BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.3
(1842 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. v... 86 5e-015
gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Libr... 78 1e-012
gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedl... 56 4e-006
gb|BE411284.1|BE411284 ISC004.A02F990510 ITEC ISC Barley Le... 52 7e-005
gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 ... 52 7e-005
gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedl... 52 7e-005
gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. v... 48 0.001
gb|CA016903.1|CA016903 HV05M12u HV Hordeum vulgare subsp. v... 48 0.001
gb|AU252310.1|AU252310 AU252310 salt-stressed barley root c... 48 0.001
gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots... 46 0.004
gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green... 46 0.004
gb|AU252315.1|AU252315 AU252315 salt-stressed barley root c... 46 0.004
gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedl... 44 0.016
gb|BF253916.1|BF253916 HVSMEf0002H19f Hordeum vulgare seedl... 42 0.064
gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike... 42 0.064
gb|BM816874.1|BM816874 HB105E09_SK.ab1 HB Hordeum vulgare s... 42 0.064
gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. v... 42 0.064
gb|AL508890.1|AL508890 AL508890 Hordeum vulgare Barke devel... 40 0.25
gb|BE559347.1|BE559347 HV_CEb0024D15f Hordeum vulgare seedl... 40 0.25
gb|BI960198.1|BI960198 HVSMEn0023K16f Hordeum vulgare rachi... 40 0.25
gb|BG301293.2|BG301293 HVSMEb0020I08f Hordeum vulgare seedl... 40 0.25
gb|BF259778.3|BF259778 HVSMEf0020D20f Hordeum vulgare seedl... 40 0.25
gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA li... 40 0.25
gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA li... 40 0.25
gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA li... 40 0.25
gb|AV917102.1|AV917102 AV917102 K. Sato unpublished cDNA li... 40 0.25
gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA li... 40 0.25
gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA li... 40 0.25
gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA li... 40 0.25
gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA li... 40 0.25
gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA li... 40 0.25
gb|AV923347.1|AV923347 AV923347 K. Sato unpublished cDNA li... 40 0.25
gb|AJ435273.1|AJ435273 AJ435273 S00002 Hordeum vulgare subs... 40 0.25
gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA li... 40 0.25
gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA li... 40 0.25
gb|BQ468032.1|BQ468032 HR01L12r HR Hordeum vulgare subsp. v... 40 0.25
gb|BQ470625.1|BQ470625 HX03I16r HX Hordeum vulgare subsp. v... 40 0.25
gb|BQ665420.1|BQ665420 HX03I16u HX Hordeum vulgare subsp. v... 40 0.25
gb|BQ739923.1|BQ739923 HB05B04 HB Hordeum vulgare subsp. vu... 40 0.25
gb|BM378024.2|BM378024 EBem04_SQ004_O23_R embryo, 12 DPA, n... 40 0.25
gb|BM369327.2|BM369327 EBem07_SQ003_E06_R embryo, 28 DPA, n... 40 0.25
gb|BI779203.2|BI779203 EBro01_SQ003_F02_R root, 3 week, hyd... 40 0.25
gb|BQ755057.1|BQ755057 EBed02_SQ003_J13_R endosperm, 8 DPA,... 40 0.25
gb|BQ758724.1|BQ758724 EBma07_SQ002_J15_R maternal, 21 DPA,... 40 0.25
gb|BQ763788.1|BQ763788 EBro03_SQ005_M09_R root, 3 week, wat... 40 0.25
gb|BU972778.1|BU972778 HB22L02r BC Hordeum vulgare subsp. v... 40 0.25
gb|BU982780.1|BU982780 HA27J12r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU994992.1|BU994992 HM08N22r HM Hordeum vulgare subsp. v... 40 0.25
gb|CA006545.1|CA006545 HU13G13u HU Hordeum vulgare subsp. v... 40 0.25
gb|CA009179.1|CA009179 HU13G13r HU Hordeum vulgare subsp. v... 40 0.25
gb|CA011605.1|CA011605 HT03A09r HT Hordeum vulgare subsp. v... 40 0.25
gb|CA015705.1|CA015705 HV12J09u HV Hordeum vulgare subsp. v... 40 0.25
