BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM097611.2|BM097611 EBem04_SQ002_D07_R embryo, 12 DPA, n... 159 2e-037
gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke devel... 88 5e-016
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 88 5e-016
gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. v... 88 5e-016
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 88 5e-016
gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, n... 88 5e-016
gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, n... 88 5e-016
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 88 5e-016
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 88 5e-016
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 88 5e-016
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 88 5e-016
gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. v... 88 5e-016
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 88 5e-016
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 88 5e-016
gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. v... 88 5e-016
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 88 5e-016
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 82 3e-014
gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke devel... 82 3e-014
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 82 3e-014
gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. v... 82 3e-014
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 80 1e-013
gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. v... 80 1e-013
gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke devel... 72 3e-011
gb|BM373778.2|BM373778 EBma03_SQ002_K15_R maternal, 8 DPA, ... 68 4e-010
gb|AL509608.1|AL509608 AL509608 Hordeum vulgare Barke devel... 66 2e-009
gb|BF623113.2|BF623113 HVSMEa0014H10f Hordeum vulgare seedl... 62 3e-008
gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike... 62 3e-008
gb|BQ660646.1|BQ660646 HI04K24u HI Hordeum vulgare subsp. v... 62 3e-008
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 62 3e-008
gb|BU987584.1|BU987584 HF15C17r HF Hordeum vulgare subsp. v... 62 3e-008
gb|BU987936.1|BU987936 HF16D03r HF Hordeum vulgare subsp. v... 62 3e-008
gb|BU988620.1|BU988620 HF18D01r HF Hordeum vulgare subsp. v... 62 3e-008
gb|AL504058.1|AL504058 AL504058 Hordeum vulgare Barke roots... 58 4e-007
gb|AL505088.1|AL505088 AL505088 Hordeum vulgare Barke roots... 58 4e-007
gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA li... 58 4e-007
gb|AV910093.1|AV910093 AV910093 K. Sato unpublished cDNA li... 58 4e-007
gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA li... 58 4e-007
gb|AV912272.1|AV912272 AV912272 K. Sato unpublished cDNA li... 58 4e-007
gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA li... 58 4e-007
gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ459642.1|BJ459642 BJ459642 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA li... 58 4e-007
gb|BQ763927.1|BQ763927 EBro03_SQ005_E22 _R root, 3 week, wa... 58 4e-007
gb|BQ768434.1|BQ768434 EBro08_SQ011_O17_R root, 3 week, dro... 58 4e-007
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 54 7e-006
gb|AV925157.1|AV925157 AV925157 K. Sato unpublished cDNA li... 52 3e-005
gb|AV930310.1|AV930310 AV930310 K. Sato unpublished cDNA li... 52 3e-005
gb|BQ756100.1|BQ756100 EBem05_SQ001_L15_R embryo, 14 DPA, n... 52 3e-005
gb|AL501398.1|AL501398 AL501398 Hordeum vulgare Barke roots... 50 1e-004
gb|BG299400.1|BG299400 HVSMEa0019M24f Hordeum vulgare seedl... 50 1e-004
gb|AV925156.1|AV925156 AV925156 K. Sato unpublished cDNA li... 50 1e-004
gb|BI779275.2|BI779275 EBro01_SQ003_I12_R root, 3 week, hyd... 50 1e-004
gb|BF627475.2|BF627475 HVSMEb0004P08f Hordeum vulgare seedl... 48 4e-004
gb|BI952309.1|BI952309 HVSMEm0005N14f Hordeum vulgare green... 48 4e-004
gb|BI952837.1|BI952837 HVSMEm0007O18f Hordeum vulgare green... 48 4e-004
gb|BF264237.3|BF264237 HV_CEa0008O05f Hordeum vulgare seedl... 48 4e-004
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 48 4e-004
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 48 4e-004
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CA027544.1|CA027544 HZ59E07r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 48 4e-004
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 48 4e-004
gb|AL502368.1|AL502368 AL502368 Hordeum vulgare Barke roots... 46 0.002
gb|BF259925.2|BF259925 HVSMEf0020K05f Hordeum vulgare seedl... 46 0.002
gb|BI950729.1|BI950729 HVSMEl0023A02f Hordeum vulgare spike... 46 0.002
gb|AV912950.1|AV912950 AV912950 K. Sato unpublished cDNA li... 46 0.002
gb|AV917706.1|AV917706 AV917706 K. Sato unpublished cDNA li... 46 0.002
