BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716368.2.1
(1356 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 242 3e-062
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 222 2e-056
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 206 1e-051
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 202 2e-050
gb|BI958556.1|BI958556 HVSMEn0015J19f Hordeum vulgare rachi... 153 2e-035
gb|BF259315.3|BF259315 HVSMEf0019E07f Hordeum vulgare seedl... 101 6e-020
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 90 2e-016
gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subs... 80 2e-013
gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachi... 72 5e-011
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 66 3e-009
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 66 3e-009
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 66 3e-009
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 66 3e-009
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 66 3e-009
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 58 8e-007
gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedl... 50 2e-004
gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow st... 46 0.003
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 44 0.012
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 44 0.012
gb|BE602242.3|BE602242 HVSMEh0098D05f Hordeum vulgare 5-45 ... 44 0.012
gb|BG367014.2|BG367014 HVSMEi0009N03f Hordeum vulgare 20 DA... 44 0.012
gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DA... 44 0.012
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 44 0.012
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 44 0.012
gb|BU982831.1|BU982831 HA27L21r HA Hordeum vulgare subsp. v... 44 0.012
gb|BU995887.1|BU995887 HM11L01r HM Hordeum vulgare subsp. v... 44 0.012
gb|BI948873.1|BI948873 HVSMEl0011C18f Hordeum vulgare spike... 42 0.047
gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 ... 42 0.047
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 40 0.19
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 40 0.19
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 40 0.19
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 40 0.19
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 40 0.19
gb|AV917087.1|AV917087 AV917087 K. Sato unpublished cDNA li... 40 0.19
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 40 0.19
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 40 0.19
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 40 0.19
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 40 0.19
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 40 0.19
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 40 0.19
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 40 0.19
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 40 0.19
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 40 0.19
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 40 0.19
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 242 bits (122), Expect = 3e-062
Identities = 376/458 (82%), Gaps = 2/458 (0%)
Strand = Plus / Minus
Query: 459 tgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtccagacgccgc 518
|||||||||||||||||||| |||||||||| || | ||| | |||||| ||||||
Sbjct: 462 tgccgttgttgaggcgccacaacgcgccccagtcctgtgtcatttgcgtccaggcgccgc 403
Query: 519 tgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaactcgatga 578
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 402 tgccggcctccttgagggccacggccttgaggtcgccgtcgtcgtcctcgaactcgatca 343
Query: 579 gcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgttgacgccgg 638
| | ||||||| | ||||| | |||||| ||||||||||| || ||||||||||| |
Sbjct: 342 gggtcttgaagtagaaggggttggagccctggtccaccttgaaggcaatgttgacgccag 283
Query: 639 tgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcggagcttgt 698
||||||||| ||||| ||| ||||| | || |||| |||||||| |||||||||||||