gb|CA023650.1|CA023650 HZ46P09r HZ Hordeum vulgare subsp. v... 40 0.25
gb|CA024527.1|CA024527 HZ49I23r HZ Hordeum vulgare subsp. v... 40 0.25
gb|CA028447.1|CA028447 HZ61P23r HZ Hordeum vulgare subsp. v... 40 0.25
gb|CB881132.1|CB881132 HM08N22w HM Hordeum vulgare subsp. v... 40 0.25
gb|CV056681.1|CV056681 BNEL1E1 Barley EST endosperm library... 40 0.25
gb|CV058216.1|CV058216 BNEL35f11 Barley EST endosperm libra... 40 0.25
gb|CV063618.1|CV063618 BNEL91c9 Barley EST endosperm librar... 40 0.25
gb|AU252323.1|AU252323 AU252323 salt-stressed barley root c... 40 0.25
gb|AY551434.1| Hordeum vulgare subsp. vulgare ent-kaurene o... 40 0.25
>gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. vulgare cDNA clone HV08M10
5-PRIME, mRNA sequence
Length = 550
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 327 tcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcacccacgaccacatcttcgcgt 386
||||||||||||| |||||||| |||||||| ||||||| ||||||||| |||||||||
Sbjct: 338 tcgtgtcgtcgccgagcgccgcgcaggccgtgctgcgcacgcacgaccacgtcttcgcgt 397
Query: 387 cccggcc 393
|||||||
Sbjct: 398 cccggcc 404
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 490 cacgcacctgctcagcaacaagaaggtctactccttccgccatggccgcg 539
||||||||| |||| ||||||||||||| ||||| |||||||| |||||
Sbjct: 501 cacgcaccttctcaccaacaagaaggtccgctcctaccgccatgcccgcg 550
>gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F10, mRNA sequence
Length = 1299
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 327 tcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcacccacgaccacatcttcgcgt 386
||||||||||||| ||||||| |||||||| ||||||| ||||||||| |||||||||
Sbjct: 111 tcgtgtcgtcgccgagcgccgggcaggccgtgctgcgcacgcacgaccacgtcttcgcgt 170
Query: 387 cccggcc 393
|||||||
Sbjct: 171 cccggcc 177
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 490 cacgcacctgctcagcaacaagaaggtctactccttccgccatggccgcgag 541
||||||||| |||| ||||||||||||| ||||| |||||||| |||||||
Sbjct: 274 cacgcaccttctcaccaacaagaaggtccgctcctaccgccatgcccgcgag 325
>gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011B08f, mRNA sequence
Length = 994
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1307 gacccggcggtctgggagaagcccgaggagttcatgccggagaggttc 1354
|||||||||| ||||||| |||||| |||||| ||||||||||||||
Sbjct: 281 gacccggcggcgtgggagaggcccgacgagttcgtgccggagaggttc 328
>gb|BE411284.1|BE411284 ISC004.A02F990510 ITEC ISC Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone ISC004.A02, mRNA sequence
Length = 488
Score = 52.0 bits (26), Expect = 7e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1477 gctcgccaacctcatgtaccatttcgactgggag 1510
|||||||||| | |||||||||||||||||||||
Sbjct: 247 gctcgccaacatgatgtaccatttcgactgggag 214
>gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091B12f, mRNA sequence
Length = 904
Score = 52.0 bits (26), Expect = 7e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 308 ggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcacc 367
||||||||||| || || ||||||| ||||| ||||||| ||||| ||| |||||||
Sbjct: 231 ggcgccgtgccgacactcgtcgtgtcatcgccgcgcgccgctgaggcggtgctgcgcacg 290
Query: 368 cacgaccacatcttcgcgtcccggcc 393
|| |||||| |||| ||||| |||||
Sbjct: 291 catgaccacgtcttggcgtcgcggcc 316
>gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012E10f, mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 7e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 308 ggcgccgtgcccaccctgatcgtgtcgtcgcccagcgccgccgaggccgtgatgcgcacc 367
||||||||||| ||||| ||||||| ||||| ||||||| ||||| ||| |||||||
Sbjct: 322 ggcgccgtgccgaccctcgtcgtgtcatcgccacgcgccgctgaggcggtgctgcgcacg 381
Query: 368 cacgaccacatcttcgcgtcccggcc 393
|| |||||| || | ||||| |||||
Sbjct: 382 catgaccacgtcctggcgtctcggcc 407
>gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. vulgare cDNA clone HA04M20
5-PRIME, mRNA sequence