gb|AJ434576.1|AJ434576 AJ434576 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ436541.1|AJ436541 AJ436541 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ463257.1|AJ463257 AJ463257 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ463258.1|AJ463258 AJ463258 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ463490.1|AJ463490 AJ463490 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ463491.1|AJ463491 AJ463491 S00002 Hordeum vulgare subs... 46 0.002
gb|BJ452042.1|BJ452042 BJ452042 K. Sato unpublished cDNA li... 46 0.002
gb|BJ459599.1|BJ459599 BJ459599 K. Sato unpublished cDNA li... 46 0.002
gb|BQ467967.1|BQ467967 HR01H24r HR Hordeum vulgare subsp. v... 46 0.002
gb|BQ662087.1|BQ662087 HR01H24u HR Hordeum vulgare subsp. v... 46 0.002
gb|BM370011.2|BM370011 EBro08_SQ002_K19_R root, 3 week, dro... 46 0.002
gb|BQ764044.1|BQ764044 EBro03_SQ006_J02_R root, 3 week, wat... 46 0.002
gb|BQ766496.1|BQ766496 EBro08_SQ006_B12_R root, 3 week, dro... 46 0.002
gb|CA008281.1|CA008281 HU10H13r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA020259.1|CA020259 HV14M16r HV Hordeum vulgare subsp. v... 46 0.002
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 46 0.002
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 44 0.006
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 44 0.006
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 44 0.006
gb|BQ469174.1|BQ469174 HM03J24r HM Hordeum vulgare subsp. v... 44 0.006
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 44 0.006
gb|BU971131.1|BU971131 HB16L05r BC Hordeum vulgare subsp. v... 44 0.006
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 44 0.006
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 44 0.006
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 44 0.006
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 44 0.006
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 44 0.006
gb|BU995043.1|BU995043 HM09A05r HM Hordeum vulgare subsp. v... 44 0.006
gb|BU995199.1|BU995199 HM09I09r HM Hordeum vulgare subsp. v... 44 0.006
gb|BU995756.1|BU995756 HM11E09r HM Hordeum vulgare subsp. v... 44 0.006
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 44 0.006
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 44 0.006
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 44 0.006
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 44 0.006
gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. v... 44 0.006
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 44 0.006
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 44 0.006
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 44 0.006
gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. v... 44 0.006
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 44 0.006
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 42 0.025
gb|BE421843.1|BE421843 HWM015cD.02r ITEC HWM Barley Leaf Li... 42 0.025
gb|AL503334.1|AL503334 AL503334 Hordeum vulgare Barke roots... 42 0.025
gb|AL505285.1|AL505285 AL505285 Hordeum vulgare Barke roots... 42 0.025
gb|AL505645.1|AL505645 AL505645 Hordeum vulgare Barke roots... 42 0.025
gb|BF257331.2|BF257331 HVSMEf0012J06f Hordeum vulgare seedl... 42 0.025
gb|BF256140.2|BF256140 HVSMEf0008N22f Hordeum vulgare seedl... 42 0.025
gb|BF253395.3|BF253395 HVSMEf0001E23f Hordeum vulgare seedl... 42 0.025
gb|BF253600.3|BF253600 HVSMEf0001J16f Hordeum vulgare seedl... 42 0.025
gb|BF254940.3|BF254940 HVSMEf0005H16f Hordeum vulgare seedl... 42 0.025
gb|BF257923.3|BF257923 HVSMEf0014E01f Hordeum vulgare seedl... 42 0.025
gb|BF259425.3|BF259425 HVSMEf0019B06f Hordeum vulgare seedl... 42 0.025
gb|BF260272.3|BF260272 HVSMEf0021I24f Hordeum vulgare seedl... 42 0.025
gb|AV924386.1|AV924386 AV924386 K. Sato unpublished cDNA li... 42 0.025
gb|AV925407.1|AV925407 AV925407 K. Sato unpublished cDNA li... 42 0.025
gb|AV929478.1|AV929478 AV929478 K. Sato unpublished cDNA li... 42 0.025
gb|AV930561.1|AV930561 AV930561 K. Sato unpublished cDNA li... 42 0.025
gb|BM816117.1|BM816117 HC113G07_SK.ab1 HC Hordeum vulgare s... 42 0.025
gb|AJ434083.1|AJ434083 AJ434083 S00002 Hordeum vulgare subs... 42 0.025
gb|AJ436422.1|AJ436422 AJ436422 S00002 Hordeum vulgare subs... 42 0.025
gb|AJ461779.1|AJ461779 AJ461779 S00002 Hordeum vulgare subs... 42 0.025
gb|AJ461922.1|AJ461922 AJ461922 S00002 Hordeum vulgare subs... 42 0.025
gb|AJ462228.1|AJ462228 AJ462228 S00002 Hordeum vulgare subs... 42 0.025
gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA li... 42 0.025
gb|BJ447891.1|BJ447891 BJ447891 K. Sato unpublished cDNA li... 42 0.025
gb|BJ448110.1|BJ448110 BJ448110 K. Sato unpublished cDNA li... 42 0.025
gb|BJ448486.1|BJ448486 BJ448486 K. Sato unpublished cDNA li... 42 0.025
