BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG299548.2|BG299548 HVSMEa0020L05f Hordeum vulgare seedl... 359 1e-097
gb|BU994638.1|BU994638 HM07L09r HM Hordeum vulgare subsp. v... 359 1e-097
gb|BU995510.1|BU995510 HM10H13r HM Hordeum vulgare subsp. v... 359 1e-097
gb|CA007997.1|CA007997 HU09J17r HU Hordeum vulgare subsp. v... 359 1e-097
gb|CA013740.1|CA013740 HT09F16r HT Hordeum vulgare subsp. v... 210 7e-053
gb|BJ477441.1|BJ477441 BJ477441 K. Sato unpublished cDNA li... 127 8e-028
gb|BU994050.1|BU994050 HM05I13r HM Hordeum vulgare subsp. v... 117 8e-025
gb|CA013566.1|CA013566 HT08N17r HT Hordeum vulgare subsp. v... 115 3e-024
emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative ... 103 1e-020
gb|CB880704.1|CB880704 HM07I13w HM Hordeum vulgare subsp. v... 98 7e-019
gb|CB880169.1|CB880169 HM05L09w HM Hordeum vulgare subsp. v... 96 3e-018
gb|AV924725.1|AV924725 AV924725 K. Sato unpublished cDNA li... 88 7e-016
dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, comple... 88 7e-016
dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, ... 88 7e-016
gb|BF620729.3|BF620729 HVSMEc0020L05f Hordeum vulgare seedl... 86 3e-015
gb|BF259636.2|BF259636 HVSMEf0019N17f Hordeum vulgare seedl... 84 1e-014
gb|BG367597.1|BG367597 HVSMEi0012O03f Hordeum vulgare 20 DA... 84 1e-014
gb|BM816691.1|BM816691 HB01E06_T3.ab1 HB Hordeum vulgare su... 84 1e-014
gb|BF257877.2|BF257877 HVSMEf0014B21f Hordeum vulgare seedl... 76 3e-012
gb|AL500148.1|AL500148 AL500148 Hordeum vulgare Barke etiol... 70 2e-010
gb|BI779631.2|BI779631 EBro01_SQ004_K02_R root, 3 week, hyd... 70 2e-010
gb|BM443141.2|BM443141 EBro02_SQ002_N03_R root, 3 week, hyd... 70 2e-010
gb|BI777481.2|BI777481 EBro04_SQ001_F17_R root, 3 week, sal... 70 2e-010
gb|CA010720.1|CA010720 HT08N17u HT Hordeum vulgare subsp. v... 70 2e-010
gb|CB881631.1|CB881631 HM10G14w HM Hordeum vulgare subsp. v... 70 2e-010
gb|BI959427.1|BI959427 HVSMEn0019J24f Hordeum vulgare rachi... 66 3e-009
gb|BQ470652.1|BQ470652 HX03J22r HX Hordeum vulgare subsp. v... 66 3e-009
gb|CA031460.1|CA031460 HX10A17r HX Hordeum vulgare subsp. v... 66 3e-009
gb|BF255497.2|BF255497 HVSMEf0007A08f Hordeum vulgare seedl... 62 4e-008
gb|BM444365.1|BM444365 EBem09_SQ004_P02_R embryo, 1 Day ger... 60 2e-007
gb|AL500474.1|AL500474 AL500474 Hordeum vulgare Barke etiol... 56 2e-006
gb|BE060618.3|BE060618 HVSMEg0012M16f Hordeum vulgare pre-a... 54 1e-005
gb|AV915301.1|AV915301 AV915301 K. Sato unpublished cDNA li... 54 1e-005
gb|BM375587.2|BM375587 EBem06_SQ003_M19_R embryo, 21 DPA, n... 52 4e-005
gb|CA030389.1|CA030389 HX06O15r HX Hordeum vulgare subsp. v... 52 4e-005
gb|BG310017.1|BG310017 HVSMEc0016B05f Hordeum vulgare seedl... 50 2e-004
gb|BM374816.1|BM374816 EBma05_SQ002_P04_R maternal, 12 DPA,... 50 2e-004
gb|AV932404.1|AV932404 AV932404 K. Sato unpublished cDNA li... 50 2e-004
gb|AV932814.1|AV932814 AV932814 K. Sato unpublished cDNA li... 50 2e-004
gb|BJ469034.1|BJ469034 BJ469034 K. Sato unpublished cDNA li... 50 2e-004
gb|BJ472010.1|BJ472010 BJ472010 K. Sato unpublished cDNA li... 50 2e-004
gb|CA006886.1|CA006886 HU05P20r HU Hordeum vulgare subsp. v... 50 2e-004
gb|CA022655.1|CA022655 HZ43P13r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|BE214517.2|BE214517 HV_CEb0003K24f Hordeum vulgare seedl... 46 0.002
gb|BE420614.1|BE420614 HWM000.G03 ITEC HWM Barley Leaf Libr... 44 0.009
gb|AL509094.1|AL509094 AL509094 Hordeum vulgare Barke devel... 44 0.009
gb|BF263559.2|BF263559 HV_CEa0007B01f Hordeum vulgare seedl... 44 0.009
gb|BJ449937.1|BJ449937 BJ449937 K. Sato unpublished cDNA li... 44 0.009
gb|BJ451367.1|BJ451367 BJ451367 K. Sato unpublished cDNA li... 44 0.009
gb|BJ457356.1|BJ457356 BJ457356 K. Sato unpublished cDNA li... 44 0.009
gb|BJ458863.1|BJ458863 BJ458863 K. Sato unpublished cDNA li... 44 0.009
gb|CB877692.1|CB877692 HP05N14T HP Hordeum vulgare subsp. v... 44 0.009
gb|AL507413.1|AL507413 AL507413 Hordeum vulgare Barke devel... 42 0.037
gb|BF620771.2|BF620771 HVSMEc0020M23f Hordeum vulgare seedl... 42 0.037
gb|BG365054.1|BG365054 HVSMEi0001A24f Hordeum vulgare 20 DA... 42 0.037
gb|BI959445.1|BI959445 HVSMEn0019L06f Hordeum vulgare rachi... 42 0.037
gb|AW982207.3|AW982207 HVSMEg0002E12f Hordeum vulgare pre-a... 42 0.037
gb|CV064214.1|CV064214 BNEL99d11 Barley EST endosperm libra... 42 0.037
gb|AL507998.1|AL507998 AL507998 Hordeum vulgare Barke devel... 40 0.15
gb|BG300048.1|BG300048 HVSMEb0011C24f Hordeum vulgare seedl... 40 0.15
gb|BG300578.1|BG300578 HVSMEb0017J06f Hordeum vulgare seedl... 40 0.15
gb|AW983058.3|AW983058 HVSMEg0004P07f Hordeum vulgare pre-a... 40 0.15
gb|BG343607.2|BG343607 HVSMEg0006A05f Hordeum vulgare pre-a... 40 0.15
gb|BF262096.3|BF262096 HV_CEa0003B02f Hordeum vulgare seedl... 40 0.15
gb|BF264625.3|BF264625 HV_CEa0009O21f Hordeum vulgare seedl... 40 0.15
gb|AV915502.1|AV915502 AV915502 K. Sato unpublished cDNA li... 40 0.15
gb|BQ465051.1|BQ465051 HU02I05r HU Hordeum vulgare subsp. v... 40 0.15
