Query: 890 agttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||||| || |||| ||||||| ||||||||| ||||||
Sbjct: 350 ggttggtagcggtgatggtgatgctgcccggcacgcacga 311
Score = 272 bits (137), Expect = 3e-071
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 294 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 235
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 234 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 175
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 174 ccggacgcctcgccgccgccgtagaaggtggcgtgtgcggtctgccacgagccgtagtcg 115
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 114 ccggcggcc 106
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0004I04f,
mRNA sequence
Length = 894
Score = 289 bits (146), Expect = 1e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 328 agctcgtagcangacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 269
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 268 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 209
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 208 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 149
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 148 ccggcggcc 140
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 287 bits (145), Expect = 4e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 264
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 263 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 204
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 203 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 144
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 143 ccggcggcc 135
Score = 163 bits (82), Expect = 2e-038
Identities = 170/198 (85%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 733 ttcttcacgcacggcaccctcctgtaggcgac-gggcacgatgccggcgcggtactgcgc 791
||||||||||| |||||||||| ||||| || ||||||||||||||||||||| |
Sbjct: 537 ttcttcacgcagggcaccctccggtaggaaaccgggcacgatgccggcgcggtagatacc 478
Query: 792 gatctggaggaaggccggctgggccatgtcgaagtgcgggcgcggcgggttgcaccagcc 851
|||||||||| |||| |||| |||||||||||||| | |||||||||||||||||||||
Sbjct: 477 gatctggaggtaggcgggctttgccatgtcgaagtgggcgcgcggcgggttgcaccagcc 418
Query: 852 gccgtcgtcgctggggaggccgtagttgggcgggcagaagttggtggccgtgacggtgat 911
|||||||||| ||| || ||||||||| |||||| | ||||||||| |||| ||||||
Sbjct: 417 gccgtcgtcgttggccagcgcgtagttggccgggcaaaggttggtggcggtgatggtgat 358
Query: 912 ggtgcccggcaggcacga 929
| ||||||||| ||||||
Sbjct: 357 gctgcccggcacgcacga 340
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 287 bits (145), Expect = 4e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 342 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 283
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 282 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 223
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 222 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 163
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 162 ccggcggcc 154
Score = 268 bits (135), Expect = 4e-070
Identities = 251/286 (87%), Gaps = 3/286 (1%)
Strand = Plus / Minus
Query: 644 cggactgcacgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagt 703
|||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct: 641 cggantgcacgtccccggc-ccggccacgt-ggtcaccagcaccaggtt-aagtaggagt 585
Query: 704 ggccgttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcga 763
| ||||||||||||||||| |||||||| |||||||| || |||||| ||| ||||| |
Sbjct: 584 gcccgttgatggtgaacctcatcccgcctttcttcacacagggcaccttccggtaggaaa 525
Query: 764 cgggcacgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcga 823
|||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||
Sbjct: 524 cgggcacgatgccggcgcggtagataccgatctggaggtaggcgggctctgccatgtcga 465
Query: 824 agtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcg 883
|||| | ||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 464 agtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgggcagcgcgtagttgggcg 405
Query: 884 ggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||| | ||||||| | |||| ||||||| ||||||||| ||||||
Sbjct: 404 ggcaaaggttggtgccggtgatggtgatgctgcccggcacgcacga 359