Sbjct: 282 ggtacttgcatggcactctcttgtactgcattctgatgacgccgccggcgcggagcttgt 223
Query: 699 cggccatgccgggccgggccatggcgcccatggcggtgccgctcatgtcaaagt-gctcg 757
|||||||||| ||| ||||||||||||| ||||||||||||||||||||| | || ||
Sbjct: 222 cggccatgccaggcttcgccatggcgcccaaggcggtgccgctcatgtcaaaatggcacg 163
Query: 758 acctcgccggggaacagcccgccaggggactggtcggtgattacgatggtcacgggctgg 817
|||||||||| |||| ||| ||| | ||||||||| || | |||||| ||||
Sbjct: 162 -gctcgccggggtacaggttgccggggctcaagtcggtgatgaccacggtcacaggcttc 104
Query: 818 ccggagcacgcggcgttggtcgtgcatttcacctcgtagcaggcgccgcagccctcgcct 877
|||||||| || | |||| ||| |||||| || || ||||| ||||||||||||| |||
Sbjct: 103 ccggagcaggccgagttgctcgagcatttaacatcatagcacgcgccgcagcccttgccc 44
Query: 878 cccctgtacagtggcgtgctcccggcggcgatcatcga 915
| || |||| || | |||||||||||||||||||||
Sbjct: 43 ttcatgaacagaggggagctcccggcggcgatcatcga 6
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 384 ggatggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
||||| |||||||| ||||||| ||||| |||||||||||||||| |||||
Sbjct: 537 ggatgacgttgttgatgacgagcttcctgccggagtcggaggtgagctggagc 485
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 222 bits (112), Expect = 2e-056
Identities = 247/292 (84%)
Strand = Plus / Minus
Query: 459 tgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtccagacgccgc 518
|||||||||||||||||||| |||||||||| || | ||| | |||||| ||||||
Sbjct: 456 tgccgttgttgaggcgccacaacgcgccccagtcctgtgtcatttgcgtccaggcgccgc 397
Query: 519 tgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaactcgatga 578
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 396 tgccggcctccttgagggccacggccttgaggtcgccgtcgtcgtcctcgaactcgatca 337
Query: 579 gcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgttgacgccgg 638
| | ||||||| | ||||| | |||||| |||||| |||| || ||||||||||| |
Sbjct: 336 gggtcttgaagtagaaggggttggagccctggtccaccctgaaggcaatgttgacgccag 277
Query: 639 tgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcggagcttgt 698
||||||||| ||||| ||| ||||| | || |||| |||||||| |||||||||||||
Sbjct: 276 ggtacttgcatggcactctcttgtactgcattctgatgacgccgccggcgcggagcttgt 217
Query: 699 cggccatgccgggccgggccatggcgcccatggcggtgccgctcatgtcaaa 750
|||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 216 cggccatgccaggcttcgccatggcgcccaaggcggtgccgctcatgtcaaa 165
Score = 44.1 bits (22), Expect = 0.012
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 390 cgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
|||||||| |||||| ||||| ||||||| ||||||||||||||
Sbjct: 525 cgttgttgannacgagcttcctgccggagtcgnaggtgagccggagc 479
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 206 bits (104), Expect = 1e-051
Identities = 396/491 (80%), Gaps = 3/491 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| ||||| | ||| ||||||||||| |||
Sbjct: 505 gcgccccagttctgcaccatgggcgtccaggtgccgcagttggcttccatgaggtcgacg 446
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
| | ||||||||||||||||||||||||||||||| ||||| || | |||| | |||||
Sbjct: 445 gtgttgaggtcgccgtcgtcgtcctcgaactcgatcagcacctccaggtagaaggggttg 386
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
| |||||| ||||||||||| || ||||| | ||| | ||||||||| ||||||||| ||
Sbjct: 385 gagccctggtccaccttgaaggcaatgttcatgccagggtacttgcatggcaccctcttg 326
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||||| ||| | |||| || ||||| |||||||||||||| ||| ||||||
Sbjct: 325 tactggatcttgacgataccgctggcccggagtttgtcggccatgccaggcttcgccatg 266
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaa--cag-cccg 778
|||||||||| ||||||||||||||| ||||| || |||||||| || | | | ||||
Sbjct: 265 gcgcccatggaggtgccgctcatgtcgaagtgggcggcctcgccgaggcaggcggccccg 206
Query: 779 ccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtc 838
|| ||| ||| ||||||||| |||| |||| | |||||||||||||| || |||
Sbjct: 205 ccggggcactcgtcggtgatgacgacggtcgccggctggccggagcatgcctggttaccg 146
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctc 898
|||||||| ||||||||||| || |||||||||| ||| || ||||| || | | | ||
Sbjct: 145 gtgcatttaacctcgtagcaagctccgcagcccttgccccctctgtagagcgatgggttc 86