gb|BQ471159.1|BQ471159 HV01F05T HV Hordeum vulgare subsp. v... 40 0.15
gb|BQ471244.1|BQ471244 HV01N01T HV Hordeum vulgare subsp. v... 40 0.15
gb|BQ754153.1|BQ754153 EBca01_SQ003_A08_R carpel, pre-anthe... 40 0.15
gb|BU998306.1|BU998306 HI10K06r HI Hordeum vulgare subsp. v... 40 0.15
gb|CA027398.1|CA027398 HZ58M17r HZ Hordeum vulgare subsp. v... 40 0.15
gb|CK123759.1|CK123759 BES1824105e14 BES1824 Hordeum vulgar... 40 0.15
gb|CK124060.1|CK124060 BES1824106n17 BES1824 Hordeum vulgar... 40 0.15
>gb|BG299548.2|BG299548 HVSMEa0020L05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0020L05f, mRNA sequence
Length = 800
Score = 359 bits (181), Expect = 1e-097
Identities = 277/309 (89%)
Strand = Plus / Minus
Query: 667 ccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgc 726
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 472 ccgtaggtgtagagctggtccgtgtagttgttgatggccccgacgacgcacatcccctgc 413
Query: 727 tggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttggggggtgttg 786
| || || || |||||||||||||| || | | |||||||||||| | ||||||||||
Sbjct: 412 tccccgcgggagttgtggcagtcccgtgagaagtcgaagttgcagacgttgggggtgttg 353
Query: 787 gcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacgggcac 846
||||||||||||||||||||||||||||| | | |||| | ||||||||||||||||
Sbjct: 352 gcgtagtggagcgggctggcccagtggtaccggaaccgcatcgtgtccgcccacgggcac 293
Query: 847 accgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgccgccgccgcc 906
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 292 accgtcgacagctccccgccggccgactccggcagcagctcctgcaccgccgccgccgcg 233
Query: 907 ttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttccccac 966
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 232 tcctccgacaggtacctctcggcgaccttgcagaccatgatgtggccctccttgccccag 173
Query: 967 gcgccggcg 975
||| |||||
Sbjct: 172 gcgtcggcg 164
Score = 190 bits (96), Expect = 7e-047
Identities = 169/192 (88%), Gaps = 1/192 (0%)
Strand = Plus / Minus
Query: 460 ctcttgttgtagaagtccttgatcgccgtatcaataatgctgacatccc-acacgtgatg 518
|||||||||||||||||||| || |||| || || ||||||||||||| ||||||| ||
Sbjct: 689 ctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgacatccccacacgtggtg 630
Query: 519 gaggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttc 578
|||||| || ||||| ||||||||||| || ||||||||||| ||||||||||| || ||
Sbjct: 629 gaggttggccttcctgcggtaccagtgcaccgtgatggtgttgccgccctcgtcctcctc 570
Query: 579 gaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggct 638
| |||| ||||||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 569 gtagccgacgtgcagcggctggtgcacgtcccccacgaagtgcgccaggaacatgaggct 510
Query: 639 ctccgtcaggtt 650
||||||||||||
Sbjct: 509 ctccgtcaggtt 498
>gb|BU994638.1|BU994638 HM07L09r HM Hordeum vulgare subsp. vulgare cDNA clone HM07L09
5-PRIME, mRNA sequence
Length = 648
Score = 359 bits (181), Expect = 1e-097
Identities = 277/309 (89%)
Strand = Plus / Minus
Query: 667 ccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgc 726
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 508 ccgtaggtgtagagctggtccgtgtagttgttgatggccccgacgacgcacatcccctgc 449
Query: 727 tggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttggggggtgttg 786
| || || || |||||||||||||| || | | |||||||||||| | ||||||||||
Sbjct: 448 tccccgcgggagttgtggcagtcccgtgagaagtcgaagttgcagacgttgggggtgttg 389
Query: 787 gcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacgggcac 846
||||||||||||||||||||||||||||| | | |||| | ||||||||||||||||
Sbjct: 388 gcgtagtggagcgggctggcccagtggtaccggaaccgcatcgtgtccgcccacgggcac 329
Query: 847 accgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgccgccgccgcc 906
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 328 accgtcgacagctccccgccggccgactccggcagcagctcctgcaccgccgccgccgcg 269
Query: 907 ttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttccccac 966
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 268 tcctccgacaggtacctctcggcgaccttgcagaccatgatgtggccctccttgccccag 209
Query: 967 gcgccggcg 975
||| |||||
Sbjct: 208 gcgtcggcg 200
Score = 117 bits (59), Expect = 8e-025
Identities = 102/115 (88%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 537 gtaccagtggacggtgatggtgttaccgccctcgtcatcttcgaagcctacgtgcagcgg 596
||||||||| || ||||||||||| ||||||||||| || ||| |||| |||||||||||
Sbjct: 648 gtaccagtgcaccgtgatggtgttgccgccctcgtcctcctcgtagccgacgtgcagcgg 589
Query: 597 ctggtggacgt-cgccgacgaagtgtgccaggaacatcaggctctccgtcaggtt 650
|||||| |||| | || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 588 ctggtgcacgtccccccacgaagtgcgccaggaacatgaggctctccgtcaggtt 534
>gb|BU995510.1|BU995510 HM10H13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H13
5-PRIME, mRNA sequence
Length = 570
Score = 359 bits (181), Expect = 1e-097
Identities = 277/309 (89%)
Strand = Plus / Minus
Query: 667 ccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgc 726
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 508 ccgtaggtgtagagctggtccgtgtagttgttgatggccccgacgacgcacatcccctgc 449
Query: 727 tggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttggggggtgttg 786