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 287 bits (145), Expect = 4e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 261
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 260 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 201
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 200 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 141
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 140 ccggcggcc 132
Score = 149 bits (75), Expect = 3e-034
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 791 cgatctggaggaaggccggctgggccatgtcgaagtgcgggcgcggcgggttgcaccagc 850
||||||||||| |||| |||| |||||||||||||| | ||||||||||||||||||||
Sbjct: 475 cgatctggaggtaggcgggctctgccatgtcgaagtgggcgcgcggcgggttgcaccagc 416
Query: 851 cgccgtcgtcgctggggaggccgtagttgggcgggcagaagttggtggccgtgacggtga 910
||||||||||| |||| || |||||||||||||||| | ||||||||| |||| |||||
Sbjct: 415 cgccgtcgtcgttgggcagcgcgtagttgggcgggcaaaggttggtggcggtgatggtga 356
Query: 911 tggtgcccggcaggcacga 929
|| ||||||||| ||||||
Sbjct: 355 tgctgcccggcacgcacga 337
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 287 bits (145), Expect = 4e-076
Identities = 178/189 (94%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 331 agctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 272
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 271 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 212
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 211 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 152
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 151 ccggcggcc 143
Score = 135 bits (68), Expect = 4e-030
Identities = 104/116 (89%)
Strand = Plus / Minus
Query: 814 gccatgtcgaagtgcgggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccg 873
|||||||||||||| | ||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 463 gccatgtcgaagtgggcgcgcggcgggttgcaccagccgccgtcgtcgttgggcagcgcg 404
Query: 874 tagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 403 tagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 348
>gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0011P08f,
mRNA sequence
Length = 1124
Score = 280 bits (141), Expect = 1e-073
Identities = 177/189 (93%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 333 agctcgtagcacgacccgcaagccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 274
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 273 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 214
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 213 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 154
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 153 ccggcggcc 145
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 272 bits (137), Expect = 3e-071
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
|||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 321 agcttgtagcacgacccgcacgccgcgccgttgttgaacagcgccgtgctcagcgccgcc 262
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 261 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 202
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 201 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 142
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 141 ccggcggcc 133
Score = 67.9 bits (34), Expect = 8e-010
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 872 cgtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||||||||||||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 395 cgtagttgggcgggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 338
>gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01B01
5-PRIME, mRNA sequence
Length = 685
Score = 262 bits (132), Expect = 3e-068
Identities = 207/232 (89%)
Strand = Plus / Minus
Query: 447 ctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgtt 506
|||||||||||||||||||||||||||||||||||||||||| || || ||| || ||||
Sbjct: 232 ctagaactgggcgccctcgaaggtctggccgaactgccagccggcgggcgcggcggcgtt 173
Query: 507 gctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgag 566
|||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| ||
Sbjct: 172 gctggtgacggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccag 113
