BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 161 3e-038
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 161 3e-038
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 161 3e-038
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 161 3e-038
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 161 3e-038
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 161 3e-038
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 161 3e-038
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 161 3e-038
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 161 3e-038
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 161 3e-038
gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthe... 155 2e-036
gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. v... 155 2e-036
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 149 1e-034
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 137 5e-031
gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA li... 129 1e-028
gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA li... 129 1e-028
gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA li... 129 1e-028
gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA li... 119 1e-025
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 119 1e-025
gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA li... 117 4e-025
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 109 1e-022
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 90 1e-016
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 90 1e-016
gb|BM101006.1|BM101006 EBpi01_SQ002_J05_R pistil, 1 DPA, no... 56 1e-006
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 56 1e-006
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 56 1e-006
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 56 1e-006
gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa... 50 9e-005
gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA li... 50 9e-005
gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA li... 50 9e-005
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 46 0.001
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 46 0.001
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 46 0.001
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 46 0.001
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 46 0.001
gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA li... 46 0.001
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 46 0.001
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 46 0.001
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 44 0.005
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 44 0.005
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 423 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 364
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 363 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 304
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 303 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 244
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 243 aagaaggaccgggcggcgcggagcaagga 215
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 501 tgcatccttgccttcatgccaacgggatggggcctgctcct 461
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 426 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 367
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 366 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 307
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 306 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 247
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 246 aagaaggaccgggcggcgcggagcaagga 218
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 504 tgcatccttgccttcatgccaacgggatggggcctgctcct 464
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 401 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 342
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 341 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 282
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 281 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 222
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 221 aagaaggaccgggcggcgcggagcaagga 193
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 477 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 418
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 417 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 358
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 357 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 298
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 297 aagaaggaccgggcggcgcggagcaagga 269
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 555 tgcatccttgccttcatgccaacgggatggggcctgctcct 515
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 447 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 388
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 387 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 328
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 327 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 268
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 267 aagaaggaccgggcggcgcggagcaagga 239
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 525 tgcatccttgccttcatgccaacgggatggggcctgctcct 485
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 431 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 372
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 371 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 312
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 311 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 252