| || || || |||||||||||||| || | | |||||||||||| | ||||||||||
Sbjct: 448 tccccgcgggagttgtggcagtcccgtgagaagtcgaagttgcagacgttgggggtgttg 389
Query: 787 gcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacgggcac 846
||||||||||||||||||||||||||||| | | |||| | ||||||||||||||||
Sbjct: 388 gcgtagtggagcgggctggcccagtggtaccggaaccgcatcgtgtccgcccacgggcac 329
Query: 847 accgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgccgccgccgcc 906
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 328 accgtcgacagctccccgccggccgactccggcagcagctcctgcaccgccgccgccgcg 269
Query: 907 ttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttccccac 966
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 268 tcctccgacaggtacctctcggcgaccttgcagaccatgatgtggccctccttgccccag 209
Query: 967 gcgccggcg 975
||| |||||
Sbjct: 208 gcgtcggcg 200
Score = 58.0 bits (29), Expect = 6e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 614 cgaagtgtgccaggaacatcaggctctccgtcaggtt 650
||||||| ||||||||||| |||||||||||||||||
Sbjct: 570 cgaagtgcgccaggaacatgaggctctccgtcaggtt 534
>gb|CA007997.1|CA007997 HU09J17r HU Hordeum vulgare subsp. vulgare cDNA clone HU09J17
5-PRIME, mRNA sequence
Length = 569
Score = 359 bits (181), Expect = 1e-097
Identities = 277/309 (89%)
Strand = Plus / Minus
Query: 667 ccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgc 726
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 513 ccgtaggtgtagagctggtccgtgtagttgttgatggccccgacgacgcacatcccctgc 454
Query: 727 tggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttggggggtgttg 786
| || || || |||||||||||||| || | | |||||||||||| | ||||||||||
Sbjct: 453 tccccgcgggagttgtggcagtcccgtgagaagtcgaagttgcagacgttgggggtgttg 394
Query: 787 gcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacgggcac 846
||||||||||||||||||||||||||||| | | |||| | ||||||||||||||||
Sbjct: 393 gcgtagtggagcgggctggcccagtggtaccggaaccgcatcgtgtccgcccacgggcac 334
Query: 847 accgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgccgccgccgcc 906
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 333 accgtcgacagctccccgccggccgactccggcagcagctcctgcaccgccgccgccgcg 274
Query: 907 ttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttccccac 966
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 273 tcctccgacaggtacctctcggcgaccttgcagaccatgatgtggccctccttgccccag 214
Query: 967 gcgccggcg 975
||| |||||
Sbjct: 213 gcgtcggcg 205
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 622 gccaggaacatcaggctctccgtcaggtt 650
||||||||||| |||||||||||||||||
Sbjct: 567 gccaggaacatgaggctctccgtcaggtt 539
>gb|CA013740.1|CA013740 HT09F16r HT Hordeum vulgare subsp. vulgare cDNA clone HT09F16
5-PRIME, mRNA sequence
Length = 632
Score = 210 bits (106), Expect = 7e-053
Identities = 181/206 (87%)
Strand = Plus / Minus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| || | ||||||||||||||||||||| || |||| || || |||||||||
Sbjct: 438 accatggtgtcgaggctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgaca 379
Query: 505 tcccacacgtgatggaggtttgctttcctccggtaccagtggacggtgatggtgttaccg 564
||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||
Sbjct: 378 tcccacacgtggtggaggttggccttcctgcggtaccagtgcaccgtgatggtgttgccg 319
Query: 565 ccctcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgcc 624
|||||||| || ||| |||| ||||||||||||||||| ||||| || |||||||| |||
Sbjct: 318 ccctcgtcctcctcgtagccgacgtgcagcggctggtgcacgtcccccacgaagtgcgcc 259
Query: 625 aggaacatcaggctctccgtcaggtt 650
|||||||| |||||||||||||||||
Sbjct: 258 aggaacatgaggctctccgtcaggtt 233
Score = 208 bits (105), Expect = 3e-052
Identities = 174/197 (88%)
Strand = Plus / Minus
Query: 667 ccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgc 726
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 207 ccgtaggtgtagagctggtccgtgtagttgttgatggccccgacgacgcacatcccctgc 148
Query: 727 tggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttggggggtgttg 786
| || || || |||||||||||||| || | | |||||||||||| | ||||||||||
Sbjct: 147 tccccgcgggagttgtggcagtcccgtgagaagtcgaagttgcagacgttgggggtgttg 88
Query: 787 gcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacgggcac 846
||||||||||||||||||||||||||||| | | |||| | ||||||||||||||||
Sbjct: 87 gcgtagtggagcgggctggcccagtggtaccggaaccgcatcgtgtccgcccacgggcac 28
Query: 847 accgtcgacagctcccc 863
|||||||||||||||||
Sbjct: 27 accgtcgacagctcccc 11
Score = 63.9 bits (32), Expect = 1e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 269 aataatcatctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaat 328
||||||||||||| ||||| |||| ||| ||||||||||||| ||||||||||| |
Sbjct: 614 aataatcatctcccagagtaatgttctgcaccacatctttgtatgcgtagttgcacgcca 555
Query: 329 aatggatgctctcaatcgcatagtcgttcgcgcaggtcgc 368
| |||||||| ||||| |||||||| |||||||||||
Sbjct: 554 ggtttatgctctcgatcgcgtagtcgtttgcgcaggtcgc 515
>gb|BJ477441.1|BJ477441 BJ477441 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41g12 3', mRNA sequence
Length = 597
Score = 127 bits (64), Expect = 8e-028