gb|BJ453038.1|BJ453038 BJ453038 K. Sato unpublished cDNA li... 42 0.025
gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA li... 42 0.025
gb|BJ455637.1|BJ455637 BJ455637 K. Sato unpublished cDNA li... 42 0.025
gb|BJ455845.1|BJ455845 BJ455845 K. Sato unpublished cDNA li... 42 0.025
gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA li... 42 0.025
gb|BJ460586.1|BJ460586 BJ460586 K. Sato unpublished cDNA li... 42 0.025
gb|BQ467852.1|BQ467852 HR01C06r HR Hordeum vulgare subsp. v... 42 0.025
gb|BQ467952.1|BQ467952 HR01H05r HR Hordeum vulgare subsp. v... 42 0.025
gb|BQ468082.1|BQ468082 HR01O09r HR Hordeum vulgare subsp. v... 42 0.025
gb|BQ468098.1|BQ468098 HR01P02r HR Hordeum vulgare subsp. v... 42 0.025
gb|BM445070.2|BM445070 EBem09_SQ007_F11_R embryo, 1 Day ger... 42 0.025
gb|BM443385.2|BM443385 EBro02_SQ003_N22_R root, 3 week, hyd... 42 0.025
gb|BM370705.2|BM370705 EBro04_SQ001_O14_R root, 3 week, sal... 42 0.025
gb|BI777848.2|BI777848 EBro08_SQ002_E20_R root, 3 week, dro... 42 0.025
gb|BQ760636.1|BQ760636 EBro03_SQ003_A21_R root, 3 week, wat... 42 0.025
gb|BQ763299.1|BQ763299 EBro02_SQ007_K19_R root, 3 week, hyd... 42 0.025
gb|BQ763329.1|BQ763329 EBro02_SQ007_P23_R root, 3 week, hyd... 42 0.025
gb|BQ765319.1|BQ765319 EBro03_SQ006_H19_R root, 3 week, wat... 42 0.025
gb|BQ766691.1|BQ766691 EBro08_SQ006_I21_R root, 3 week, dro... 42 0.025
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 42 0.025
gb|CD662528.1|CD662528 UCRHV18_02ba05_b1 Drought-stressed D... 42 0.025
gb|BE420585.1|BE420585 HWM000.D10 ITEC HWM Barley Leaf Libr... 40 0.099
gb|BE420985.1|BE420985 HWM004.F02 ITEC HWM Barley Leaf Libr... 40 0.099
gb|BE421050.1|BE421050 HWM005.C07 ITEC HWM Barley Leaf Libr... 40 0.099
gb|BE421717.1|BE421717 HWM013cE.04r ITEC HWM Barley Leaf Li... 40 0.099
gb|BF625588.2|BF625588 HVSMEa0011K14f Hordeum vulgare seedl... 40 0.099
gb|BF623191.2|BF623191 HVSMEa0015C05f Hordeum vulgare seedl... 40 0.099
gb|BF626724.1|BF626724 HVSMEb0001C21f Hordeum vulgare seedl... 40 0.099
gb|BF618765.2|BF618765 HVSMEc0007L17f Hordeum vulgare seedl... 40 0.099
gb|BF619995.2|BF619995 HVSMEc0009P08f Hordeum vulgare seedl... 40 0.099
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 40 0.099
gb|BI959614.1|BI959614 HVSMEn0020G21f Hordeum vulgare rachi... 40 0.099
gb|BF619116.2|BF619116 HVSMEc0011C05f Hordeum vulgare seedl... 40 0.099
gb|BF256697.3|BF256697 HVSMEf0010L20f Hordeum vulgare seedl... 40 0.099
gb|BG343557.2|BG343557 HVSMEg0006G04f Hordeum vulgare pre-a... 40 0.099
gb|BM098165.1|BM098165 EBpi03_SQ002_L17_R pistil, 4 DPA, no... 40 0.099
gb|AV909403.1|AV909403 AV909403 K. Sato unpublished cDNA li... 40 0.099
gb|AV911298.1|AV911298 AV911298 K. Sato unpublished cDNA li... 40 0.099
gb|BQ469222.1|BQ469222 HM03M06r HM Hordeum vulgare subsp. v... 40 0.099
gb|BM375844.2|BM375844 EBem06_SQ004_J05_R embryo, 21 DPA, n... 40 0.099
gb|BM100530.2|BM100530 EBma01_SQ005_H21_R maternal, 4 DPA, ... 40 0.099
gb|BI780941.2|BI780941 EBma05_SQ001_J10_R maternal, 12 DPA,... 40 0.099
gb|BM096909.2|BM096909 EBma08_SQ001_P18_R maternal, 28 DPA,... 40 0.099
gb|BM372188.2|BM372188 EBro03_SQ004_E09_R root, 3 week, wat... 40 0.099
gb|BI777995.2|BI777995 EBro07_SQ001_M02_R root, 3 week, red... 40 0.099
gb|BI778326.2|BI778326 EBro07_SQ002_O06_R root, 3 week, red... 40 0.099
gb|BU994411.1|BU994411 HM06P18r HM Hordeum vulgare subsp. v... 40 0.099
gb|BU994797.1|BU994797 HM08D16r HM Hordeum vulgare subsp. v... 40 0.099
gb|BU995059.1|BU995059 HM09B03r HM Hordeum vulgare subsp. v... 40 0.099
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 40 0.099
gb|CB880582.1|CB880582 HM06P18w HM Hordeum vulgare subsp. v... 40 0.099
gb|CB880919.1|CB880919 HM08D16w HM Hordeum vulgare subsp. v... 40 0.099
gb|CB881200.1|CB881200 HM09B03w HM Hordeum vulgare subsp. v... 40 0.099
gb|BE427757.1|BE427757 PSR6709 ITEC PSR Barley Inflorescenc... 38 0.39
gb|BE427829.1|BE427829 PSR6823 ITEC PSR Barley Inflorescenc... 38 0.39
gb|BE427856.1|BE427856 PSR6858 ITEC PSR Barley Inflorescenc... 38 0.39
gb|BE427880.1|BE427880 PSR6887 ITEC PSR Barley Inflorescenc... 38 0.39
gb|BF257569.2|BF257569 HVSMEf0013E08f Hordeum vulgare seedl... 38 0.39
gb|BJ449028.1|BJ449028 BJ449028 K. Sato unpublished cDNA li... 38 0.39
gb|BJ456484.1|BJ456484 BJ456484 K. Sato unpublished cDNA li... 38 0.39
gb|BQ463580.1|BQ463580 HI05M10r HI Hordeum vulgare subsp. v... 38 0.39
gb|BQ470505.1|BQ470505 HX03C23r HX Hordeum vulgare subsp. v... 38 0.39
gb|BQ471974.1|BQ471974 HV04A20r HV Hordeum vulgare subsp. v... 38 0.39
gb|BI777804.2|BI777804 EBro08_SQ002_C04_R root, 3 week, dro... 38 0.39
gb|BU980007.1|BU980007 HA18D03r HA Hordeum vulgare subsp. v... 38 0.39