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 251 aagaaggaccgggcggcgcggagcaagga 223
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 509 tgcatccttgccttcatgccaacgggatggggcctgctcct 469
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 425 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 366
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 365 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 306
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 305 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 246
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 245 aagaaggaccgggcggcgcggagcaagga 217
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 503 tgcatccttgccttcatgccaacgggatggggcctgctcct 463
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 425 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 366
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 365 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 306
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 305 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 246
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 245 aagaaggaccgggcggcgcggagcaagga 217
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 503 tgcatccttgccttcatgccaacgggatggggcctgctcct 463
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 487 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 428
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 427 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 368
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 367 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 308
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 307 aagaaggaccgggcggcgcggagcaagga 279
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 565 tgcatccttgccttcatgccaacgggatggggcctgctcct 525
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 161 bits (81), Expect = 3e-038
Identities = 177/209 (84%)
Strand = Plus / Minus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 511 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 452
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 451 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 392
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacac 269
||||| |||||||||||||||||| | |||||||||||||| | |||||||| || |||
Sbjct: 391 atgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcac 332
Query: 270 aagaaagaccgagggacgcggagcaagga 298
||||| ||||| | | |||||||||||||
Sbjct: 331 aagaaggaccgggcggcgcggagcaagga 303
>gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_K10 5', mRNA sequence
Length = 440
Score = 155 bits (78), Expect = 2e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 30 tggttccccttcgtgtccgagttccagaccaggatgctcttcaaccaggctttcagcaga 89
Query: 237 ggtctgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaag 296
|| |||||||||||||||||||| || || |||||||| ||||||| || |||| ||||
Sbjct: 90 ggcctgcagatctcccgtatcctcggcggccacaagaaggaccgagccacccggaacaag 149
Query: 297 gagtag 302
||||||
Sbjct: 150 gagtag 155
>gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P09
3-PRIME, mRNA sequence
Length = 541
Score = 155 bits (78), Expect = 2e-036
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 37 tggttccccttcgtgtccgagttccagaccaggatgctcttcaaccaggctttcagcaga 96
Query: 237 ggtctgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaag 296
|| |||||||||||||||||||| || || |||||||| ||||||| || |||| ||||
Sbjct: 97 ggcctgcagatctcccgtatcctcggcggccacaagaaggaccgagccacccggaacaag 156
Query: 297 gagtag 302
||||||
Sbjct: 157 gagtag 162
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 149 bits (75), Expect = 1e-034
Identities = 173/206 (83%)
Strand = Plus / Minus
Query: 93 ctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctcctg 152
||||||||||||||| |||||| || || || ||||||||| | |||||| | || ||
Sbjct: 323 ctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggntgctgctc 264
Query: 153 ttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccaggatg 212
||||| || || || ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 263 ttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcggatg 204
Query: 213 ctgttcaaccaggccttcagcagaggtctgcagatctcccgtatcctgggaggacacaag 272
|| |||||||||||||||||| | |||||||||||||| | |||||||| || ||||||
Sbjct: 203 ctcttcaaccaggccttcagccgtggtctgcagatctcgaggatcctgggtgggcacaag 144
Query: 273 aaagaccgagggacgcggagcaagga 298
|| ||||| | | |||||||||||||
Sbjct: 143 aaggaccgggcggcgcggagcaagga 118
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 137 bits (69), Expect = 5e-031
Identities = 147/173 (84%)
Strand = Plus / Minus
Query: 126 tacgagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggttcccg 185
||||||||| | |||||||| || || ||||| || || || ||||| || |||||||||
Sbjct: 480 tacgagatcatcatggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccg 421
Query: 186 ttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcag 245
|||||||| ||||||||||| ||||||| |||||||||||||||||| | |||||||||
Sbjct: 420 ttcgtgtctgagttccagactcggatgctcttcaaccaggccttcagccgtggtctgcag 361
Query: 246 atctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaagga 298
||||| | |||||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 360 atctcgaggatcctgggtgggcacaagaaggaccgggcggcgcggagcaagga 308
>gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 3', mRNA sequence
Length = 393
Score = 131 bits (66), Expect = 3e-029
Identities = 144/170 (84%)
Strand = Plus / Minus
Query: 129 gagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggttcccgttc 188
|||||| | |||||||| || || ||||| || || || ||||| || ||||||||||||
Sbjct: 392 gagatcatcatggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccgttc 333
Query: 189 gtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatc 248