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| || | ||||||||||||||||||||| || |||| || || |||||||||
Sbjct: 468 accatggtgtcgaggctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgaca 527
Query: 505 tcccacacgtgatggaggtttgctttcctccggtaccagtggacggtgatggtgttaccg 564
||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||
Sbjct: 528 tcccacacgtggtggaggttggccttcctgcggtaccagtgcaccgtgatggtgttgccg 587
Query: 565 ccctcgtc 572
||||||||
Sbjct: 588 ccctcgtc 595
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 261 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 320
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 321 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 380
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 381 gcgcaggtcgc 391
>gb|BU994050.1|BU994050 HM05I13r HM Hordeum vulgare subsp. vulgare cDNA clone HM05I13
5-PRIME, mRNA sequence
Length = 558
Score = 117 bits (59), Expect = 8e-025
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| || | ||||||||||||||||||||| || |||| || || |||||||||
Sbjct: 129 accatggtgtcgaggctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgaca 70
Query: 505 tcccacacgtgatggaggtttgctttcctccggtaccagtggacggtgatggtgttaccg 564
||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||| |||
Sbjct: 69 tcccacacgtggtggaggttggccttcctgcggtaccagtgcaccgtgatggtgttgccg 10
Query: 565 ccc 567
|||
Sbjct: 9 ccc 7
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 336 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 277
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 276 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 217
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 216 gcgcaggtcgc 206
>gb|CA013566.1|CA013566 HT08N17r HT Hordeum vulgare subsp. vulgare cDNA clone HT08N17
5-PRIME, mRNA sequence
Length = 589
Score = 115 bits (58), Expect = 3e-024
Identities = 169/198 (85%), Gaps = 6/198 (3%)
Strand = Plus / Minus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| || | ||||||||||||||||||||| || |||| || || |||||||||
Sbjct: 200 accatggtgtcgaggctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgaca 141
Query: 505 tcccacacgtgatggaggtttgctttcctccggtaccagtggacggtgatggtgttaccg 564
||||||||||| |||||||| || |||||| ||||| || | || || |||||||| |||
Sbjct: 140 tcccacacgtggtggaggtt-gccttcctc-ggtac-ag-gcaccgt-atggtgttgccg 86
Query: 565 ccctcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgcc 624
|||||||| || ||| |||| ||||||||||||||||| || || || |||||||| |||
Sbjct: 85 ccctcgtcctcctcgtagccgacgtgcagcggctggtgcacatcccccacgaagtgcgcc 26
Query: 625 aggaacatcaggctctcc 642
|||||||| |||||||||
Sbjct: 25 aggaacat-aggctctcc 9
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 407 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 348
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 347 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 288
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 287 gcgcaggtcgc 277
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene)
Length = 1139
Score = 103 bits (52), Expect = 1e-020
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcag 647
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 502 gtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctctccgtccg 443
Query: 648 gttatacg 655
|||||||
Sbjct: 442 attatacg 435
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct: 171 tcggcgatcttgcaggtcatgtagtgcccctccttgccccacgc 128
>gb|CB880704.1|CB880704 HM07I13w HM Hordeum vulgare subsp. vulgare cDNA clone HM07I13
3-PRIME, mRNA sequence
Length = 559
Score = 97.6 bits (49), Expect = 7e-019
Identities = 110/129 (85%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| || | ||||||||||||||||||||| || |||| || || |||||||||
Sbjct: 430 accatggtgtcgaggctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgaca 489
Query: 505 tcccacacgtgatggaggtttgctttcctccggtaccagtgga-cggtgatggtgttacc 563
||||||||||| |||||||| || ||||| ||| ||||| | ||||||||||||| ||
Sbjct: 490 tcccacacgtggtggaggttggccttcctgcgggtacagtgcaccggtgatggtgttgcc 549
Query: 564 gccctcgtc 572
|||||||||
Sbjct: 550 gccctcgtc 558
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 223 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 282
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 283 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 342
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 343 gcgcaggtcgc 353
>gb|CB880169.1|CB880169 HM05L09w HM Hordeum vulgare subsp. vulgare cDNA clone HM05L09
3-PRIME, mRNA sequence
Length = 571
Score = 95.6 bits (48), Expect = 3e-018
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| || | ||||||||||||||||||||| || |||| || || |||||||||
Sbjct: 472 accatggtgtcgaggctcttgttgtagaagtccttcatgaccgtgtcgatgatgctgaca 531
Query: 505 tcccacacgtgatggaggtttgctttcctccggtaccagt 544
||||||||||| |||||||| || ||||| ||||||||||
Sbjct: 532 tcccacacgtggtggaggttggccttcctgcggtaccagt 571
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 265 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 324