Query: 567 gagcgagttgctctgccagttctggccccagttgcgggacatgggctgccacccggtgct 626
|| | |||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 112 gaaggtgttgctctgccagttcatgccccagttgcgggacatggcctgccagccggtgcg 53
Query: 627 ggagcccttgatggacacggactgcacgtccccggcgccggccacgttggtc 678
| |||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 52 cgtgcccttgatggacacggagcgcgcgtcgccggcgccggccacgttggtc 1
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010L18f,
mRNA sequence
Length = 677
Score = 260 bits (131), Expect = 1e-067
Identities = 174/189 (92%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
|||| |||||| ||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 335 agcttgtagcacgacccgcacgccgcgcngtngttgaacagcgccgtgctcagcgccgcc 276
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 275 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 216
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 215 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgacccgtagtcg 156
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 155 ccggcggcc 147
Score = 83.8 bits (42), Expect = 1e-014
Identities = 99/117 (84%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 814 gccatgtcgaagtgcgggcgcggcggg-ttgcaccagccgccgtcgtcgctggggaggcc 872
|||||||||||||| | ||| || ||| |||||||| |||||||||||| |||| || |
Sbjct: 468 gccatgtcgaagtgggcgcgggggggggttgcaccacccgccgtcgtcgttgggcagngc 409
Query: 873 gtagttgggcgggcagaagttggtggccgtgacggtgatggtgcccggcaggcacga 929
|||||||| ||||| | ||||||||| |||| ||||||| ||||||||| ||||||
Sbjct: 408 gtagttggcggggcaaaggttggtggcggtgatggtgatgctgcccggcacgcacga 352
>gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0024K11f, mRNA sequence
Length = 847
Score = 258 bits (130), Expect = 4e-067
Identities = 175/190 (92%)
Strand = Plus / Minus
Query: 939 gttgtcgcagcgcagctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgt 998
||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 364 gttgtcgcagcgcagctggtagcacgacccgcacgccgcgccgtcgttgaacagcgccgt 305
Query: 999 gctcagcgccgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgc 1058
|||||||||||||||||| ||||||||||| |||||||||| ||| ||||| ||||||||
Sbjct: 304 gctcagcgccgccgtgttcgtgccgtacccagtgctgtacaggttaccgtacccgcacgc 245
Query: 1059 gccgcccatcgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgcca 1118
|||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 244 cccgcccatcgtgccggaggcgtcgccgccgccgtagaaggtggcatgggcgctctgcca 185
Query: 1119 cgagccgtag 1128
| |||||||
Sbjct: 184 cccgccgtag 175
>gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019G01f,
mRNA sequence
Length = 669
Score = 250 bits (126), Expect = 1e-064
Identities = 176/190 (92%), Gaps = 2/190 (1%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcg-ccgtcgttgaacagcgccgtgctcagcgccgc 1010
||||||||||| ||||||||||| ||| |||| ||| |||||||||||||||||||||||
Sbjct: 314 agctcgtagcacgacccgcacgccgcgnccgttgtt-aacagcgccgtgctcagcgccgc 256
Query: 1011 cgtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgt 1070
|||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 255 cgtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgt 196
Query: 1071 gccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtc 1130
||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 195 gccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtc 136
Query: 1131 gacgccggcc 1140
| || |||||
Sbjct: 135 gccggcggcc 126
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0009F06f,
mRNA sequence
Length = 665
Score = 248 bits (125), Expect = 4e-064
Identities = 157/168 (93%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 180 agctngtagcaccacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgccgcc 121
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 120 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 61
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccac 1119
|| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 60 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccac 13
Score = 226 bits (114), Expect = 1e-057
Identities = 228/265 (86%), Gaps = 1/265 (0%)
Strand = Plus / Minus