gb|BU997839.1|BU997839 HI09C20r HI Hordeum vulgare subsp. v... 38 0.39
gb|CA001873.1|CA001873 HS05N14r HS Hordeum vulgare subsp. v... 38 0.39
gb|CA001916.1|CA001916 HS05P15r HS Hordeum vulgare subsp. v... 38 0.39
gb|CA004795.1|CA004795 HS18L11r HS Hordeum vulgare subsp. v... 38 0.39
gb|CA011920.1|CA011920 HT03O16r HT Hordeum vulgare subsp. v... 38 0.39
gb|CA022013.1|CA022013 HZ41O10r HZ Hordeum vulgare subsp. v... 38 0.39
gb|CA022211.1|CA022211 HZ42H16r HZ Hordeum vulgare subsp. v... 38 0.39
gb|CA022573.1|CA022573 HZ43K17r HZ Hordeum vulgare subsp. v... 38 0.39
>gb|BM097611.2|BM097611 EBem04_SQ002_D07_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D07 5', mRNA sequence
Length = 142
Score = 159 bits (80), Expect = 2e-037
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 23 cgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgc 82
||||| || ||| ||||||||||| |||| |||||||||| || ||||||||||||||||
Sbjct: 15 cgccggcgacgcagacgtgcccggtggacacgctgaagctcggggcgtgcgtggacctgc 74
Query: 83 tgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagtgctgcccggtgc 142
|||||||||||||||||||||| || |||||||| ||||||||| ||||||||||| |||
Sbjct: 75 tgggcgggctggtgcatatcgggctgggcgacccggtggtgaaccagtgctgcccgctgc 134
Query: 143 tggagggg 150
||||||||
Sbjct: 135 tggagggg 142
>gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02A12u 3',
mRNA sequence
Length = 531
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Minus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 433 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 374
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 373 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 314
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 313 catcacctgcggcaag 298
>gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
5-PRIME, mRNA sequence
Length = 552
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 369 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 428
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 429 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 488
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 489 catcacctgcggcaag 504
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 279 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 338
Query: 96 gca 98
|||
Sbjct: 339 gca 341
>gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. vulgare cDNA clone HF02B20
5-PRIME, mRNA sequence
Length = 517
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 82 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 141
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 142 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 201
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 202 catcacctgcggcaag 217
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 54 gctgaagctgggcgcgtgcgtggacctgctgggcgggctggtgca 98
|||||||||| ||||||||||||| ||||| |||| ||||||||
Sbjct: 10 gctgaagctgaacgcgtgcgtggacgtgctgagcggactggtgca 54
>gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. vulgare cDNA clone HA02A21
3-PRIME, mRNA sequence
Length = 570
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Minus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 427 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 368
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 367 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 308
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 307 catcacctgcggcaag 292
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 517 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 458
Query: 96 gca 98
|||
Sbjct: 457 gca 455
>gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_A01 5', mRNA sequence
Length = 411
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 76 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 135
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 136 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 195
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 196 catcacctgcggcaag 211
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 53 cgctgaagctgggcgcgtgcgtggacctgctgggcgggctggtgca 98
||||||||||| ||||||||||||| ||||| |||| ||||||||
Sbjct: 3 cgctgaagctgaacgcgtgcgtggacgtgctgagcggactggtgca 48
>gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_A06 5', mRNA sequence
Length = 417
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 66 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 125
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 126 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 185
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 186 catcacctgcggcaag 201
Score = 42.1 bits (21), Expect = 0.025
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 66 cgcgtgcgtggacctgctgggcgggctggtgca 98