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 325 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 384
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 385 gcgcaggtcgc 395
>gb|AV924725.1|AV924725 AV924725 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16l09 5', mRNA sequence
Length = 601
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcag 647
|||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 293 gtgcagtggctggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtcgg 234
Query: 648 gttatacg 655
|| |||||
Sbjct: 233 gtcatacg 226
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds
Length = 1180
Score = 87.7 bits (44), Expect = 7e-016
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcag 647
||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 495 gtgcatcggctggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtcgg 436
Query: 648 gtta 651
||||
Sbjct: 435 gtta 432
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 164 tcggcgatcttgcaggtcatgtagtggccctccttgccccacgc 121
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcaca 718
|||||||||||||| |||||||| |||||||
Sbjct: 401 gtgtagttgttgatggccccgaccacgcaca 371
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds
Length = 1283
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcag 647
|||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 523 gtgcagtggctggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtcgg 464
Query: 648 gttatacg 655
|| |||||
Sbjct: 463 gtcatacg 456
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct: 192 tcggcgatcttgcaggtcatgtagtgcccctccttgccccacgc 149
>gb|BF620729.3|BF620729 HVSMEc0020L05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020L05f, mRNA sequence
Length = 804
Score = 85.7 bits (43), Expect = 3e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 912 cgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttccccacgcgcc 971
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||| |
Sbjct: 231 cgacaggtacctctcggcgaccttgcagaccatgatgtggccctcctagccccaggcgtc 172
Query: 972 ggcgagg 978
|||||||
Sbjct: 171 ggcgagg 165
Score = 75.8 bits (38), Expect = 3e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 674 tgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgct 727
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 469 tgtaaagctggtccgtgtagttgttgaaggccccgacgacgcacatcccctgct 416
>gb|BF259636.2|BF259636 HVSMEf0019N17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019N17f, mRNA sequence
Length = 755
Score = 83.8 bits (42), Expect = 1e-014
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 474 gtgcatcggctggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtc 417
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcaca 718
|||||||||||||| |||||||| |||||||
Sbjct: 380 gtgtagttgttgatggccccgaccacgcaca 350
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct: 143 tcggcgatcttgcaggtcatgtagtgtccctccttgccccacgc 100
>gb|BG367597.1|BG367597 HVSMEi0012O03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012O03f, mRNA sequence
Length = 711
Score = 83.8 bits (42), Expect = 1e-014
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 477 gtgcatcggctggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtc 420
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcaca 718
|||||||||||||| |||||||| |||||||
Sbjct: 383 gtgtagttgttgatggccccgaccacgcaca 353
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct: 146 tcggcgatcttgcaggtcatgtagtgtccctccttgccccacgc 103
>gb|BM816691.1|BM816691 HB01E06_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01E06_T3.ab1 similar to ESTs
D48949(S15541),AU097625(S15541) correspond to a region
of the predicted gene. Similar to Arabidopsis thaliana
chromosome I BAC T22E19; putative bifunctional nuclease
(AC016447) [Oryza sativa], mRNA sequence
Length = 837
Score = 83.8 bits (42), Expect = 1e-014
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 200 gtgcatcggctggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtc 143
>gb|BF257877.2|BF257877 HVSMEf0014B21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014B21f, mRNA sequence
Length = 572
Score = 75.8 bits (38), Expect = 3e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 136 gtgcatcgggtggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtc 79
>gb|AL500148.1|AL500148 AL500148 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05C05r 3', mRNA sequence
Length = 609
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 283 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 342
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 343 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 402
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 403 gcgcaggtcgc 413
Score = 56.0 bits (28), Expect = 2e-006
Identities = 95/117 (81%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 445 accatggtatccatgctcttgttgtagaagtccttgatcgccgtatcaataatgctgaca 504
|||||||| |||| |||||||||||| || ||||| | |||| || || |||||||||
