BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE060122.3|BE060122 HVSMEg0011I14f Hordeum vulgare pre-a... 319 7e-086
gb|BQ458965.1|BQ458965 HA02L05r HA Hordeum vulgare subsp. v... 319 7e-086
gb|BQ466675.1|BQ466675 HS01D19T HS Hordeum vulgare subsp. v... 319 7e-086
gb|BQ468369.1|BQ468369 HM01B04T HM Hordeum vulgare subsp. v... 319 7e-086
gb|BQ660913.1|BQ660913 HM01B04w HM Hordeum vulgare subsp. v... 319 7e-086
gb|BM375177.2|BM375177 EBem06_SQ002_J08_R embryo, 21 DPA, n... 319 7e-086
gb|BM375526.2|BM375526 EBem06_SQ003_J18_R embryo, 21 DPA, n... 319 7e-086
gb|BM375548.2|BM375548 EBem06_SQ003_K20_R embryo, 21 DPA, n... 319 7e-086
gb|BI780853.2|BI780853 EBma05_SQ001_D09_R maternal, 12 DPA,... 319 7e-086
gb|BI777536.2|BI777536 EBro04_SQ001_I10_R root, 3 week, sal... 319 7e-086
gb|BQ754602.1|BQ754602 EBed01_SQ003_E13_R endosperm, 6 DPA,... 319 7e-086
gb|BQ762318.1|BQ762318 EBro01_SQ005_O12_R root, 3 week, hyd... 319 7e-086
gb|BQ762406.1|BQ762406 EBro01_SQ005_C19_R root, 3 week, hyd... 319 7e-086
gb|BQ767317.1|BQ767317 EBro08_SQ008_F17_R root, 3 week, dro... 319 7e-086
gb|BQ767711.1|BQ767711 EBro08_SQ009_K17_R root, 3 week, dro... 319 7e-086
gb|BU977257.1|BU977257 HA11C05r HA Hordeum vulgare subsp. v... 319 7e-086
gb|BU977258.1|BU977258 HA11C05u HA Hordeum vulgare subsp. v... 319 7e-086
gb|BU978564.1|BU978564 HA13J16r HA Hordeum vulgare subsp. v... 319 7e-086
gb|BU979394.1|BU979394 HA16A06r HA Hordeum vulgare subsp. v... 319 7e-086
gb|BU980221.1|BU980221 HA20A14r HA Hordeum vulgare subsp. v... 319 7e-086
gb|BU981687.1|BU981687 HA24F12r HA Hordeum vulgare subsp. v... 319 7e-086
gb|BU999552.1|BU999552 HI14N17r HI Hordeum vulgare subsp. v... 319 7e-086
gb|CA000594.1|CA000594 HS07P17u HS Hordeum vulgare subsp. v... 319 7e-086
gb|CA020290.1|CA020290 HV14N24r HV Hordeum vulgare subsp. v... 319 7e-086
gb|CA020311.1|CA020311 HV14O22r HV Hordeum vulgare subsp. v... 319 7e-086
gb|CA020339.1|CA020339 HZ36A05r HZ Hordeum vulgare subsp. v... 319 7e-086
gb|CA029789.1|CA029789 HX05D14r HX Hordeum vulgare subsp. v... 319 7e-086
gb|CA032599.1|CA032599 HX13J18r HX Hordeum vulgare subsp. v... 319 7e-086
gb|CK122306.1|CK122306 BES1824102n03 BES1824 Hordeum vulgar... 319 7e-086
gb|CK122866.1|CK122866 BES1824106g17 BES1824 Hordeum vulgar... 319 7e-086
gb|CK125078.1|CK125078 BES1824106i18 BES1824 Hordeum vulgar... 319 7e-086
gb|BM374783.1|BM374783 EBma05_SQ002_M23_R maternal, 12 DPA,... 313 4e-084
gb|BE455459.2|BE455459 HVSMEg0017E05f Hordeum vulgare pre-a... 311 2e-083
gb|BJ458832.1|BJ458832 BJ458832 K. Sato unpublished cDNA li... 311 2e-083
gb|BM368233.2|BM368233 EBed01_SQ002_I21_R endosperm, 6 DPA,... 311 2e-083
gb|BM376767.2|BM376767 EBem05_SQ003_C21_R embryo, 14 DPA, n... 311 2e-083
gb|BM376287.2|BM376287 EBma01_SQ002_O17_R maternal, 4 DPA, ... 311 2e-083
gb|BQ768250.1|BQ768250 EBro08_SQ011_M04_R root, 3 week, dro... 311 2e-083
gb|CV057924.1|CV057924 BNEL32d3 Barley EST endosperm librar... 311 2e-083
gb|AJ462580.1|AJ462580 AJ462580 S00002 Hordeum vulgare subs... 309 7e-083
gb|BJ451335.1|BJ451335 BJ451335 K. Sato unpublished cDNA li... 305 1e-081
gb|BG299764.1|BG299764 HVSMEa0021L12f Hordeum vulgare seedl... 303 4e-081
gb|BM376400.2|BM376400 EBem05_SQ002_B24_R embryo, 14 DPA, n... 303 4e-081
gb|BM369481.2|BM369481 EBem07_SQ003_L10_R embryo, 28 DPA, n... 303 4e-081
gb|BQ764996.1|BQ764996 EBca01_SQ005_A17_R carpel, pre-anthe... 303 4e-081
gb|BQ765983.1|BQ765983 EBro03_SQ008_P14_R root, 3 week, wat... 303 4e-081
gb|CV055835.1|CV055835 BNEL124a11 Barley EST endosperm libr... 303 4e-081
gb|CV056561.1|CV056561 BNEL19B5 Barley EST endosperm librar... 303 4e-081
gb|CV058555.1|CV058555 BNEL39c5 Barley EST endosperm librar... 303 4e-081
gb|CV062199.1|CV062199 BNEL77d5 Barley EST endosperm librar... 303 4e-081
gb|CV064007.1|CV064007 BNEL96c9 Barley EST endosperm librar... 303 4e-081
gb|CK124393.1|CK124393 BES1824108k21 BES1824 Hordeum vulgar... 301 2e-080
gb|BU983925.1|BU983925 HA31H14r HA Hordeum vulgare subsp. v... 297 3e-079
gb|BM369011.2|BM369011 EBem07_SQ002_E16_R embryo, 28 DPA, n... 295 1e-078
gb|BM373820.2|BM373820 EBma03_SQ002_M23_R maternal, 8 DPA, ... 291 2e-077
gb|BE455633.3|BE455633 HVSMEg0018H04f Hordeum vulgare pre-a... 287 2e-076
gb|BM444594.1|BM444594 EBem09_SQ005_N09_R embryo, 1 Day ger... 287 2e-076
gb|BG414983.2|BG414983 HVSMEk0004I15f Hordeum vulgare testa... 283 4e-075
gb|BE421664.1|BE421664 HWM012cE.08r ITEC HWM Barley Leaf Li... 280 6e-074
gb|AL507068.1|AL507068 AL507068 Hordeum vulgare Barke devel... 280 6e-074
gb|AL507358.1|AL507358 AL507358 Hordeum vulgare Barke devel... 280 6e-074
gb|AL507378.1|AL507378 AL507378 Hordeum vulgare Barke devel... 280 6e-074
gb|AL509573.1|AL509573 AL509573 Hordeum vulgare Barke devel... 280 6e-074
gb|BF621179.3|BF621179 HVSMEa0004N16f Hordeum vulgare seedl... 280 6e-074
gb|BF622675.3|BF622675 HVSMEa0007M07f Hordeum vulgare seedl... 280 6e-074
gb|BF631514.3|BF631514 HVSMEb0016D21f Hordeum vulgare seedl... 280 6e-074
gb|BF258722.3|BF258722 HVSMEf0016I03f Hordeum vulgare seedl... 280 6e-074
gb|AJ462579.1|AJ462579 AJ462579 S00002 Hordeum vulgare subs... 280 6e-074
gb|AJ462900.1|AJ462900 AJ462900 S00002 Hordeum vulgare subs... 280 6e-074
gb|BQ460224.1|BQ460224 HA06N21r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BQ460584.1|BQ460584 HA06I06r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BQ460610.1|BQ460610 HA06H09r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BQ462777.1|BQ462777 HI01P15T HI Hordeum vulgare subsp. v... 280 6e-074
gb|BQ463312.1|BQ463312 HI04M02r HI Hordeum vulgare subsp. v... 280 6e-074
gb|BQ656372.1|BQ656372 HA04L08u HA Hordeum vulgare subsp. v... 280 6e-074
gb|BQ660334.1|BQ660334 HI01P15w HI Hordeum vulgare subsp. v... 280 6e-074
gb|BM376532.2|BM376532 EBem05_SQ002_H21_R embryo, 14 DPA, n... 280 6e-074
gb|BI779905.2|BI779905 EBem07_SQ001_I19_R embryo, 28 DPA, n... 280 6e-074
gb|BM369523.2|BM369523 EBem07_SQ003_N10_R embryo, 28 DPA, n... 280 6e-074
gb|BM099285.2|BM099285 EBes01_SQ002_M16_R embryo sac, 4-6 D... 280 6e-074
gb|BM370879.2|BM370879 EBro04_SQ002_K09_R root, 3 week, sal... 280 6e-074
gb|BI777992.2|BI777992 EBro07_SQ001_L07_R root, 3 week, red... 280 6e-074
gb|BM370627.2|BM370627 EBro08_SQ004_M15_R root, 3 week, dro... 280 6e-074
gb|BQ754654.1|BQ754654 EBed01_SQ003_G21_R endosperm, 6 DPA,... 280 6e-074
gb|BQ766505.1|BQ766505 EBro08_SQ006_D10_R root, 3 week, dro... 280 6e-074
gb|BQ766923.1|BQ766923 EBro08_SQ007_B15_R root, 3 week, dro... 280 6e-074
gb|BQ767745.1|BQ767745 EBro08_SQ009_A21 _R root, 3 week, dr... 280 6e-074