||||||||||||| ||||| |||| ||||||||
Sbjct: 6 cgcgtgcgtggacgtgctgagcggactggtgca 38
>gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N09 5', mRNA sequence
Length = 606
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 178 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 237
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 238 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 297
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 298 catcacctgcggcaag 313
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 88 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 147
Query: 96 gca 98
|||
Sbjct: 148 gca 150
>gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L21
5-PRIME, mRNA sequence
Length = 495
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 178 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 237
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 238 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 297
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 298 catcacctgcggcaag 313
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 88 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 147
Query: 96 gca 98
|||
Sbjct: 148 gca 150
>gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K04
5-PRIME, mRNA sequence
Length = 557
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 318 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 377
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 378 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 437
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 438 catcacctgcggcaag 453
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 228 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 287
Query: 96 gca 98
|||
Sbjct: 288 gca 290
>gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A02
5-PRIME, mRNA sequence
Length = 563
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 244 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 303
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 304 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 363
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 364 catcacctgcggcaag 379
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 154 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 213
Query: 96 gca 98
|||
Sbjct: 214 gca 216
>gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. vulgare cDNA clone HF16F02
5-PRIME, mRNA sequence
Length = 436
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 6 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 65
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 66 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 125
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 126 catcacctgcggcaag 141
>gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42K16
5-PRIME, mRNA sequence
Length = 640
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 400 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 459
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 460 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 519
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 520 catcacctgcggcaag 535
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 310 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 369
Query: 96 gca 98
|||
Sbjct: 370 gca 372
>gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G24
5-PRIME, mRNA sequence
Length = 554
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 410 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 469
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 470 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 529
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 530 catcacctgcggcaag 545
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 320 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 379
Query: 96 gca 98
|||
Sbjct: 380 gca 382
>gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. vulgare cDNA clone HI08J20
3-PRIME, mRNA sequence
Length = 519
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Minus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 498 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 439
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 438 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 379
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 378 catcacctgcggcaag 363
>gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D113 5-PRIME, mRNA sequence
Length = 585
Score = 87.7 bits (44), Expect = 5e-016
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 235 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 294