Sbjct: 490 accatggtgtccaagctcttgttgtanaaatccttcaagaccgtgtcgatgatgctgaca 549
Query: 505 tcccacacgtgat-ggaggtttgctttcctccggtaccagtggacggtgatggtgtt 560
|||||||| || | ||| ||| || ||||| ||||| || || || |||||||||||
Sbjct: 550 tcccacacntggtgggangttggccttcctgcggtaacaatgcaccgtgatggtgtt 606
>gb|BI779631.2|BI779631 EBro01_SQ004_K02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_K02 5', mRNA sequence
Length = 474
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 599 ggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
|||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 474 ggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtc 428
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 154 tcggcgatcttgcaggtcatgtagtggccctccttgccccacgc 111
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcaca 718
|||||||||||||| |||||||| |||||||
Sbjct: 391 gtgtagttgttgatggccccgaccacgcaca 361
>gb|BM443141.2|BM443141 EBro02_SQ002_N03_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_N03 5', mRNA sequence
Length = 466
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 599 ggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
|||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 466 ggtgcacgtcgcccacgaagtgcgccaggaacatcaggctctccgtc 420
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 146 tcggcgatcttgcaggtcatgtagtggccctccttgccccacgc 103
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcaca 718
|||||||||||||| |||||||| |||||||
Sbjct: 383 gtgtagttgttgatggccccgaccacgcaca 353
>gb|BI777481.2|BI777481 EBro04_SQ001_F17_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_F17 5', mRNA sequence
Length = 452
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 266 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 207
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 206 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 147
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 146 gcgcaggtcgc 136
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 445 accatggtatccatgctcttgttgtagaagtcctt 479
|||||||| || | |||||||||||||||||||||
Sbjct: 59 accatggtgtcgaggctcttgttgtagaagtcctt 25
>gb|CA010720.1|CA010720 HT08N17u HT Hordeum vulgare subsp. vulgare cDNA clone HT08N17
3-PRIME, mRNA sequence
Length = 547
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 279 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 338
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 339 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 398
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 399 gcgcaggtcgc 409
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 445 accatggtatccatgctcttgttgtagaagtcctt 479
|||||||| || | |||||||||||||||||||||
Sbjct: 489 accatggtgtcgaggctcttgttgtagaagtcctt 523
>gb|CB881631.1|CB881631 HM10G14w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G14
3-PRIME, mRNA sequence
Length = 480
Score = 69.9 bits (35), Expect = 2e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 238 ctcttctccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgc 297
||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| |||
Sbjct: 264 ctcttctccacaaccgggtaccgggtgaggtaataatcatctcccagagtaatgttctgc 323
Query: 298 tccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttc 357
||||||||||||| ||||||||||| | | |||||||| ||||| ||||||||
Sbjct: 324 accacatctttgtatgcgtagttgcacgccaggtttatgctctcgatcgcgtagtcgttt 383
Query: 358 gcgcaggtcgc 368
|||||||||||
Sbjct: 384 gcgcaggtcgc 394
>gb|BI959427.1|BI959427 HVSMEn0019J24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019J24f, mRNA sequence
Length = 671
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatac 654
|||||||||| |||||| | |||||| | |||||||| ||||||||||||| ||||||||
Sbjct: 483 ggctggtggatgtcgcccaggaagtgcgacaggaacagcaggctctccgtccggttatac 424
Query: 655 g 655
|
Sbjct: 423 g 423
Score = 42.1 bits (21), Expect = 0.037
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 160 ctcggcgatcttgcaggtcatgtagtggccctcctcgccccacgc 116
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcacat 719
|||||||||||||| | ||||||||||||||
Sbjct: 396 gtgtagttgttgatgcctccgacgacgcacat 365
>gb|BQ470652.1|BQ470652 HX03J22r HX Hordeum vulgare subsp. vulgare cDNA clone HX03J22
5-PRIME, mRNA sequence
Length = 480
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatac 654
|||||||||| |||||| | |||||| | |||||||| ||||||||||||| ||||||||
Sbjct: 475 ggctggtggatgtcgcccaggaagtgcgacaggaacagcaggctctccgtccggttatac 416
Query: 655 g 655
|
Sbjct: 415 g 415
Score = 52.0 bits (26), Expect = 4e-005
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 831 gtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctg 890
||||| ||||| |||| ||| || ||||| ||| | ||| |||||||||| ||| |||
Sbjct: 245 gtccggccacgagcacgccgccgcgagctcgccgacggcccactccggcaggagcccctt 186
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
||||||||||| ||||| ||| |||| | |||||||||||||||| |||| |||
Sbjct: 185 caccgccgccgacgcctcgcccgtcaggaaaccctcggcgatcttgcaggtcatgtagtg 126
Query: 951 gccctcctttccccacgc 968
|||||||| ||||||||