gb|BU978865.1|BU978865 HA14H22r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BU979280.1|BU979280 HA15K16r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BU980819.1|BU980819 HA21M17r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BU981873.1|BU981873 HA24O03r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BU984048.1|BU984048 HA31N10r HA Hordeum vulgare subsp. v... 280 6e-074
gb|BU987345.1|BU987345 HF14I03r HF Hordeum vulgare subsp. v... 280 6e-074
gb|BU996242.1|BU996242 HM12P22r HM Hordeum vulgare subsp. v... 280 6e-074
gb|CA021715.1|CA021715 HZ40O08r HZ Hordeum vulgare subsp. v... 280 6e-074
gb|CA022524.1|CA022524 HZ43H19r HZ Hordeum vulgare subsp. v... 280 6e-074
gb|CA026651.1|CA026651 HZ56I16r HZ Hordeum vulgare subsp. v... 280 6e-074
gb|CB874371.1|CB874371 HX05B05w HX Hordeum vulgare subsp. v... 280 6e-074
gb|CK123785.1|CK123785 BES1824105f16 BES1824 Hordeum vulgar... 280 6e-074
gb|CK125259.1|CK125259 BES1824107i08 BES1824 Hordeum vulgar... 280 6e-074
gb|AJ462899.1|AJ462899 AJ462899 S00002 Hordeum vulgare subs... 278 2e-073
gb|BM097523.2|BM097523 EBem04_SQ001_M02_R embryo, 12 DPA, n... 274 4e-072
gb|BM369027.2|BM369027 EBem07_SQ002_F13_R embryo, 28 DPA, n... 274 4e-072
gb|BM369146.2|BM369146 EBem07_SQ002_L08_R embryo, 28 DPA, n... 274 4e-072
gb|BM098528.2|BM098528 EBem08_SQ003_F04_R embryo, 40 DPA, n... 274 4e-072
gb|BM097118.2|BM097118 EBpi07_SQ002_H07_R pistil, 12 DPA, n... 274 4e-072
gb|CA013697.1|CA013697 HT09D19r HT Hordeum vulgare subsp. v... 274 4e-072
gb|BG416022.2|BG416022 HVSMEk0009H11f Hordeum vulgare testa... 272 1e-071
gb|AJ462897.1|AJ462897 AJ462897 S00002 Hordeum vulgare subs... 272 1e-071
gb|BM099027.2|BM099027 EBpi05_SQ002_L20_R pistil, 8 DPA, no... 272 1e-071
gb|CA032772.1|CA032772 HX14C16r HX Hordeum vulgare subsp. v... 272 1e-071
gb|CK124303.1|CK124303 BES1824108e24 BES1824 Hordeum vulgar... 272 1e-071
gb|BM444266.1|BM444266 EBem09_SQ004_K09_R embryo, 1 Day ger... 266 9e-070
gb|BM444813.1|BM444813 EBem09_SQ006_I23_R embryo, 1 Day ger... 266 9e-070
gb|BU983870.1|BU983870 HA31E18r HA Hordeum vulgare subsp. v... 266 9e-070
gb|BE601697.3|BE601697 HVSMEh0099D17f Hordeum vulgare 5-45 ... 264 4e-069
gb|BM374892.1|BM374892 EBma05_SQ003_G18_R maternal, 12 DPA,... 264 4e-069
gb|AJ462581.1|AJ462581 AJ462581 S00002 Hordeum vulgare subs... 264 4e-069
gb|BM373254.2|BM373254 EBma04_SQ003_L18_R maternal, 10 DPA,... 264 4e-069
gb|BI777569.2|BI777569 EBro04_SQ001_J23_R root, 3 week, sal... 264 4e-069
gb|AL510563.1|AL510563 AL510563 Hordeum vulgare Barke devel... 260 6e-068
gb|BF259864.3|BF259864 HVSMEf0020H15f Hordeum vulgare seedl... 260 6e-068
gb|BU978372.1|BU978372 HA13A14r HA Hordeum vulgare subsp. v... 260 6e-068
gb|BQ662407.1|BQ662407 HS02D19u HS Hordeum vulgare subsp. v... 258 2e-067
gb|BU973402.1|BU973402 HB24N01r BC Hordeum vulgare subsp. v... 258 2e-067
gb|CV060964.1|CV060964 BNEL63d2 Barley EST endosperm librar... 256 9e-067
gb|BM098831.2|BM098831 EBpi05_SQ002_D01_R pistil, 8 DPA, no... 254 3e-066
gb|BU999650.1|BU999650 HI15D15r HI Hordeum vulgare subsp. v... 254 3e-066
gb|BQ756374.1|BQ756374 EBem08_SQ001_L15_R embryo, 40 DPA, n... 252 1e-065
gb|AJ462896.1|AJ462896 AJ462896 S00002 Hordeum vulgare subs... 250 5e-065
gb|AJ434287.1|AJ434287 AJ434287 S00002 Hordeum vulgare subs... 248 2e-064
gb|BM441512.2|BM441512 EBma05_SQ004_K02_R maternal, 12 DPA,... 242 1e-062
gb|CA013877.1|CA013877 HT09L23r HT Hordeum vulgare subsp. v... 242 1e-062
gb|CA010543.1|CA010543 HT09L23u HT Hordeum vulgare subsp. v... 240 5e-062
gb|BU966690.1|BU966690 HB02B01r BC Hordeum vulgare subsp. v... 236 8e-061
gb|CA017559.1|CA017559 HV05I23r HV Hordeum vulgare subsp. v... 236 8e-061
gb|CA017812.1|CA017812 HV06F15r HV Hordeum vulgare subsp. v... 236 8e-061
gb|BQ756355.1|BQ756355 EBem08_SQ001_H10_R embryo, 40 DPA, n... 230 5e-059
gb|CA000928.1|CA000928 HS06I11u HS Hordeum vulgare subsp. v... 230 5e-059
gb|BM368520.2|BM368520 EBem08_SQ002_J16_R embryo, 40 DPA, n... 228 2e-058
gb|CK123591.1|CK123591 BES1824104j01 BES1824 Hordeum vulgar... 224 3e-057
gb|BU982009.1|BU982009 HA25E05r HA Hordeum vulgare subsp. v... 222 1e-056
gb|BU981119.1|BU981119 HA22L04r HA Hordeum vulgare subsp. v... 220 5e-056
gb|CA029735.1|CA029735 HX05B05r HX Hordeum vulgare subsp. v... 220 5e-056
gb|CV053896.1|CV053896 BNEL104d4 Barley EST endosperm libra... 216 8e-055
gb|BJ466611.1|BJ466611 BJ466611 K. Sato unpublished cDNA li... 210 5e-053
gb|AJ462898.1|AJ462898 AJ462898 S00002 Hordeum vulgare subs... 208 2e-052
gb|BU974760.1|BU974760 HB29A08r BC Hordeum vulgare subsp. v... 208 2e-052
gb|BQ754127.1|BQ754127 EBca01_SQ002_O18_R carpel, pre-anthe... 204 3e-051
gb|BQ656643.1|BQ656643 HA02L05u HA Hordeum vulgare subsp. v... 186 7e-046
gb|AJ435946.1|AJ435946 AJ435946 S00002 Hordeum vulgare subs... 182 1e-044
gb|BM097628.2|BM097628 EBem04_SQ002_E04_R embryo, 12 DPA, n... 174 3e-042
gb|BU983118.1|BU983118 HA28J20r HA Hordeum vulgare subsp. v... 172 1e-041
gb|BU994143.1|BU994143 HM05O08r HM Hordeum vulgare subsp. v... 165 2e-039
gb|BM376542.1|BM376542 EBem05_SQ002_I10_R embryo, 14 DPA, n... 157 6e-037
gb|BM444026.2|BM444026 EBem09_SQ002_N06_R embryo, 1 Day ger... 155 2e-036
gb|BM375093.2|BM375093 EBem06_SQ002_F05_R embryo, 21 DPA, n... 149 1e-034
gb|CA010622.1|CA010622 HT09D19u HT Hordeum vulgare subsp. v... 137 6e-031
gb|BJ463665.1|BJ463665 BJ463665 K. Sato unpublished cDNA li... 131 3e-029
gb|BJ466534.1|BJ466534 BJ466534 K. Sato unpublished cDNA li... 101 3e-020
gb|CD240723.1|CD240723 LP10331 Lemma/palea-enriched cDNA li... 86 2e-015
gb|CD240748.1|CD240748 LP20312 Lemma/palea-enriched cDNA li... 86 2e-015
gb|BM100879.2|BM100879 EBpi01_SQ002_E05_R pistil, 1 DPA, no... 68 4e-010
gb|BM370524.1|BM370524 EBro08_SQ004_H19_R root, 3 week, dro... 60 1e-007
gb|CA023102.1|CA023102 HZ45D22r HZ Hordeum vulgare subsp. v... 58 4e-007
gb|CA027081.1|CA027081 HZ57N09r HZ Hordeum vulgare subsp. v... 58 4e-007
gb|AJ435045.1|AJ435045 AJ435045 S00002 Hordeum vulgare subs... 50 1e-004
gb|BU980138.1|BU980138 HA18L16r HA Hordeum vulgare subsp. v... 50 1e-004
gb|AV834268.1|AV834268 AV834268 K. Sato unpublished cDNA li... 46 0.002
gb|BU979853.1|BU979853 HA17I17r HA Hordeum vulgare subsp. v... 46 0.002
gb|BM374279.1|BM374279 EBpi03_SQ003_C20_R pistil, 4 DPA, no... 44 0.006
gb|CB880807.1|CB880807 HM07O08w HM Hordeum vulgare subsp. v... 42 0.025
gb|BG343351.2|BG343351 HVSMEg0005I05f Hordeum vulgare pre-a... 38 0.38
gb|BG344953.2|BG344953 HVSMEg0018A12f Hordeum vulgare pre-a... 38 0.38