Length = 630
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1319 tgggagaagcccgaggagttcatgccggagag 1350
||||||||||| |||||||||| |||||||||
Sbjct: 128 tgggagaagccggaggagttcaggccggagag 159
>gb|CA016903.1|CA016903 HV05M12u HV Hordeum vulgare subsp. vulgare cDNA clone HV05M12
3-PRIME, mRNA sequence
Length = 467
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1331 gaggagttcatgccggagaggttc 1354
||||||||||||||||||||||||
Sbjct: 325 gaggagttcatgccggagaggttc 302
>gb|AU252310.1|AU252310 AU252310 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-C03 similar to cytochrome P450
CYP99A1, mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttc 1354
||||||||||||||||||||||||
Sbjct: 611 gaggagttcatgccggagaggttc 634
>gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05H19V 5', mRNA sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggttcatg 1357
|||||||||||||||||| ||||||||
Sbjct: 128 gaggagttcatgccggagcggttcatg 154
>gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0004P09f, mRNA sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 605 gtggacatgagcgaggtgctggcggcgtacaccaacgacgtggtgagccggtcggtgct 663
||||||||||||||| | |||| ||||| | |||||||||||| ||||| |||||||
Sbjct: 217 gtggacatgagcgagctcctgggctcgtacgcgaacgacgtggtgtgccgggcggtgct 275
>gb|AU252315.1|AU252315 AU252315 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-C08 similar to cytochrome P450
CYP99A1, mRNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1331 gaggagttcatgccggagaggtt 1353
|||||||||||||||||||||||
Sbjct: 196 gaggagttcatgccggagaggtt 218
>gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002E08f, mRNA sequence
Length = 850
Score = 44.1 bits (22), Expect = 0.016
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 490 cacgcacctgctcagcaacaagaaggtctactccttccgccatggccgcgagga 543
|||||||||||||||| || |||||| ||||| |||||| |||||||||||
Sbjct: 180 cacgcacctgctcagcgccaggaaggtgcactccctccgccgcggccgcgagga 233
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 342 gcgccgccgaggccgtgatgcgcacccacgaccacatcttcgcgtcccggccg 394
||||||||||||| || ||||||| || |||||| ||||||| || ||||||
Sbjct: 32 gcgccgccgaggcggtcctgcgcacgcaggaccacgtcttcgcctcgcggccg 84
>gb|BF253916.1|BF253916 HVSMEf0002H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002H19f, mRNA sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 599 acggccgtggacatgagcgag 619
|||||||||||||||||||||
Sbjct: 701 acggccgtggacatgagcgag 721
>gb|BI948978.1|BI948978 HVSMEl0011O14f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0011O14f, mRNA sequence
Length = 813
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1208 ctgctgctgccgcactactccaccgccgactgc 1240
||||||||||||||| | ||| |||||||||||
Sbjct: 361 ctgctgctgccgcacgagtcctccgccgactgc 393
>gb|BM816874.1|BM816874 HB105E09_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105E09_SK.ab1 similar to Steroid
17-alpha-monooxygenase,Unspecific monooxygenase, mRNA
sequence
Length = 884
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1490 atgtaccatttcgactgggag 1510
|||||||||||||||||||||
Sbjct: 620 atgtaccatttcgactgggag 640
>gb|BQ662325.1|BQ662325 HS01N10w HS Hordeum vulgare subsp. vulgare cDNA clone HS01N10
3-PRIME, mRNA sequence
Length = 504
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1208 ctgctgctgccgcactactccaccgccgactgc 1240
||||||||||||||| | ||| |||||||||||
Sbjct: 504 ctgctgctgccgcacgagtcctccgccgactgc 472
>gb|AL508890.1|AL508890 AL508890 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10B19V 5',
mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 103 gagcgaggagctggcggcgtacac 126
>gb|BE559347.1|BE559347 HV_CEb0024D15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024D15f, mRNA sequence
Length = 749
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1408 cctgccgttcgggtctgggcgccg 1431
|||||||||||||||||| |||||