Query: 666 ggccacgttggtcaccagcaccagg-ttgaagtaggagtggccgttgatggtgaacctga 724
||||||||||||| |||| |||| | |||||||||| ||||||||| || || ||||| |
Sbjct: 461 ggccacgttggtctccagaaccacgcttgaagtaggcgtggccgttcatcgtaaacctca 402
Query: 725 tcccgcccttcttcacgcacggcaccctcctgtaggcgacgggcacgatgccggcgcggt 784
|||||||||||||||| || |||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 401 tcccgcccttcttcacacagggcaccctccggtaggaaacgggcacgatgccggcccggt 342
Query: 785 actgcgcgatctggaggaaggccggctgggccatgtcgaagtgcgggcgcggcgggttgc 844
| ||||||||||| |||| |||| ||||||| |||||| | ||||||||||||||
Sbjct: 341 agataccgatctggaggtaggcgggctctgccatgtngaagtgggcgcgcggcgggttgc 282
Query: 845 accagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttggtggccgtga 904
||||||||||||||||| |||| || |||||||||||||||| | ||||||||| ||||
Sbjct: 281 accagccgccgtcgtcgttgggcagcgcgtagttgggcgggcaaaggttggtggcggtga 222
Query: 905 cggtgatggtgcccggcaggcacga 929
||||||| ||||||||| ||||||
Sbjct: 221 tggtgatgctgcccggcacgcacga 197
>gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0014B22f,
mRNA sequence
Length = 660
Score = 248 bits (125), Expect = 4e-064
Identities = 169/184 (91%)
Strand = Plus / Minus
Query: 957 gtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgccgtgtt 1016
||||| |||||||||| | || | || |||||||||||||||||||||||||||||||||
Sbjct: 311 gtagcgggacccgcactccgcnctgttgttgaacagcgccgtgctcagcgccgccgtgtt 252
Query: 1017 ggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtgccaga 1076
|||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct: 251 cgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtgccgga 192
Query: 1077 cgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcgacgcc 1136
||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |
Sbjct: 191 cgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcgccggc 132
Query: 1137 ggcc 1140
||||
Sbjct: 131 ggcc 128
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 248 bits (125), Expect = 4e-064
Identities = 173/189 (91%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 346 agctcgtagcacgacccgcacgccgcgctgtcgttgaacagcgccgtgctcagcgccgca 287
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||| ||||| ||||||||||||||| |||
Sbjct: 286 gtgttcgtgccgtaacccgtgctgtacaggttccggtagcagcacgcgccgcccattgtg 227
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct: 226 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagctgtagtcg 167
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 166 ccggcggcc 158
Score = 234 bits (118), Expect = 6e-060
Identities = 237/274 (86%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 658 ccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccgttgatggtg 717
||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||
Sbjct: 636 ccggcgccggccacgttggtctcaagccccaggttaaagtaggagtggccgttgatggtg 577
Query: 718 aacctgatcccgcccttcttcacgcacggcaccctcctgtagg-cgacgggcacgatgcc 776
||||| |||||||| |||||||| || ||| |||||| ||||| ||||||||||||||
Sbjct: 576 aacctcatcccgcctttcttcacacagggccccctccggtaggaaaacgggcacgatgcc 517
Query: 777 ggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgcgggcgcgg 836
||||||||| ||||||||||| |||| |||| |||||||||||||| | ||||||
Sbjct: 516 ggcgcggtagataccgatctggaggtaggcgggctctgccatgtcgaagtgggcgcgcgg 457
Query: 837 cgggttgcaccagccgccgtcgtcgctggggaggccgta-gttgggcgggcagaagttgg 895
|||||||||||||||||||| |||| |||| || |||| |||||||||||| | |||||
Sbjct: 456 cgggttgcaccagccgccgtggtcgttgggcagcgcgtaggttgggcgggcaaaggttgg 397
Query: 896 tggccgtgacggtgatggtgcccggcaggcacga 929
|| | |||| ||||||| ||||||||| ||||||
Sbjct: 396 tgacggtgatggtgatgctgcccggcacgcacga 363
>gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS08C15
5-PRIME, mRNA sequence
Length = 364
Score = 246 bits (124), Expect = 2e-063
Identities = 166/180 (92%)
Strand = Plus / Minus
Query: 949 cgcagctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgcc 1008
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 364 cgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcgccgtgctcagcgcc 305
Query: 1009 gccgtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatc 1068
|||||||| ||||||||||| |||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 304 gccgtgttcgtgccgtacccagtgctgtacaggttaccgtacccgcacgccccgcccatc 245