Sbjct: 125 gccctcctcgccccacgc 108
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcacat 719
|||||||||||||| | ||||||||||||||
Sbjct: 388 gtgtagttgttgatgcctccgacgacgcacat 357
>gb|CA031460.1|CA031460 HX10A17r HX Hordeum vulgare subsp. vulgare cDNA clone HX10A17
5-PRIME, mRNA sequence
Length = 635
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatac 654
|||||||||| |||||| | |||||| | |||||||| ||||||||||||| ||||||||
Sbjct: 529 ggctggtggatgtcgcccaggaagtgcgacaggaacagcaggctctccgtccggttatac 470
Query: 655 g 655
|
Sbjct: 469 g 469
Score = 52.0 bits (26), Expect = 4e-005
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 831 gtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctg 890
||||| ||||| |||| ||| || ||||| ||| | ||| |||||||||| ||| |||
Sbjct: 299 gtccggccacgagcacgccgccgcgagctcgccgacggcccactccggcaggagcccctt 240
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
||||||||||| ||||| ||| |||| | |||||||||||||||| |||| |||
Sbjct: 239 caccgccgccgacgcctcgcccgtcaggaaaccctcggcgatcttgcaggtcatgtagtg 180
Query: 951 gccctcctttccccacgc 968
|||||||| ||||||||
Sbjct: 179 gccctcctcgccccacgc 162
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcacat 719
|||||||||||||| | ||||||||||||||
Sbjct: 442 gtgtagttgttgatgcctccgacgacgcacat 411
>gb|BF255497.2|BF255497 HVSMEf0007A08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007A08f, mRNA sequence
Length = 881
Score = 61.9 bits (31), Expect = 4e-008
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 588 gtgcagcggctggtggacgtcgccgacgaagtgtgccaggaa-catcaggctctccgtc 645
||||| ||||||||| |||||||| |||||||| |||||||| ||| ||||||||||||
Sbjct: 475 gtgcatcggctggtgcacgtcgcccacgaagtgcgccaggaaacataaggctctccgtc 417
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct: 143 tcggcgatcttgcaggtcatgtagtgtccctccttgccccacgc 100
>gb|BM444365.1|BM444365 EBem09_SQ004_P02_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_P02 5', mRNA sequence
Length = 427
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 598 tggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatacg 655
||||||| |||||| | |||||| | |||||||| ||||||||||||| |||||||||
Sbjct: 419 tggtggatgtcgcccaggaagtgcgacaggaacagcaggctctccgtccggttatacg 362
Score = 42.1 bits (21), Expect = 0.037
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 99 ctcggcgatcttgcaggtcatgtagtggccctcctcgccccacgc 55
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcacat 719
|||||||||||||| | ||||||||||||||
Sbjct: 335 gtgtagttgttgatgcctccgacgacgcacat 304
>gb|AL500474.1|AL500474 AL500474 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M13r 3', mRNA sequence
Length = 424
Score = 56.0 bits (28), Expect = 2e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 269 aataatcatctcctagagtgatgtcttgctccacatctttgtaggcgtagttgca 323
||||||||||||| | ||| |||| ||| ||||||||||||| |||||||||||
Sbjct: 323 aataatcatctcccanagtaatgttctgcaccacatctttgtatgcgtagttgca 377
>gb|BE060618.3|BE060618 HVSMEg0012M16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012M16f, mRNA sequence
Length = 715
Score = 54.0 bits (27), Expect = 1e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatac 654
|||||||| | |||||| | |||||| | ||| |||| ||||||||||||| ||||||||
Sbjct: 500 ggctggtgnatgtcgcccaggaagtgcgacagnaacagcaggctctccgtcgggttatac 441
Query: 655 g 655
|
Sbjct: 440 g 440
Score = 46.1 bits (23), Expect = 0.002
Identities = 109/138 (78%)
Strand = Plus / Minus
Query: 831 gtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctg 890
||||| ||||| |||| ||| || ||||| ||| | ||| |||||||||| ||| |||
Sbjct: 270 gtccggccacgagcacgccgccgcgagctcgccgtcggcccactccggcaggagcccctt 211
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
||||||||| | ||||| ||| |||| | |||||||||||||||| |||| |||
Sbjct: 210 caccgccgcngacgcctcgcccgtcaggaagccctcggcgatcttgcaggtcatgtagtg 151
Query: 951 gccctcctttccccacgc 968
|||||||| ||||||||
Sbjct: 150 gccctcctcgccccacgc 133
>gb|AV915301.1|AV915301 AV915301 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13m18 5', mRNA sequence
Length = 420
Score = 54.0 bits (27), Expect = 1e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtc 645
|||||||||| |||||| | |||||| | |||||||| |||||||||||||
Sbjct: 137 ggctggtggatgtcgcccaggaagtgcgacaggaacagcaggctctccgtc 87
>gb|BM375587.2|BM375587 EBem06_SQ003_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_M19 5', mRNA sequence
Length = 423
Score = 52.0 bits (26), Expect = 4e-005
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 831 gtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctg 890
||||| ||||| |||| ||| || ||||| ||| | ||| |||||||||| ||| |||
Sbjct: 196 gtccggccacgagcacgccgccgcgagctcgccgtcggcccactccggcaggagcccctt 137
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
||||||||||| ||||| ||| |||| | |||||||||||||||| |||| |||
Sbjct: 136 caccgccgccgacgcctcgcccgtcaggaagccctcggcgatcttgcaggtcatgtagtg 77
Query: 951 gccctcctttccccacgc 968
|||||||| ||||||||
Sbjct: 76 gccctcctcgccccacgc 59
>gb|CA030389.1|CA030389 HX06O15r HX Hordeum vulgare subsp. vulgare cDNA clone HX06O15