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 295 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 354
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 355 catcacctgcggcaag 370
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 145 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 204
Query: 96 gca 98
|||
Sbjct: 205 gca 207
>gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01V 5',
mRNA sequence
Length = 657
Score = 81.8 bits (41), Expect = 3e-014
Identities = 112/136 (82%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 515 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 574
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 575 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 634
Query: 246 cctcacctgcggcaag 261
| |||||||||| |||
Sbjct: 635 catcacctgcggnaag 650
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 425 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 484
Query: 96 gca 98
|||
Sbjct: 485 gca 487
>gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09I10V 5',
mRNA sequence
Length = 459
Score = 81.8 bits (41), Expect = 3e-014
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 441 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 382
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 381 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 322
Query: 246 cctcacctgcggcaag 261
| |||||| |||||||
Sbjct: 321 catcacctncggcaag 306
>gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E06 5', mRNA sequence
Length = 422
Score = 81.8 bits (41), Expect = 3e-014
Identities = 115/137 (83%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 182 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 241
Query: 186 caccat-caagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcc 244
|||||| | || | || |||||||||||||| ||||||| || ||||||||| ||| |
Sbjct: 242 caccatgcgggcgcggg-tcctcaacatcaacatctacctcccggtggcgctccggctgc 300
Query: 245 tcctcacctgcggcaag 261
|| ||||||||||||||
Sbjct: 301 tcatcacctgcggcaag 317
Score = 46.1 bits (23), Expect = 0.002
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| | |||
Sbjct: 92 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggacgggt 151
Query: 96 gca 98
|||
Sbjct: 152 gca 154
>gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. vulgare cDNA clone HF18K17
5-PRIME, mRNA sequence
Length = 424
Score = 81.8 bits (41), Expect = 3e-014
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| || || ||||| ||| ||| ||||| ||||| ||||||||||||||||
Sbjct: 11 gtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcaccac 70
Query: 189 catcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcct 248
|||| | || |||||||||||||| ||||||| || ||||||||| ||| ||| |
Sbjct: 71 catccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgctcat 130
Query: 249 cacctgcggcaag 261
|||||||||||||
Sbjct: 131 cacctgcggcaag 143
>gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_M19 5', mRNA sequence
Length = 548
Score = 79.8 bits (40), Expect = 1e-013
Identities = 112/136 (82%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| || ||| ||||| ||||| |||||||||||||
Sbjct: 203 caagtgctgcccgctggtgcagggggcggcggacctggacgcggcgctgtgcctctgcac 262
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 263 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 322
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 323 catcacctgcggcaag 338
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 113 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 172
Query: 96 gca 98
|||
Sbjct: 173 gca 175
>gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. vulgare cDNA clone HI12B20
3-PRIME, mRNA sequence
Length = 569
Score = 79.8 bits (40), Expect = 1e-013
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 536 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctatgcac 477
Query: 186 caccatcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcct 245
||||||| | || |||||||||||||| ||||||| || ||||||||| ||| ||
Sbjct: 476 caccatccgggcgcgggtcctcaacatcaacatctacctcccggtggcgctccggctgct 417
Query: 246 cctcacctgcggcaag 261
| ||||||||||||||
Sbjct: 416 catcacctgcggcaag 401
>gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01u 3',
mRNA sequence
Length = 490
Score = 71.9 bits (36), Expect = 3e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 146 aggggctggtggagctggaggcggccgtgtgcctctgcaccaccatcaagctcaggctcc 205
||||| ||| ||| ||||| ||||| |||||||||||||||||||| | || |||
Sbjct: 433 agggggtggcggacctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcc 374
Query: 206 tcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
||||||||||| ||||||| || ||||||||| ||| ||| ||||||||||||||
Sbjct: 373 tcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaag 318