gb|BG369737.2|BG369737 HVSMEi0025M05f Hordeum vulgare 20 DA... 38 0.38
gb|BM817004.1|BM817004 HB108A09_SK.ab1 HB Hordeum vulgare s... 38 0.38
gb|BM370848.2|BM370848 EBro04_SQ002_I06_R root, 3 week, sal... 38 0.38
gb|CB883603.1|CB883603 HQ02L23w HQ Hordeum vulgare subsp. v... 38 0.38
gb|CV056869.1|CV056869 BNEL21e10 Barley EST endosperm libra... 38 0.38
gb|CV057662.1|CV057662 BNEL2D12 Barley EST endosperm librar... 38 0.38
gb|CV058393.1|CV058393 BNEL37e8 Barley EST endosperm librar... 38 0.38
gb|CV058698.1|CV058698 BNEL3H11 Barley EST endosperm librar... 38 0.38
gb|CV059186.1|CV059186 BNEL45d10 Barley EST endosperm libra... 38 0.38
gb|CV063791.1|CV063791 BNEL93c10 Barley EST endosperm libra... 38 0.38
>gb|BE060122.3|BE060122 HVSMEg0011I14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011I14f, mRNA sequence
Length = 596
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 64 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 123
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 124 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 183
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 184 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 243
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 244 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 303
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 304 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 363
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 364 agatcttcaccagggccacaaacac 388
>gb|BQ458965.1|BQ458965 HA02L05r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L05
5-PRIME, mRNA sequence
Length = 556
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 56 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 115
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 116 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 175
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 176 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 235
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 236 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 295
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 296 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 355
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 356 agatcttcaccagggccacaaacac 380
>gb|BQ466675.1|BQ466675 HS01D19T HS Hordeum vulgare subsp. vulgare cDNA clone HS01D19
5-PRIME, mRNA sequence
Length = 489
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 36 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 95
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 96 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 155
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 156 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 215
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 216 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 275
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 276 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 335
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 336 agatcttcaccagggccacaaacac 360
>gb|BQ468369.1|BQ468369 HM01B04T HM Hordeum vulgare subsp. vulgare cDNA clone HM01B04
5-PRIME, mRNA sequence
Length = 580
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 56 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 115
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 116 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 175
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 176 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 235
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 236 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 295
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 296 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 355
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 356 agatcttcaccagggccacaaacac 380
>gb|BQ660913.1|BQ660913 HM01B04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01B04
3-PRIME, mRNA sequence
Length = 562
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Minus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 526 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 467
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 466 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 407
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 406 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 347
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 346 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 287
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 286 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 227
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 226 agatcttcaccagggccacaaacac 202
>gb|BM375177.2|BM375177 EBem06_SQ002_J08_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_J08 5', mRNA sequence
Length = 513
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 67 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 126
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 127 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 186
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 187 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 246
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 247 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 306
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 307 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 366
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 367 agatcttcaccagggccacaaacac 391
>gb|BM375526.2|BM375526 EBem06_SQ003_J18_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_J18 5', mRNA sequence
Length = 560
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 59 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 118
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 119 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 178
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 179 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 238
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 239 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 298
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 299 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 358
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 359 agatcttcaccagggccacaaacac 383
>gb|BM375548.2|BM375548 EBem06_SQ003_K20_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_K20 5', mRNA sequence
Length = 529
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 58 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 117