Query: 899 ccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcg 958
||||||||||||||||| ||| ||| || ||||| || |||||||||| ||||||
Sbjct: 85 ccggcggcgatcatcgacgagaagggccggttcccgacagcgctctggtagccacacgcg 26
Query: 959 ccgccgtcgct 969
|| ||||||||
Sbjct: 25 ccaccgtcgct 15
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 202 bits (102), Expect = 2e-050
Identities = 355/437 (81%), Gaps = 3/437 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| ||||| | ||||||||||||||| |||
Sbjct: 489 gcgccccagttctgcaccatgggcgtccaggtgccgcagttggcctccatgaggtcgacg 430
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
| | | ||||||||||||||||||||||||||||| ||||| || | |||| | |||||
Sbjct: 429 gtgttaaggtcgccgtcgtcgtcctcgaactcgatcagcacctccaggtagaaggggttg 370
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
| |||||| ||||||||||| || ||||| | ||| | ||||||||| ||||||||| ||
Sbjct: 369 gagccctggtccaccttgaaggcaatgttcatgccagggtacttgcatggcaccctcttg 310
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||||| ||| | |||| || ||||| |||||||||||||| ||| ||||||
Sbjct: 309 tactggatcttgacgataccgctggcccggagtttgtcggccatgccaggcttcgccatg 250
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaa--cag-cccg 778
|||||||||| ||||||||||||||| ||||| || |||||||| || | | | ||||
Sbjct: 249 gcgcccatggaggtgccgctcatgtcgaagtgggcggcctcgccgaggcaggcggccccg 190
Query: 779 ccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtc 838
|| ||| ||| ||||||||| |||| |||| | |||||||||||||| || |||
Sbjct: 189 ccggggcactcgtcggtgatgacgacggtcgccggctggccggagcatgcctggttaccg 130
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctc 898
|||||||| ||||||||||| || |||||||||| ||| || ||||| || | | | ||
Sbjct: 129 gtgcatttaacctcgtagcaagctccgcagcccttgccccctctgtagagcgatgggttc 70
Query: 899 ccggcggcgatcatcga 915
|||||||||||||||||
Sbjct: 69 ccggcggcgatcatcga 53
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 413 cgggagtcggaggtgagccggagc 436
|||||||||||||||| |||||||
Sbjct: 564 cgggagtcggaggtgacccggagc 541
>gb|BI958556.1|BI958556 HVSMEn0015J19f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015J19f,
mRNA sequence
Length = 649
Score = 153 bits (77), Expect = 2e-035
Identities = 327/408 (80%), Gaps = 3/408 (0%)
Strand = Plus / Minus
Query: 611 tccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctgtacaggatc 670
||||||||||| || ||||| | ||| | ||||||||| ||||||||| ||||| |||||
Sbjct: 631 tccaccttgaaggcaatgttcatgccagggtacttgcatggcaccctcttgtactggatc 572
Query: 671 ctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatggcgcccatg 730
||| | |||| || ||||| |||||||||||||| ||| |||||||||||||||
Sbjct: 571 ttgacgataccgctggcccggagtttgtcggccatgccaggcttcgccatggcgcccatg 512
Query: 731 gcggtgccgctcatgtcaaagtgctcgacctcgccggggaa--cag-cccgccaggggac 787
| ||||||||||||||| ||||| || |||||||| || | | | |||||| ||| ||
Sbjct: 511 gaggtgccgctcatgtcgaagtgggcggcctcgccgaggcaggcggccccgccggggcac 452
Query: 788 tggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgtgcatttc 847
| ||||||||| |||| |||| | |||||||||||||| || ||| ||||||||
Sbjct: 451 tcgtcggtgatgacgacggtcgccggctggccggagcatgcctggttaccggtgcattta 392
Query: 848 acctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcg 907
||||||||||| || |||||||||| ||| || ||||| || | | | |||||||||||
Sbjct: 391 acctcgtagcaagctccgcagcccttgccccctctgtagagcgatgggttcccggcggcg 332
Query: 908 atcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgccgtcg 967
|||||||| ||| ||| || ||||| || |||||||||| |||||||| ||||||
Sbjct: 331 atcatcgacgagaagggccggttcccgacagcgctctggtagccacacgcgccaccgtcg 272
Query: 968 ctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgac 1015
|| |||||||||| || |||||||| ||||| |||||| || |||||
Sbjct: 271 cttccgtcgccgtcgggggcgccgtaatacgtcgcgccgccggctgac 224
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcac 1203
|||||| |||| ||||||||||||||||||
Sbjct: 143 gagcttgcgggagcaagcaatggggctcac 114
>gb|BF259315.3|BF259315 HVSMEf0019E07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0019E07f, mRNA sequence