>gb|BM373778.2|BM373778 EBma03_SQ002_K15_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_K15 5', mRNA sequence
Length = 303
Score = 67.9 bits (34), Expect = 4e-010
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 160 ctggaggcggccgtgtgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||| ||||| |||||||||||||||||||| | || |||||||||||||| ||
Sbjct: 1 ctggacgcggcgctgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacatc 60
Query: 220 tacctgccactggcgctccagctcctcctcacctgcggcaag 261
||||| || ||||||||| ||| ||| ||||||||||||||
Sbjct: 61 tacctcccggtggcgctccggctgctcatcacctgcggcaag 102
>gb|AL509608.1|AL509608 AL509608 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02F11u 3',
mRNA sequence
Length = 550
Score = 65.9 bits (33), Expect = 2e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 173 tgtgcctctgcaccaccatcaagctcaggctcctcaacatcaacctctacctgccactgg 232
|||||||||||||||||||| | || |||||||||||||| ||||||| || |||
Sbjct: 473 tgtgcctctgcaccaccatccgggcgcgggtcctcaacatcaacatctacctcccggtgg 414
Query: 233 cgctccagctcctcctcacctgcggcaag 261
|||||| ||| ||| ||||||||||||||
Sbjct: 413 cgctccggctgctcatcacctgcggcaag 385
>gb|BF623113.2|BF623113 HVSMEa0014H10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0014H10f, mRNA sequence
Length = 878
Score = 61.9 bits (31), Expect = 3e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 173 tgtgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 132 tgtgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 86
>gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024F18f, mRNA sequence
Length = 855
Score = 61.9 bits (31), Expect = 3e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 331 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcgggctggt 390
Query: 96 gca 98
|||
Sbjct: 391 gca 393
>gb|BQ660646.1|BQ660646 HI04K24u HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
3-PRIME, mRNA sequence
Length = 369
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 203 tcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
|||||||||||||| ||||||| || ||||||||| ||| ||| ||||||||||||||
Sbjct: 356 tcctcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaag 298
>gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_F02 5', mRNA sequence
Length = 574
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 126 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
||||||||||||| || || ||||| ||| ||| ||||| ||||| |||||||||||||
Sbjct: 470 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 529
Query: 186 caccatc 192
|||||||
Sbjct: 530 caccatc 536
Score = 54.0 bits (27), Expect = 7e-006
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggt 95
|||||||||| ||| ||||||||||| ||||||||||||| ||||| |||| |||||
Sbjct: 380 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgagcggactggt 439
Query: 96 gca 98
|||
Sbjct: 440 gca 442
>gb|BU987584.1|BU987584 HF15C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF15C17
5-PRIME, mRNA sequence
Length = 442
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 203 tcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
|||||||||||||| ||||||| || ||||||||| ||| ||| ||||||||||||||
Sbjct: 22 tcctcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaag 80
>gb|BU987936.1|BU987936 HF16D03r HF Hordeum vulgare subsp. vulgare cDNA clone HF16D03
5-PRIME, mRNA sequence
Length = 396
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 203 tcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
|||||||||||||| ||||||| || ||||||||| ||| ||| ||||||||||||||
Sbjct: 32 tcctcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaag 90
>gb|BU988620.1|BU988620 HF18D01r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D01
5-PRIME, mRNA sequence
Length = 396
Score = 61.9 bits (31), Expect = 3e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 203 tcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
|||||||||||||| ||||||| || ||||||||| ||| ||| ||||||||||||||
Sbjct: 32 tcctcaacatcaacatctacctcccggtggcgctccggctgctcatcacctgcggcaag 90
>gb|AL504058.1|AL504058 AL504058 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04B03V 5', mRNA sequence
Length = 700
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||| | ||||| || || || |||||||||||||||||||||||
Sbjct: 292 gtgctgcccgctgctgaatgggctcgttgacctcgaggcggccgtgtgcctctgcac 348
>gb|AL505088.1|AL505088 AL505088 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07F15V 5', mRNA sequence
Length = 612
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||| | ||||| || || || |||||||||||||||||||||||
Sbjct: 306 gtgctgcccgctgctgaatgggctcgttgacctcgaggcggccgtgtgcctctgcac 362
>gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l03 5', mRNA sequence
Length = 629
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 354 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 398