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 118 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 177
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 178 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 237
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 238 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 297
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 298 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 357
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 358 agatcttcaccagggccacaaacac 382
>gb|BI780853.2|BI780853 EBma05_SQ001_D09_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_D09 5', mRNA sequence
Length = 550
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 52 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 111
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 112 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 171
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 172 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 231
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 232 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 291
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 292 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 351
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 352 agatcttcaccagggccacaaacac 376
>gb|BI777536.2|BI777536 EBro04_SQ001_I10_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_I10 5', mRNA sequence
Length = 521
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 61 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 120
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 121 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 180
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 181 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 240
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 241 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 300
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 301 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 360
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 361 agatcttcaccagggccacaaacac 385
>gb|BQ754602.1|BQ754602 EBed01_SQ003_E13_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_E13 5', mRNA sequence
Length = 514
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 52 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 111
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 112 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 171
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 172 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 231
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 232 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 291
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 292 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 351
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 352 agatcttcaccagggccacaaacac 376
>gb|BQ762318.1|BQ762318 EBro01_SQ005_O12_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_O12 5', mRNA sequence
Length = 514
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 49 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 108
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 109 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 168
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 169 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 228
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 229 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 288
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 289 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 348
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 349 agatcttcaccagggccacaaacac 373
>gb|BQ762406.1|BQ762406 EBro01_SQ005_C19_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_C19 5', mRNA sequence
Length = 549
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 48 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 107
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 108 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 167
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 168 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 227
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 228 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 287
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 288 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 347
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 348 agatcttcaccagggccacaaacac 372
>gb|BQ767317.1|BQ767317 EBro08_SQ008_F17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_F17 5', mRNA sequence
Length = 568
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 60 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 119
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 120 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 179
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 180 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 239
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 240 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 299
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 300 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 359
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 360 agatcttcaccagggccacaaacac 384
>gb|BQ767711.1|BQ767711 EBro08_SQ009_K17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_K17 5', mRNA sequence
Length = 584
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 72 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 131
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 132 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 191
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 192 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 251
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 252 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 311
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 312 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 371
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 372 agatcttcaccagggccacaaacac 396
>gb|BU977257.1|BU977257 HA11C05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11C05
5-PRIME, mRNA sequence
Length = 568
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 71 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 130
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 131 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 190