Length = 853
Score = 101 bits (51), Expect = 6e-020
Identities = 236/295 (80%), Gaps = 2/295 (0%)
Strand = Plus / Minus
Query: 716 gccatggcgcccatggcggtgccgctcatgtcaaagtg-ctcgacctcgccggggaacag 774
||||||||||||| ||||||||||||||||||||| || | || | ||||||||| ||||
Sbjct: 562 gccatggcgcccaaggcggtgccgctcatgtcaaaatggcacggc-tcgccggggtacag 504
Query: 775 cccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgtt 834
||| ||| | ||||||||| || | |||||| |||| |||||||| || | |||
Sbjct: 503 gttgccggggctcaagtcggtgatgaccacggtcacaggcttcccggagcaggccgagtt 444
Query: 835 ggtcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgt 894
| ||| |||||| || || ||||| ||||||||||||| ||| | || |||| || |
Sbjct: 443 gctcgagcatttaacatcatagcacgcgccgcagcccttgcccttcatgaacagagggga 384
Query: 895 gctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgca 954
||||||||||||||||||||| ||| ||| | ||||| || ||||||||||| ||
Sbjct: 383 gctcccggcggcgatcatcgacgagaacggccggtgcccgacagcggtctggtagccaca 324
Query: 955 cgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcg 1009
||| ||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 323 cgctccgccctcgccgccgtcgccgttggggttgccgtagtacgtggcgccggcg 269
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactaggagtgagaggacca 1220
|||||| |||| |||||||||||||||||| || || ||||| ||||
Sbjct: 164 gagcttgcgggagcaagcaatggggctcacaagaagcgagagcacca 118
>gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037A04F1, mRNA sequence
Length = 420
Score = 89.7 bits (45), Expect = 2e-016
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| ||||| | ||| ||||||||||| |||
Sbjct: 110 gcgccccagttctgcaccatgggcgtccaggtgccgcagttggcttccatgaggtcgacg 51
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcac 582
| | ||||||||||||||||||||||||||||||| |||||
Sbjct: 50 gtgttgaggtcgccgtcgtcgtcctcgaactcgatcagcac 10
Score = 79.8 bits (40), Expect = 2e-013
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 333 aggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgt 392
|||||||||| ||||||||||||||||| |||| |||||| | | |||||| |||
Sbjct: 265 aggggtagttaaccaaggagcggtaggtggctccggccttccagctgacggggatgacgt 206
Query: 393 tgttggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 205 tgttgacgacgagcttcctgccggagtcggaggtgagccggagc 162
>gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087A08F1, mRNA sequence
Length = 420
Score = 79.8 bits (40), Expect = 2e-013
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 333 aggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgt 392
|||||||||| ||||||||||||||||| |||| |||||| | | |||||| |||
Sbjct: 204 aggggtagttaaccaaggagcggtaggtggctccggccttccagctgacggggatgacgt 145
Query: 393 tgttggcgacgagcaccctgcgggagtcggaggtgagccggagc 436
||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 144 tgttgacgacgagcttcctgccggagtcggaggtgagccggagc 101
>gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020C08f, mRNA sequence
Length = 737
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
|||||||||||| |||| ||||||||| || |||| |||||| ||| |||||| |
Sbjct: 465 tcaggggtagttcaccagggagcggtacgtggctccggccttccaattggcggggatgac 524
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 525 gttgttgacgacgagcttcctgccggagtcggaggtgagccgga 568
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 548 aggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggtt 600
|||||||||||| |||||||| |||||||||||||| ||| |||||| |||||
Sbjct: 581 aggtcgccgtcgccgtcctcgtactcgatgagcacggcgaggtagtaggggtt 529
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 290 gtgcacttcacctggtagcaggagccgcagccct 257
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 548 aggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggtt 600
|||||||||||| |||||||| |||||||||||||| ||| |||||| |||||
Sbjct: 491 aggtcgccgtcgccgtcctcgtactcgatgagcacggcgaggtagtaggggtt 439
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 200 gtgcacttcacctggtagcaggagccgcagccct 167
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 548 aggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggtt 600