Sbjct: 266 cctgccgttcgggtctggccgccg 289
>gb|BI960198.1|BI960198 HVSMEn0023K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023K16f, mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 118 gagcgaggagctggcggcgtacac 141
>gb|BG301293.2|BG301293 HVSMEb0020I08f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0020I08f, mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1334 gagttcatgccggagaggtt 1353
||||||||||||||||||||
Sbjct: 3 gagttcatgccggagaggtt 22
>gb|BF259778.3|BF259778 HVSMEf0020D20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0020D20f, mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1335 agttcatgccggagaggttc 1354
||||||||||||||||||||
Sbjct: 227 agttcatgccggagaggttc 246
>gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m23 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 325 ctgggagagcccagaggagttcatgcctgagcggttcatg 364
>gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p16 5', mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 504 ctgggagagcccagaggagttcatgcctgagcggttcatg 543
>gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c01 5', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 339 ctgggagagcccagaggagttcatgcctgagcggttcatg 378
>gb|AV917102.1|AV917102 AV917102 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20m12 5', mRNA sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 cgccgctccctccctcgccg 193
||||||||||||||||||||
Sbjct: 90 cgccgctccctccctcgccg 109
>gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c01 3', mRNA sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 412 ctgggagagcccagaggagttcatgcctgagcggttcatg 373
>gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j07 3', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 377 ctgggagagcccagaggagttcatgcctgagcggttcatg 338
>gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p16 3', mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 394 ctgggagagcccagaggagttcatgcctgagcggttcatg 355
>gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m23 3', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 409 ctgggagagcccagaggagttcatgcctgagcggttcatg 370
>gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b09 3', mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 413 ctgggagagcccagaggagttcatgcctgagcggttcatg 374
>gb|AV923347.1|AV923347 AV923347 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12m07 5', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 cgccgctccctccctcgccg 193
||||||||||||||||||||
Sbjct: 90 cgccgctccctccctcgccg 109
>gb|AJ435273.1|AJ435273 AJ435273 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200083F08F1, mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.25
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Plus
Query: 1397 gacttcaggtacctgccgttcgg-gtctgggcgccggatctgccccgg 1443
||||||||||||||||| ||||| ||| || ||||||| |||||||||
Sbjct: 72 gacttcaggtacctgcccttcggcgtc-ggccgccggagctgccccgg 118
>gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33d19 5', mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 540 ctgggagagcccagaggagttcatgcctgagcggttcatg 579
>gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34j09 3', mRNA sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 1318 ctgggagaagcccgaggagttcatgccggagaggttcatg 1357
|||||||| || |||||||||||||| ||| ||||||||
Sbjct: 376 ctgggagagcccagaggagttcatgcctgagcggttcatg 337
>gb|BQ468032.1|BQ468032 HR01L12r HR Hordeum vulgare subsp. vulgare cDNA clone HR01L12
5-PRIME, mRNA sequence
Length = 463
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1408 cctgccgttcgggtctgggcgccg 1431
|||||||||||||||||| |||||
Sbjct: 433 cctgccgttcgggtctggccgccg 410
>gb|BQ470625.1|BQ470625 HX03I16r HX Hordeum vulgare subsp. vulgare cDNA clone HX03I16
