BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ463194.1|BJ463194 BJ463194 K. Sato unpublished cDNA li... 44 0.009
gb|BJ467227.1|BJ467227 BJ467227 K. Sato unpublished cDNA li... 44 0.009
gb|BJ473364.1|BJ473364 BJ473364 K. Sato unpublished cDNA li... 44 0.009
gb|BJ473379.1|BJ473379 BJ473379 K. Sato unpublished cDNA li... 44 0.009
gb|BJ473874.1|BJ473874 BJ473874 K. Sato unpublished cDNA li... 44 0.009
gb|BJ474078.1|BJ474078 BJ474078 K. Sato unpublished cDNA li... 44 0.009
gb|BJ476623.1|BJ476623 BJ476623 K. Sato unpublished cDNA li... 44 0.009
gb|BJ476706.1|BJ476706 BJ476706 K. Sato unpublished cDNA li... 44 0.009
gb|BJ477129.1|BJ477129 BJ477129 K. Sato unpublished cDNA li... 44 0.009
gb|BM098922.2|BM098922 EBpi05_SQ002_H03_R pistil, 8 DPA, no... 44 0.009
gb|AV936353.1|AV936353 AV936353 K. Sato unpublished cDNA li... 40 0.14
>gb|BJ463194.1|BJ463194 BJ463194 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26d04 5', mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 263 acaaaaccaaatccccttgacctcccactctccctgtc 226
>gb|BJ467227.1|BJ467227 BJ467227 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26d04 3', mRNA sequence
Length = 601
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 405 acaaaaccaaatccccttgacctcccactctccctgtc 442
>gb|BJ473364.1|BJ473364 BJ473364 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12b21 3', mRNA sequence
Length = 621
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 103 acaaaaccaaatccccttgacctcccactctccctgtc 140
>gb|BJ473379.1|BJ473379 BJ473379 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12c20 3', mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 96 acaaaaccaaatccccttgacctcccactctccctgtc 133
>gb|BJ473874.1|BJ473874 BJ473874 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17h05 3', mRNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 106 acaaaaccaaatccccttgacctcccactctccctgtc 143
>gb|BJ474078.1|BJ474078 BJ474078 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18n12 3', mRNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 103 acaaaaccaaatccccttgacctcccactctccctgtc 140
>gb|BJ476623.1|BJ476623 BJ476623 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal36a18 3', mRNA sequence
Length = 564
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 48 acaaaaccaaatccccttgacctcccactctccctgtc 85
>gb|BJ476706.1|BJ476706 BJ476706 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal36j11 3', mRNA sequence
Length = 440
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 39 acaaaaccaaatccccttgacctcccactctccctgtc 76
>gb|BJ477129.1|BJ477129 BJ477129 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40b09 3', mRNA sequence
Length = 613
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 50 acaaaaccaaatccccttgacctcccactctccctgtc 87
>gb|BM098922.2|BM098922 EBpi05_SQ002_H03_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_H03 5', mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| ||||| || |||||||||||| ||||||||||
Sbjct: 303 acaaaaccaaatccccttgacctcccactctccctgtc 266
>gb|AV936353.1|AV936353 AV936353 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11a09 3', mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctg 539
||||| ||||| || |||||||||||| ||||||||
Sbjct: 50 acaaaaccaaatccccttgacctcccactctccctg 85
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,038
Number of Sequences: 312970
Number of extensions: 85038
Number of successful extensions: 23772
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23761
Number of HSP's gapped (non-prelim): 11
length of query: 990
length of database: 175,134,539
effective HSP length: 19
effective length of query: 971
effective length of database: 169,188,109
effective search space: 164281653839
effective search space used: 164281653839
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)