|||||||||||| |||||||| |||||||||||||| ||| |||||| |||||
Sbjct: 236 aggtcgccgtcgccgtcctcgtactcgatgagcacggcgaggtagtaggggtt 184
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 548 aggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggtt 600
|||||||||||| |||||||| |||||||||||||| ||| |||||| |||||
Sbjct: 263 aggtcgccgtcgccgtcctcgtactcgatgagcacggcgaggtagtaggggtt 211
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 548 aggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggtt 600
|||||||||||| |||||||| |||||||||||||| ||| |||||| |||||
Sbjct: 277 aggtcgccgtcgccgtcctcgtactcgatgagcacggcgaggtagtaggggtt 225
Score = 42.1 bits (21), Expect = 0.047
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgtt 393
||||||||| | |||||||||||| |||||||||||| |||| |||||| ||||
Sbjct: 494 gtagttgacgacggagcggtaggtgccgccgggcttccagccggcggggatgacgtt 438
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 548 aggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggtt 600
|||||||||||| |||||||| |||| ||||||||| ||| |||||| |||||
Sbjct: 631 aggtcgccgtcgccgtcctcgtactcaatgagcacggcgaggtagtaggggtt 579
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 340 gtgcacttcacctggtagcaggagccgcagccct 307
>gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D22f, mRNA sequence
Length = 844
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 715 ggccatggcgcccatggcggtgccgctcatgtc 747
|||||||||||| | ||||||||||||||||||
Sbjct: 511 ggccatggcgccgaaggcggtgccgctcatgtc 479
Score = 42.1 bits (21), Expect = 0.047
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 944 tggtagccgcacgcgccgccgtcgctcccgtcgccgt 980
||||| ||||||||||| |||||||| ||| ||||||
Sbjct: 285 tggtatccgcacgcgccaccgtcgctgccggcgccgt 249
>gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_K24 5', mRNA sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 392 ttgttggcgacgagcaccctgcgggagtcggaggtgagccgga 434
|||||||||||||||||| ||| ||| | |||||||||||||
Sbjct: 118 ttgttggcgacgagcaccttgccggaacccgaggtgagccgga 76
>gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080H17f, mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 340 gtgcacttcacctggtagcaggagccgcagccct 307
>gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081A10f, mRNA sequence
Length = 749
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 337 gtgcacttcacctggtagcaggagccgcagccct 304
>gb|BE602242.3|BE602242 HVSMEh0098D05f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098D05f, mRNA sequence
Length = 508
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 699 cggccatgccgggccgggccatggcg 724
||||||||||||| ||||||||||||
Sbjct: 378 cggccatgccggggcgggccatggcg 353
>gb|BG367014.2|BG367014 HVSMEi0009N03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0009N03f, mRNA sequence
Length = 803
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 328 gtgcacttcacctggtagcaggagccgcagccct 295
>gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015B12f, mRNA sequence
Length = 869
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 337 gtgcacttcacctggtagcaggagccgcagccct 304
>gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021D09f, mRNA sequence
Length = 864
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 340 gtgcacttcacctggtagcaggagccgcagccct 307
>gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026K23f, mRNA sequence
Length = 492
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 839 gtgcatttcacctcgtagcaggcgccgcagccct 872
||||| ||||||| |||||||| |||||||||||
Sbjct: 340 gtgcacttcacctggtagcaggagccgcagccct 307
>gb|BU982831.1|BU982831 HA27L21r HA Hordeum vulgare subsp. vulgare cDNA clone HA27L21
5-PRIME, mRNA sequence
Length = 491
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 699 cggccatgccgggccgggccatggcg 724
||||||||||||| ||||||||||||
Sbjct: 228 cggccatgccggggcgggccatggcg 203
>gb|BU995887.1|BU995887 HM11L01r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L01