||||| ||||||||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 332 gtgtctgagttccagactcggatgctcttcaaccaggccttcagccgtggtctgcagatc 273
Query: 249 tcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaagga 298
|| | |||||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 272 tcgaggatcctgggtgggcacaagaaggaccgggcggcgcggagcaagga 223
>gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 3', mRNA sequence
Length = 415
Score = 131 bits (66), Expect = 3e-029
Identities = 144/170 (84%)
Strand = Plus / Minus
Query: 129 gagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggttcccgttc 188
|||||| | |||||||| || || ||||| || || || ||||| || ||||||||||||
Sbjct: 414 gagatcatcatggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccgttc 355
Query: 189 gtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatc 248
||||| ||||||||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 354 gtgtctgagttccagactcggatgctcttcaaccaggccttcagccgtggtctgcagatc 295
Query: 249 tcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaagga 298
|| | |||||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 294 tcgaggatcctgggtgggcacaagaaggaccgggcggcgcggagcaagga 245
>gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 3', mRNA sequence
Length = 414
Score = 131 bits (66), Expect = 3e-029
Identities = 144/170 (84%)
Strand = Plus / Minus
Query: 129 gagatcctaatggggcttctcctgttcacgcccattgctttccttgcctggttcccgttc 188
|||||| | |||||||| || || ||||| || || || ||||| || ||||||||||||
Sbjct: 413 gagatcatcatggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccgttc 354
Query: 189 gtgtccgagttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatc 248
||||| ||||||||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 353 gtgtctgagttccagactcggatgctcttcaaccaggccttcagccgtggtctgcagatc 294
Query: 249 tcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaagga 298
|| | |||||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 293 tcgaggatcctgggtgggcacaagaaggaccgggcggcgcggagcaagga 244
>gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 5', mRNA sequence
Length = 483
Score = 129 bits (65), Expect = 1e-028
Identities = 137/161 (85%)
Strand = Plus / Plus
Query: 138 atggggcttctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgag 197
|||||||| || || ||||| || || || ||||| || ||||||||||||||||| |||
Sbjct: 22 atggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgag 81
Query: 198 ttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatc 257
|||||||| ||||||| |||||||||||||||||| | |||||||||||||| | |||
Sbjct: 82 ttccagactcggatgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatc 141
Query: 258 ctgggaggacacaagaaagaccgagggacgcggagcaagga 298
||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 142 ctgggtgggcacaagaaggaccgggcggcgcggagcaagga 182
>gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 5', mRNA sequence
Length = 471
Score = 129 bits (65), Expect = 1e-028
Identities = 137/161 (85%)
Strand = Plus / Plus
Query: 138 atggggcttctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgag 197
|||||||| || || ||||| || || || ||||| || ||||||||||||||||| |||
Sbjct: 10 atggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgag 69
Query: 198 ttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatc 257
|||||||| ||||||| |||||||||||||||||| | |||||||||||||| | |||
Sbjct: 70 ttccagactcggatgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatc 129
Query: 258 ctgggaggacacaagaaagaccgagggacgcggagcaagga 298
||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 130 ctgggtgggcacaagaaggaccgggcggcgcggagcaagga 170
>gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 5', mRNA sequence
Length = 474
Score = 129 bits (65), Expect = 1e-028
Identities = 137/161 (85%)
Strand = Plus / Plus
Query: 138 atggggcttctcctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgag 197
|||||||| || || ||||| || || || ||||| || ||||||||||||||||| |||
Sbjct: 13 atggggctgctgctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgag 72
Query: 198 ttccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgtatc 257
|||||||| ||||||| |||||||||||||||||| | |||||||||||||| | |||
Sbjct: 73 ttccagactcggatgctcttcaaccaggccttcagccgtggtctgcagatctcgaggatc 132
Query: 258 ctgggaggacacaagaaagaccgagggacgcggagcaagga 298
||||| || |||||||| ||||| | | |||||||||||||
Sbjct: 133 ctgggtgggcacaagaaggaccgggcggcgcggagcaagga 173
>gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 5', mRNA sequence
Length = 447
Score = 119 bits (60), Expect = 1e-025
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||| | ||||||||||| ||||||| ||||||||||||
Sbjct: 25 ttcctggcgtggttcccgttcgtgnctgagttccagactcggatgctcttcaaccaggcc 84
Query: 228 ttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaagaccgagggacg 287
|||||| | |||||||||||||| | |||||||| || |||||||| ||||| | | ||
Sbjct: 85 ttcagccgtggtctgcagatctcgaggatcctgggtgggcacaagaaggaccgggcggcg 144
Query: 288 cggagcaagga 298
|||||||||||
Sbjct: 145 cggagcaagga 155
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 119 bits (60), Expect = 1e-025
Identities = 135/160 (84%)
Strand = Plus / Plus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||| ||||| | |||||||| ||
Sbjct: 307 gggctgtgggggtcgatccgggctctagctcgtgggtaccagatcatcatggggctgctg 366
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct: 367 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcgg 426
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagatct 249
||||| |||||||| ||||||||| | |||||||||||||
Sbjct: 427 atgctcttcaaccaagccttcagccgtggtctgcagatct 466
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 229 tgcatccttgccttcatgccaacgggatggggcctgctcct 269
>gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 3', mRNA sequence
Length = 405
Score = 117 bits (59), Expect = 4e-025