Query: 1069 gtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtag 1128
||||| || |||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 244 gtgccggaggcgtcgccgccgccgtagaaggtggcatgggcgctctgccacccgccgtag 185
>gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0022D10f, mRNA sequence
Length = 768
Score = 232 bits (117), Expect = 2e-059
Identities = 171/189 (90%)
Strand = Plus / Minus
Query: 952 agctcgtagcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgcc 1011
|||||||||||||| ||||| | || | |||||||| |||| ||||||||||||||||
Sbjct: 295 agctcgtagcaggatccgcagggcgcacggtcgttgagcagccgcgtgctcagcgccgcc 236
Query: 1012 gtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtg 1071
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 235 gtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgcccattgtg 176
Query: 1072 ccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccgtagtcg 1131
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 175 ccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccgtagtcg 116
Query: 1132 acgccggcc 1140
|| |||||
Sbjct: 115 ccggcggcc 107
Score = 56.0 bits (28), Expect = 3e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 831 gcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaa 890
||||| ||||||||||||||| | ||||||| | || || ||||||||||||||| |
Sbjct: 410 gcgcgccgggttgcaccagcctctgtcgtcgttcggcagcgcgtagttgggcgggccaag 351
Query: 891 gttggtggccgtgacggtgatggtgcccggca 922
||||||| | |||| | ||||| |||||||||
Sbjct: 350 gttggtgccggtgatgctgatgctgcccggca 319
>gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022L12f,
mRNA sequence
Length = 707
Score = 196 bits (99), Expect = 1e-048
Identities = 163/183 (89%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 959 agcaggacccgcacgcggcgccgtcgttgaacagcgccgtgctcagcgccgccgtgttgg 1018
|||| |||||| |||| |||| || |||||||||||||||||||||||||||||||| |
Sbjct: 313 agcacgacccggacgccgcgctgtaattgaacagcgccgtgctcagcgccgccgtgttcg 254
Query: 1019 tgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgcccatcgtgccagacg 1078
||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 253 tgccgtaacccgtgctgtacaggttccagtagccgcacgcgccgcccattgtgccggacg 194
Query: 1079 cgtcgccgccgccgtagaacgtg-gcgtgggcgctctgccacgagccgtagtcgacgccg 1137
||| |||||| |||||||| ||| |||||| || |||||||||||||||||||| || ||
Sbjct: 193 cgttgccgcccccgtagaaggtgcgcgtggccggtctgccacgagccgtagtcgccggcg 134
Query: 1138 gcc 1140
|||
Sbjct: 133 gcc 131
>gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N14
5-PRIME, mRNA sequence
Length = 294
Score = 196 bits (99), Expect = 1e-048
Identities = 126/135 (93%)
Strand = Plus / Minus
Query: 1006 gccgccgtgttggtgccgtaccccgtgctgtacatgttcccgtagccgcacgcgccgccc 1065
||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 294 gccgccgtgttcgtgccgtaacccgtgctgtacaggttcccgtagccgcacgcgccgccc 235
Query: 1066 atcgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggcgctctgccacgagccg 1125
|| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 234 attgtgccggacgcgtcgccgccgccgtagaaggtggcgtgggcggtctgccacgagccg 175
Query: 1126 tagtcgacgccggcc 1140
|||||| || |||||
Sbjct: 174 tagtcgccggcggcc 160
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 188 bits (95), Expect = 3e-046
Identities = 212/251 (84%)
Strand = Plus / Minus
Query: 649 tgcacgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccg 708
|||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 367 tgcacgtcgccggggccacccacgttggtgaccagcaccaggttgaagtacgagtggcca 308
Query: 709 ttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggc 768
||||| ||||||||||| |||||||||||| ||||| |||||| | ||||| ||||||
Sbjct: 307 ttgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggagacgggg 248
Query: 769 acgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgc 828
|| |||||||||||||| ||||||| | ||||| | ||||||| ||||||||||||
Sbjct: 247 acaatgccggcgcggtagagcgcgatgcgctggaagacgggctgggacatgtcgaagtgg 188
Query: 829 gggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcag 888
| ||| || |||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct: 187 gcgcggggagggttgcaccagccgccggcgtcggacgactcgccgaagttgggcgggcag 128