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 191 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 250
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 251 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 310
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 311 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 370
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 371 agatcttcaccagggccacaaacac 395
>gb|BU977258.1|BU977258 HA11C05u HA Hordeum vulgare subsp. vulgare cDNA clone HA11C05
3-PRIME, mRNA sequence
Length = 568
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Minus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 498 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 439
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 438 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 379
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 378 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 319
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 318 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 259
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 258 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 199
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 198 agatcttcaccagggccacaaacac 174
>gb|BU978564.1|BU978564 HA13J16r HA Hordeum vulgare subsp. vulgare cDNA clone HA13J16
5-PRIME, mRNA sequence
Length = 559
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 67 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 126
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 127 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 186
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 187 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 246
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 247 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 306
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 307 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 366
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 367 agatcttcaccagggccacaaacac 391
>gb|BU979394.1|BU979394 HA16A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA16A06
5-PRIME, mRNA sequence
Length = 525
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 64 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 123
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 124 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 183
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 184 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 243
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 244 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 303
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 304 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 363
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 364 agatcttcaccagggccacaaacac 388
>gb|BU980221.1|BU980221 HA20A14r HA Hordeum vulgare subsp. vulgare cDNA clone HA20A14
5-PRIME, mRNA sequence
Length = 431
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 77 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 136
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 137 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 196
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 197 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 256
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 257 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 316
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 317 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 376
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 377 agatcttcaccagggccacaaacac 401
>gb|BU981687.1|BU981687 HA24F12r HA Hordeum vulgare subsp. vulgare cDNA clone HA24F12
5-PRIME, mRNA sequence
Length = 542
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 72 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 131
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 132 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 191
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 192 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 251
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 252 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 311
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 312 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 371
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 372 agatcttcaccagggccacaaacac 396
>gb|BU999552.1|BU999552 HI14N17r HI Hordeum vulgare subsp. vulgare cDNA clone HI14N17
5-PRIME, mRNA sequence
Length = 571
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 71 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 130
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 131 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 190
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 191 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 250
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 251 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 310
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 311 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 370
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 371 agatcttcaccagggccacaaacac 395
>gb|CA000594.1|CA000594 HS07P17u HS Hordeum vulgare subsp. vulgare cDNA clone HS07P17
3-PRIME, mRNA sequence
Length = 542
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Minus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 498 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 439
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 438 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 379
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 378 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 319
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 318 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 259
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 258 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 199
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 198 agatcttcaccagggccacaaacac 174
>gb|CA020290.1|CA020290 HV14N24r HV Hordeum vulgare subsp. vulgare cDNA clone HV14N24
5-PRIME, mRNA sequence
Length = 533
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 72 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 131
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 132 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 191