5-PRIME, mRNA sequence
Length = 329
Score = 52.0 bits (26), Expect = 4e-005
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 831 gtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctg 890
||||| ||||| |||| ||| || ||||| ||| | ||| |||||||||| ||| |||
Sbjct: 261 gtccggccacgagcacgccgccgcgagctcgccgacggcccactccggcaggagcccctt 202
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
||||||||||| ||||| ||| |||| | |||||||||||||||| |||| |||
Sbjct: 201 caccgccgccgacgcctcgcccgtcaggaaaccctcggcgatcttgcaggtcatgtagtg 142
Query: 951 gccctcctttccccacgc 968
|||||||| ||||||||
Sbjct: 141 gccctcctcgccccacgc 124
>gb|BG310017.1|BG310017 HVSMEc0016B05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016B05f, mRNA sequence
Length = 823
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 247 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 191
>gb|BM374816.1|BM374816 EBma05_SQ002_P04_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_P04 5', mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 259 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 203
>gb|AV932404.1|AV932404 AV932404 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3i01 5', mRNA sequence
Length = 680
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 304 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 248
>gb|AV932814.1|AV932814 AV932814 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal4d06 5', mRNA sequence
Length = 634
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 316 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 260
>gb|BJ469034.1|BJ469034 BJ469034 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12l02 5', mRNA sequence
Length = 632
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 314 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 258
>gb|BJ472010.1|BJ472010 BJ472010 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31d12 5', mRNA sequence
Length = 619
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 304 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 248
>gb|CA006886.1|CA006886 HU05P20r HU Hordeum vulgare subsp. vulgare cDNA clone HU05P20
5-PRIME, mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 825 cacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||||||| |||| ||||| || |||||| |||||||||||| |||||||||
Sbjct: 486 cacctggtccggccacacgcacatcgccgacaggtccccgcccgcctcctccggcag 430
>gb|CA022655.1|CA022655 HZ43P13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43P13
5-PRIME, mRNA sequence
Length = 436
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 622 gccaggaacatcaggctctccgtc 645
||||||||||||||||||||||||
Sbjct: 434 gccaggaacatcaggctctccgtc 411
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 688 gtgtagttgttgatagccccgacgacgcaca 718
|||||||||||||| |||||||| |||||||
Sbjct: 374 gtgtagttgttgatggccccgaccacgcaca 344
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 925 tcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct: 137 tcggcgatcttgcaggtcatgtagtgtccctccttgccccacgc 94
>gb|BE214517.2|BE214517 HV_CEb0003K24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003K24f, mRNA sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 987 aaggaggaggaggaggaagacga 1009
|||||||||||||||||||||||
Sbjct: 486 aaggaggaggaggaggaagacga 464
>gb|BE420614.1|BE420614 HWM000.G03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.G03, mRNA sequence
Length = 1228
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 299 aggaggaggaggaggaagacga 278
>gb|AL509094.1|AL509094 AL509094 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10L03V 5',
mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 117 aggaggaggaggaggaagacga 138
>gb|BF263559.2|BF263559 HV_CEa0007B01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007B01f, mRNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 494 aggaggaggaggaggaagacga 473
>gb|BJ449937.1|BJ449937 BJ449937 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak27f07 5', mRNA sequence
Length = 332
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 112 aggaggaggaggaggaagacga 91
>gb|BJ451367.1|BJ451367 BJ451367 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak33l13 5', mRNA sequence
Length = 369
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 149 aggaggaggaggaggaagacga 128
>gb|BJ457356.1|BJ457356 BJ457356 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak27f07 3', mRNA sequence
Length = 315
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 204 aggaggaggaggaggaagacga 225
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,800
Number of Sequences: 312970
Number of extensions: 231800
Number of successful extensions: 97376
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97064
Number of HSP's gapped (non-prelim): 281
length of query: 1074
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1055
effective length of database: 169,188,109
effective search space: 178493454995
effective search space used: 178493454995
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)