Query: 889 aagttggtggc 899
|||||||||||
Sbjct: 127 aagttggtggc 117
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 550 aggctctggccgtcgaggagcgagttgctctgccagttctggccccagttgcg 602
|||| ||| |||||||| |||| |||||||||||||||||| |||||||||||
Sbjct: 469 aggccctgcccgtcgagcagcgcgttgctctgccagttctgcccccagttgcg 417
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 188 bits (95), Expect = 3e-046
Identities = 212/251 (84%)
Strand = Plus / Minus
Query: 649 tgcacgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccg 708
|||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 384 tgcacgtcgccggggccacccacgttggtgaccagcaccaggttgaagtacgagtggcca 325
Query: 709 ttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggc 768
||||| ||||||||||| |||||||||||| ||||| |||||| | ||||| ||||||
Sbjct: 324 ttgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggagacgggg 265
Query: 769 acgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgc 828
|| |||||||||||||| ||||||| | ||||| | ||||||| ||||||||||||
Sbjct: 264 acaatgccggcgcggtagagcgcgatgcgctggaagacgggctgggacatgtcgaagtgg 205
Query: 829 gggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcag 888
| ||| || |||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct: 204 gcgcggggagggttgcaccagccgccggcgtcggacgactcgccgaagttgggcgggcag 145
Query: 889 aagttggtggc 899
|||||||||||
Sbjct: 144 aagttggtggc 134
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 550 aggctctggccgtcgaggagcgagttgctctgccagttctggccccagttgcg 602
|||| ||| |||||||| |||| |||||||||||||||||| |||||||||||
Sbjct: 486 aggccctgcccgtcgagcagcgcgttgctctgccagttctgcccccagttgcg 434
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 978 gccgtcgttgaacagcgccgtgctcagcgccgccgtg 1014
||||| |||||| |||||||||||||| |||||||||
Sbjct: 37 gccgttgttgaagagcgccgtgctcagggccgccgtg 1
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 188 bits (95), Expect = 3e-046
Identities = 212/251 (84%)
Strand = Plus / Minus
Query: 649 tgcacgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccg 708
|||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 388 tgcacgtcgccggggccacccacgttggtgaccagcaccaggttgaagtacgagtggcca 329
Query: 709 ttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggc 768
||||| ||||||||||| |||||||||||| ||||| |||||| | ||||| ||||||
Sbjct: 328 ttgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggagacgggg 269
Query: 769 acgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgc 828
|| |||||||||||||| ||||||| | ||||| | ||||||| ||||||||||||
Sbjct: 268 acaatgccggcgcggtagagcgcgatgcgctggaagacgggctgggacatgtcgaagtgg 209
Query: 829 gggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcag 888
| ||| || |||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct: 208 gcgcggggagggttgcaccagccgccggcgtcggacgactcgccgaagttgggcgggcag 149
Query: 889 aagttggtggc 899
|||||||||||
Sbjct: 148 aagttggtggc 138
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 550 aggctctggccgtcgaggagcgagttgctctgccagttctggccccagttgcg 602
|||| ||| |||||||| |||| |||||||||||||||||| |||||||||||
Sbjct: 490 aggccctgcccgtcgagcagcgcgttgctctgccagttctgcccccagttgcg 438
>gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0001D17f, mRNA sequence
Length = 689
Score = 180 bits (91), Expect = 7e-044
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 990 cagcgccgtgctcagcgccgccgtgttggtgccgtaccccgtgctgtacatgttcccgta 1049
|||| ||||||||||| || ||||||| |||||||| ||||| ||||||| ||||| |||
Sbjct: 295 cagcaccgtgctcagctccaccgtgttcgtgccgtaacccgtactgtacaggttccggta 236
Query: 1050 gccgcacgcgccgcccatcgtgccagacgcgtcgccgccgccgtagaacgtggcgtgggc 1109
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
Sbjct: 235 gccgcacgcgccgcccattgtgccggacgcgtcgccgccgccgtagaaggtggcgtggtc 176
Query: 1110 gctctgccacgagccgtagtcgacgccggcc 1140
| |||||||||||||||||||| || |||||
Sbjct: 175 ggtctgccacgagccgtagtcgccggcggcc 145
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 180 bits (91), Expect = 7e-044
Identities = 208/247 (84%)
Strand = Plus / Minus
Query: 649 tgcacgtccccggcgccggccacgttggtcaccagcaccaggttgaagtaggagtggccg 708
|||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 261 tgcacgtcgccggggccacccacgttggtgaccagcaccaggttgaagtacgagtggcca 202