5-PRIME, mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 125 gagcgaggagctggcggcgtacac 148
>gb|BQ665420.1|BQ665420 HX03I16u HX Hordeum vulgare subsp. vulgare cDNA clone HX03I16
3-PRIME, mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 446 gagcgaggagctggcggcgtacac 423
>gb|BQ739923.1|BQ739923 HB05B04 HB Hordeum vulgare subsp. vulgare cDNA clone HB05B04 similar
to NP_194335.1| (NM_118738) putative leucine-rich-repeat
protein [Arabidopsis thaliana] gi|7485831|pir|T04260
hypothetical protein F20B18.160 - Arabidopsis thaliana
gi|4538934..., mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1108 ggagaagaagctggacatga 1127
||||||||||||||||||||
Sbjct: 281 ggagaagaagctggacatga 300
>gb|BM378024.2|BM378024 EBem04_SQ004_O23_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_O23 5', mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 cgccgctccctccctcgccg 193
||||||||||||||||||||
Sbjct: 58 cgccgctccctccctcgccg 77
>gb|BM369327.2|BM369327 EBem07_SQ003_E06_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_E06 5', mRNA sequence
Length = 443
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 119 gagcgaggagctggcggcgtacac 142
>gb|BI779203.2|BI779203 EBro01_SQ003_F02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_F02 5', mRNA sequence
Length = 468
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 cgccgctccctccctcgccg 193
||||||||||||||||||||
Sbjct: 89 cgccgctccctccctcgccg 108
>gb|BQ755057.1|BQ755057 EBed02_SQ003_J13_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_J13 5', mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 99 gagcgaggagctggcggcgtacac 122
>gb|BQ758724.1|BQ758724 EBma07_SQ002_J15_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_J15 5', mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.25
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Plus
Query: 1397 gacttcaggtacctgccgttcgg-gtctgggcgccggatctgccccgg 1443
||||||||||||||||| ||||| ||| || ||||||| |||||||||
Sbjct: 241 gacttcaggtacctgcccttcggcgtc-ggccgccggagctgccccgg 287
>gb|BQ763788.1|BQ763788 EBro03_SQ005_M09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_M09 5', mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 cgccgctccctccctcgccg 193
||||||||||||||||||||
Sbjct: 85 cgccgctccctccctcgccg 104
>gb|BU972778.1|BU972778 HB22L02r BC Hordeum vulgare subsp. vulgare cDNA clone HB22L02
5-PRIME, mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1329 ccgaggagttcatgccggagaggt 1352
|||||||||||| |||||||||||
Sbjct: 60 ccgaggagttcaggccggagaggt 83
>gb|BU982780.1|BU982780 HA27J12r HA Hordeum vulgare subsp. vulgare cDNA clone HA27J12
5-PRIME, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 126 gagcgaggagctggcggcgtacac 149
>gb|BU994992.1|BU994992 HM08N22r HM Hordeum vulgare subsp. vulgare cDNA clone HM08N22
5-PRIME, mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 137 gagcgaggagctggcggcgtacac 160
>gb|CA006545.1|CA006545 HU13G13u HU Hordeum vulgare subsp. vulgare cDNA clone HU13G13
3-PRIME, mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 459 gagcgaggagctggcggcgtacac 436
>gb|CA009179.1|CA009179 HU13G13r HU Hordeum vulgare subsp. vulgare cDNA clone HU13G13
5-PRIME, mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 613 gagcgaggtgctggcggcgtacac 636
|||||||| |||||||||||||||
Sbjct: 45 gagcgaggagctggcggcgtacac 68
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 343,543
Number of Sequences: 312970
Number of extensions: 343543
Number of successful extensions: 116634
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 116524
Number of HSP's gapped (non-prelim): 114
length of query: 1842
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1823
effective length of database: 169,188,109
effective search space: 308429922707
effective search space used: 308429922707
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)