Identities = 106/122 (86%)
Strand = Plus / Minus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
Sbjct: 389 tggttcccgttcgtgtctnagttccagactcggatgctcttcaaccaggccttcagccgt 330
Query: 237 ggtctgcagatctcccgtatcctgggaggacacaagaaagaccgagggacgcggagcaag 296
|||||||||||||| | |||||||| || |||||||| ||||| | | |||||||||||
Sbjct: 329 ggtctgcagatctcgaggatcctgggtgggcacaagaaggaccgggcggcgcggagcaag 270
Query: 297 ga 298
||
Sbjct: 269 ga 268
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 109 bits (55), Expect = 1e-022
Identities = 133/158 (84%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatcctaatggggcttctc 149
|||||||||||||||||| |||||| || || || ||||||||| | |||||||| ||
Sbjct: 498 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatcatcatggggctgctg 557
Query: 150 ctgttcacgcccattgctttccttgcctggttcccgttcgtgtccgagttccagaccagg 209
|| ||||| || || || ||||| || ||||||||||||||||| ||||||||||| |
Sbjct: 558 ctcttcaccccgatcgcgttcctggcgtggttcccgttcgtgtctgagttccagactcng 617
Query: 210 atgctgttcaaccaggccttcagcagaggtctgcagat 247
||||| || ||||||||||||||| | |||||||||||
Sbjct: 618 atgctctt-aaccaggccttcagccgtggtctgcagat 654
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 420 tgcatccttgccttcatgccaacgggatggggcctgctcct 460
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 89.7 bits (45), Expect = 1e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 103 tggttccccttcgtctccgagttccagacgcggatgctgttcaaccaggcgttcagtaga 162
Query: 237 ggtctgcagatctcccg 253
|| |||||||| |||||
Sbjct: 163 gggctgcagatatcccg 179
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 89.7 bits (45), Expect = 1e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 210 tggttccccttcgtctccgagttccagacgcggatgctgttcaaccaggcgttcagtaga 269
Query: 237 ggtctgcagatctcccg 253
|| |||||||| |||||
Sbjct: 270 gggctgcagatatcccg 286
>gb|BM101006.1|BM101006 EBpi01_SQ002_J05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_J05 5', mRNA sequence
Length = 342
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 213 ctgttcaaccaggccttcagcagaggtctgcagatctccc 252
||||||||||||||||||||| | |||||| |||||||||
Sbjct: 16 ctgttcaaccaggccttcagccgtggtctggagatctccc 55
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 213 ctgttcaaccaggccttcagcagaggtctgcagatctccc 252
||||||||||||||||||||| | |||||| |||||||||
Sbjct: 291 ctgttcaaccaggccttcagccgtggtctggagatctccc 330
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 213 ctgttcaaccaggccttcagcagaggtctgcagatctccc 252
||||||||||||||||||||| | |||||| |||||||||
Sbjct: 354 ctgttcaaccaggccttcagccgtggtctggagatctccc 315
>gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02df07, mRNA sequence
Length = 676
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 213 ctgttcaaccaggccttcagcagaggtctgcagatctccc 252
||||||||||||||||||||| | |||||| |||||||||
Sbjct: 447 ctgttcaaccaggccttcagccgtggtctggagatctccc 408
>gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022K21f, mRNA sequence
Length = 507
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 413 tgcatccttgccttcatgccaacgggatggggcctgctcct 453
>gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 5', mRNA sequence
Length = 495
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 368 tgcatccttgccttcatgccaacgggatggggcctgctcct 408
Score = 42.1 bits (21), Expect = 0.021
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 90 gggctgtgggggtcgatcaaggctcttgcccggggctacgagatc 134
|||||||||||||||||| |||||| || || || |||||||||
Sbjct: 446 gggctgtgggggtcgatccgggctctagctcgtgggtacgagatc 490
>gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 5', mRNA sequence
Length = 413
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcct 52
|||||||||||||||||||| || |||||||| |||||||
Sbjct: 339 tgcatccttgccttcatgccaacgggatggggcctgctcct 379
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 376 ctgttcaaccaggctttcagcagaggt 350
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 289 ctgttcaaccaggctttcagcagaggt 263
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 371 ctgttcaaccaggctttcagcagaggt 397
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 593 ctgttcaaccaggctttcagcagaggt 619
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 147 ctgttcaaccaggctttcagcagaggt 173
>gb|BJ474560.1|BJ474560 BJ474560 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14l04 3', mRNA sequence
Length = 478
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 352 ctgttcaaccaggctttcagcagaggt 326
>gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M03
3-PRIME, mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 380 ctgttcaaccaggctttcagcagaggt 354
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 213 ctgttcaaccaggccttcagcagaggt 239
|||||||||||||| ||||||||||||
Sbjct: 5763 ctgttcaaccaggctttcagcagaggt 5789
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 15 atccttgccttcatgcccactggatggggtttgctcct 52
||||||||||||||||| || |||||||| |||||||
Sbjct: 541 atccttgccttcatgccaacgggatggggcctgctcct 578
>gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cd06, mRNA sequence
Length = 639
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 214 tgttcaaccaggccttcagcagaggt 239
||||||||||||| ||||||||||||
Sbjct: 413 tgttcaaccaggctttcagcagaggt 388
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,277
Number of Sequences: 312970
Number of extensions: 45277
Number of successful extensions: 11392
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11316
Number of HSP's gapped (non-prelim): 75
length of query: 620
length of database: 175,134,539
effective HSP length: 19
effective length of query: 601
effective length of database: 169,188,109
effective search space: 101682053509
effective search space used: 101682053509
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)