Query: 709 ttgatggtgaacctgatcccgcccttcttcacgcacggcaccctcctgtaggcgacgggc 768
||||| ||||||||||| |||||||||||| ||||| |||||| | ||||| ||||||
Sbjct: 201 ttgatcgtgaacctgatgccgcccttcttctggcacgccaccctgcggtaggagacgggg 142
Query: 769 acgatgccggcgcggtactgcgcgatctggaggaaggccggctgggccatgtcgaagtgc 828
|| |||||||||||||| ||||||| | ||||| | ||||||| ||||||||||||
Sbjct: 141 acaatgccggcgcggtagagcgcgatgcgctggaagacgggctgggacatgtcgaagtgg 82
Query: 829 gggcgcggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcag 888
| ||| || |||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct: 81 gcgcggggagggttgcaccagccgccggcgtcggacgactcgccgaagttgggcgggcag 22
Query: 889 aagttgg 895
|||||||
Sbjct: 21 aagttgg 15
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 550 aggctctggccgtcgaggagcgagttgctctgccagttctggccccagttgcg 602
|||| ||| |||||||| |||| |||||||||||||||||| |||||||||||
Sbjct: 363 aggccctgcccgtcgagcagcgcgttgctctgccagttctgcccccagttgcg 311
>gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 3', mRNA sequence
Length = 567
Score = 172 bits (87), Expect = 2e-041
Identities = 135/151 (89%)
Strand = Plus / Plus
Query: 447 ctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgtt 506
|||||||||||||||||||||||||||||||||||||||||| || || ||| || ||||
Sbjct: 417 ctagaactgggcgccctcgaaggtctggccgaactgccagccggcgggcgcggcggcgtt 476
Query: 507 gctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcgag 566
|||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| ||
Sbjct: 477 gctggtgacggtgcggccgtcgctggaggtgaccctgaaggagaggcactggccgtccag 536
Query: 567 gagcgagttgctctgccagttctggccccag 597
|| | |||||||||||||||| |||||||
Sbjct: 537 gaaggtgttgctctgccagttcatgccccag 567
>gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12u 3', mRNA sequence
Length = 567
Score = 170 bits (86), Expect = 7e-041
Identities = 156/178 (87%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 446 gctagaactgggcgccctcgaaggtctggccgaactgccagcccgccggagcgacgccgt 505
||||||||||| | || ||||||||||| || || |||||| ||||| ||| || ||
Sbjct: 347 gctagaactggcctccttcgaaggtctgtccaaaggaccagccggccggggcggcgttgt 406
Query: 506 tgctggtgacggtgcggccgtcgctggcggtgacctggaaggacaggctctggccgtcga 565
|||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 407 tgctggtgacggtgcggccgtcgctgagggtgacccggaaggagaggctctggccgtcga 466
Query: 566 ggagcgagttgctctgccagttctggcccc-agttgcgggacatgggctgccacccgg 622
|| || ||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 467 ggtccgcgttgctctgccagttctggccccaagttgcgggacatggcctgccacccgg 524
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 314 agagaaggaaatgcctaagcgggtgctaataataagcagcctcggaat 361
||||||||||| ||||||||||||||| || | ||||||||| ||||
Sbjct: 196 agagaaggaaaggcctaagcgggtgctgatcagcagcagcctcagaat 243
>gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0023D24f, mRNA sequence
Length = 550
Score = 163 bits (82), Expect = 2e-038
Identities = 142/162 (87%)
Strand = Plus / Minus
Query: 979 ccgtcgttgaacagcgccgtgctcagcgccgccgtgttggtgccgtaccccgtgctgtac 1038
|||| ||| |||||||| ||| |||||||||||||||| |||||||| ||||||||| ||
Sbjct: 294 ccgttgtttaacagcgcggtgttcagcgccgccgtgttcgtgccgtaacccgtgctgaac 235
Query: 1039 atgttcccgtagccgcacgcgccgcccatcgtgccagacgcgtcgccgccgccgtagaac 1098
| ||||||||| ||||||||||||||||| ||||| |||| ||| ||||| ||||||||
Sbjct: 234 aggttcccgtacccgcacgcgccgcccattgtgccggacgggtccccgcccccgtagaag 175
Query: 1099 gtggcgtgggcgctctgccacgagccgtagtcgacgccggcc 1140
|||||||||||| | |||||||| ||||||||| || |||||
Sbjct: 174 gtggcgtgggcggtttgccacgaaccgtagtcgccggcggcc 133
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 215,040
Number of Sequences: 312970
Number of extensions: 215040
Number of successful extensions: 62490
Number of sequences better than 0.5: 102
Number of HSP's better than 0.5 without gapping: 101
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62189
Number of HSP's gapped (non-prelim): 256
length of query: 1271
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1252
effective length of database: 169,188,109
effective search space: 211823512468
effective search space used: 211823512468
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)