>gb|AV910093.1|AV910093 AV910093 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3b17 5', mRNA sequence
Length = 281
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 37 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 81
>gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l03 3', mRNA sequence
Length = 580
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 386 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 342
>gb|AV912272.1|AV912272 AV912272 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3b17 3', mRNA sequence
Length = 259
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 161 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 117
>gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11n13 5', mRNA sequence
Length = 685
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 354 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 398
>gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p03 3', mRNA sequence
Length = 748
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 233 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 189
>gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14c15 5', mRNA sequence
Length = 682
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 566 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 610
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
|||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 124 tgcctctgcaccaccatcgagctcaaggcgctcaacatcaacctc 168
>gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l03 5', mRNA sequence
Length = 637
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 361 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 405
>gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14c15 3', mRNA sequence
Length = 866
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 311 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 267
>gb|BJ459642.1|BJ459642 BJ459642 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l03 3', mRNA sequence
Length = 368
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 286 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 242
>gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32d05 5', mRNA sequence
Length = 734
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 34 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 78
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
|||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 607 tgcctctgcaccaccatcgagctcaaggcgctcaacatcaacctc 651
>gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32d05 3', mRNA sequence
Length = 866
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 379 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctc 335
>gb|BQ763927.1|BQ763927 EBro03_SQ005_E22 _R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_E22 5', mRNA sequence
Length = 581
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||| | ||||| || || || |||||||||||||||||||||||
Sbjct: 316 gtgctgcccgctgctgaatgggctcgttgacctcgaggcggccgtgtgcctctgcac 372
>gb|BQ768434.1|BQ768434 EBro08_SQ011_O17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_O17 5', mRNA sequence
Length = 555
Score = 58.0 bits (29), Expect = 4e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||| | ||||| || || || |||||||||||||||||||||||
Sbjct: 297 gtgctgcccgctgctgaatgggctcgttgacctcgaggcggccgtgtgcctctgcac 353
>gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.C09, mRNA sequence
Length = 1035
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 37 acgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgct 83
||||||||| |||| ||||||||||||||| |||| ||||||||||
Sbjct: 141 acgtgcccgagggacacgctgaagctgggcgtgtgcctggacctgct 187
>gb|AV925157.1|AV925157 AV925157 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p04 5', mRNA sequence
Length = 563
Score = 52.0 bits (26), Expect = 3e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaagctcaggctcctcaacatcaacctc 219
||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 447 tgcctctgcaccaccatcaagctcaaggcgctcaanatcaacctc 491
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,350
Number of Sequences: 312970
Number of extensions: 152350
Number of successful extensions: 41365
Number of sequences better than 0.5: 212
Number of HSP's better than 0.5 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40898
Number of HSP's gapped (non-prelim): 466
length of query: 730
length of database: 175,134,539
effective HSP length: 19
effective length of query: 711
effective length of database: 169,188,109
effective search space: 120292745499
effective search space used: 120292745499
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)