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 192 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 251
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 252 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 311
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 312 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 371
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 372 agatcttcaccagggccacaaacac 396
>gb|CA020311.1|CA020311 HV14O22r HV Hordeum vulgare subsp. vulgare cDNA clone HV14O22
5-PRIME, mRNA sequence
Length = 546
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 56 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 115
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 116 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 175
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 176 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 235
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 236 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 295
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 296 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 355
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 356 agatcttcaccagggccacaaacac 380
>gb|CA020339.1|CA020339 HZ36A05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36A05
5-PRIME, mRNA sequence
Length = 517
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 58 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 117
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 118 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 177
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 178 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 237
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 238 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 297
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 298 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 357
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 358 agatcttcaccagggccacaaacac 382
>gb|CA029789.1|CA029789 HX05D14r HX Hordeum vulgare subsp. vulgare cDNA clone HX05D14
5-PRIME, mRNA sequence
Length = 471
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Minus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 441 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 382
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 381 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 322
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 321 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 262
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 261 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 202
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 201 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 142
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 141 agatcttcaccagggccacaaacac 117
>gb|CA032599.1|CA032599 HX13J18r HX Hordeum vulgare subsp. vulgare cDNA clone HX13J18
5-PRIME, mRNA sequence
Length = 631
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 71 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 130
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 131 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 190
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 191 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 250
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 251 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 310
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 311 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 370
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 371 agatcttcaccagggccacaaacac 395
>gb|CK122306.1|CK122306 BES1824102n03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N032 5-PRIME, mRNA sequence
Length = 661
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 61 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 120
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 121 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 180
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 181 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 240
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 241 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 300
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 301 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 360
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 361 agatcttcaccagggccacaaacac 385
>gb|CK122866.1|CK122866 BES1824106g17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G176 5-PRIME, mRNA sequence
Length = 557
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 35 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 94
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 95 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 154
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 155 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 214
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 215 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 274
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 275 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 334
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 335 agatcttcaccagggccacaaacac 359
>gb|CK125078.1|CK125078 BES1824106i18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I186 5-PRIME, mRNA sequence
Length = 575
Score = 319 bits (161), Expect = 7e-086
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 61 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 120
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 121 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 180
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 181 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 240
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 241 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 300
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 301 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 360
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 361 agatcttcaccagggccacaaacac 385
>gb|BM374783.1|BM374783 EBma05_SQ002_M23_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_M23 5', mRNA sequence
Length = 503
Score = 313 bits (158), Expect = 4e-084
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 58 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 117
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 118 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 177