5-PRIME, mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 699 cggccatgccgggccgggccatggcg 724
||||||||||||| ||||||||||||
Sbjct: 464 cggccatgccggggcgggccatggcg 439
>gb|BI948873.1|BI948873 HVSMEl0011C18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011C18f, mRNA sequence
Length = 831
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 700 ggccatgccgggccgggccatggcg 724
|||||||||||| ||||||||||||
Sbjct: 151 ggccatgccgggtcgggccatggcg 127
>gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M20f, mRNA sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.047
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgtt 393
||||||||| | |||||||||||| |||||||||||| |||| |||||| ||||
Sbjct: 199 gtagttgacgacggagcggtaggtgccgccgggcttccagccggcggggatgacgtt 143
>gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02O05u 3',
mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 432 ggccgggatgaccttgttggcgacgagc 459
>gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019J09f, mRNA sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 111 ggccgggatgaccttgttggcgacgagc 84
>gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014H23f, mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 225 ggccgggatgaccttgttggcgacgagc 198
>gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O10f, mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 443 ggccgggatgaccttgttggcgacgagc 470
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 415 ggccgggatgaccttgttggcgacgagc 388
>gb|AV917087.1|AV917087 AV917087 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l14 5', mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 550 gtcgccgtcgtcgtcctcgaactcgatgagca 581
|||||| ||| ||||||||||||||| |||||
Sbjct: 136 gtcgccctcgccgtcctcgaactcgacgagca 105
>gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26l19 3', mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 453 ggccgggatgaccttgttggcgacgagc 480
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 375 ggccgggatgaccttgttggcgacgagc 348
>gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_H14 5', mRNA sequence
Length = 341
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 82 ggccgggatgaccttgttggcgacgagc 55
>gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_G24 5', mRNA sequence
Length = 535
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 107 ggccgggatgaccttgttggcgacgagc 80
>gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. vulgare cDNA clone HA14H15
5-PRIME, mRNA sequence
Length = 482
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 425 ggccgggatgaccttgttggcgacgagc 452
>gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C12
5-PRIME, mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccat 501
||||||||||||||||||||
Sbjct: 211 gcgccccagttgtgcgccat 192
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 543 ggccgggatgaccttgttggcgacgagc 516
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 40.1 bits (20), Expect = 0.19
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 379 ggccgggatggcgttgttggcgacgagc 406
|||||||||| | |||||||||||||||
Sbjct: 306 ggccgggatgaccttgttggcgacgagc 279
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccat 501
||||||||||||||||||||
Sbjct: 279 gcgccccagttgtgcgccat 260
>emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragment; clone MWG2088.uni
Length = 363
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 482 gcgccccagttgtgcgccat 501
||||||||||||||||||||
Sbjct: 134 gcgccccagttgtgcgccat 153
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,374
Number of Sequences: 312970
Number of extensions: 192374
Number of successful extensions: 56563
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56420
Number of HSP's gapped (non-prelim): 128
length of query: 1356
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1337
effective length of database: 169,188,109
effective search space: 226204501733
effective search space used: 226204501733
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)