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 178 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 237
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 238 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 297
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 298 ctatcaaggacctgatggagagggggctcatcangatggtgtcaatccactccagccagc 357
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 358 agatcttcaccagggccacaaacac 382
>gb|BE455459.2|BE455459 HVSMEg0017E05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017E05f, mRNA sequence
Length = 593
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||| ||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 73 ccatggcgccgaacaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 132
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 133 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 192
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 193 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 252
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 253 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 312
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 313 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 372
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 373 agatcttcaccagggccacaaacac 397
>gb|BJ458832.1|BJ458832 BJ458832 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33j18 3', mRNA sequence
Length = 530
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Minus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 498 ccatggcgccgaagaaggagaaggccccggcggcttcgtccaagccggccaagtccggcg 439
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 438 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 379
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 378 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 319
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| ||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 318 agatcacgccatcagtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 259
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 258 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 199
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 198 agatcttcaccagggccacaaacac 174
>gb|BM368233.2|BM368233 EBed01_SQ002_I21_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_I21 5', mRNA sequence
Length = 558
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 55 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 114
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 115 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 174
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 175 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 234
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||| | | || || || |||| || ||||
Sbjct: 235 agatcacgccatccgtcctctccgagcgactcaagatcaacgggtctctggctcgcaggg 294
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 295 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 354
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 355 agatcttcaccagggccacaaacac 379
>gb|BM376767.2|BM376767 EBem05_SQ003_C21_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_C21 5', mRNA sequence
Length = 533
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 32 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 91
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 92 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 151
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 152 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 211
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 212 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 271
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 272 ctatcaaggacctgatggagagggggctcatcaagatggtgtcaatccactccagccagc 331
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 332 agatcttcaccagggccacaaacac 356
>gb|BM376287.2|BM376287 EBma01_SQ002_O17_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_O17 5', mRNA sequence
Length = 514
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 67 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 126
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 127 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 186
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 187 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 246
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 247 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 306
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 307 ctatcaaggacctgatggagagggggctcatcaagatggtgtcaatccactccagccagc 366
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 367 agatcttcaccagggccacaaacac 391
>gb|BQ768250.1|BQ768250 EBro08_SQ011_M04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_M04 5', mRNA sequence
Length = 556
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 35 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 94
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 95 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 154
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 155 cggtgctcttcgaccaggccacctactacaagctgctcaccgaggtgcccaagtacaagc 214
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 215 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 274
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 275 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 334
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 335 agatcttcaccagggccacaaacac 359
>gb|CV057924.1|CV057924 BNEL32d3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL32d3 5' similar to putative 40S
ribosomal protein S25, mRNA sequence
Length = 547
Score = 311 bits (157), Expect = 2e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 36 ccatggcgccgaagaaggagaaggccccggcggcttcgtccaagccggccaagtccggcg 95
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 96 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 155
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 156 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 215
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| ||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 216 agatcacgccatcagtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 275
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 276 ctatcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagc 335
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 336 agatcttcaccagggccacaaacac 360
>gb|AJ462580.1|AJ462580 AJ462580 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200063G01F1, mRNA sequence
Length = 300
Score = 309 bits (156), Expect = 7e-083
Identities = 249/280 (88%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 1 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 60
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 61 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 120
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 121 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 180
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 181 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 240
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggt 375
| |||||||| ||||||| | ||||||||| ||||||||
Sbjct: 241 ctatcaaggacctgatggagagggggctcatcaggatggt 280
>gb|BJ451335.1|BJ451335 BJ451335 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33j18 5', mRNA sequence
Length = 555
Score = 305 bits (154), Expect = 1e-081
Identities = 280/322 (86%)
Strand = Plus / Plus
Query: 99 tggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcg 158
|||| ||||||||||||||||||||| || | ||||||||||||||||||||||| ||||
Sbjct: 35 tggcgccgaagaaggagaaggccccggcggcttcgtccaagccggccaagtccggcggcg 94
Query: 159 ggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctg 218
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct: 95 ggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacgcgg 154
Query: 219 tgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcaga 278
|||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 155 tgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagcaga 214
Query: 279 tcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcca 338
|||| ||||| |||| || ||||| |||||| | || || || |||| || ||||| |
Sbjct: 215 tcacgccatcagtcctctccgagcgactcaggatcaacgggtctctggctcgcagggcta 274
Query: 339 tcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcaga 398
||||||| ||||||| | ||||||||| |||||||| || | || || ||||||||||
Sbjct: 275 tcaaggacctgatggagagggggctcatcaggatggtgtcaatccactccagccagcaga 334
Query: 399 tatacaccagggcaaccaacac 420
| | ||||||||| || |||||
Sbjct: 335 tcttcaccagggccacaaacac 356
>gb|BG299764.1|BG299764 HVSMEa0021L12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021L12f, mRNA sequence
Length = 896
Score = 303 bits (153), Expect = 4e-081
Identities = 248/280 (88%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 68 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 127
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 128 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 187
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 188 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 247
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 248 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 307
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggt 375
| |||||||| ||||||| | ||||||||| | ||||||
Sbjct: 308 ctatcaaggacctgatggagagggggctcatcangatggt 347
>gb|BM376400.2|BM376400 EBem05_SQ002_B24_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_B24 5', mRNA sequence
Length = 523
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 46 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 105
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 106 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 165
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 166 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 225
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||| | | || || || |||| || ||||
Sbjct: 226 agatcacgccatccgtcctctccgagcgactcaagatcaacgggtctctggctcgcaggg 285
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 286 ctatcaaggacctgatggagagggggctcatcaagatggtgtcaatccactccagccagc 345
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 346 agatcttcaccagggccacaaacac 370
>gb|BM369481.2|BM369481 EBem07_SQ003_L10_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_L10 5', mRNA sequence
Length = 558
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| |||||||| |||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 47 ccatggcgccgaagaacgagaaggccccggcggcgtcgtccaagccggccaagtccggcg 106
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 107 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 166
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 167 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 226
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 227 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 286
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 287 ctatcaaggacctgatggagagggggctcatcaagatggtgtcaatccactccagccagc 346
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 347 agatcttcaccagggccacaaacac 371
>gb|BQ764996.1|BQ764996 EBca01_SQ005_A17_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_A17 5', mRNA sequence
Length = 547
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 41 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 100
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 101 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 160
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||
Sbjct: 161 cggtgctcttcgaccaggccatctacgacaagctgctcaccgaggtgcccaagtacaagc 220
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||||| | || || || |||| || ||||
Sbjct: 221 agatcacgccatccgtcctctccgagcgactcaggatcaacgggtctctggctcgcaggg 280
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 281 ctatcaaggacctgatggagagggggctcatcaagatggtgtcaatccactccagccagc 340
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 341 agatcttcaccagggccacaaacac 365
>gb|BQ765983.1|BQ765983 EBro03_SQ008_P14_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_P14 5', mRNA sequence
Length = 496
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 41 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtccggcg 100
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 101 gcgggaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacg 160
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 161 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 220
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
||||||| |||||| |||| || ||||| |||| | | || || || |||| || ||||
Sbjct: 221 agatcacgccatccgtcctctccgagcgactcaagatcaacgggtctctggctcgcaggg 280
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| ||||||| | ||||||||| | |||||| || | || || |||||||
Sbjct: 281 ctatcaaggacctgatggagagggggctcatcaagatggtgtcaatccactccagccagc 340
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 341 agatcttcaccagggccacaaacac 365
>gb|CV055835.1|CV055835 BNEL124a11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL124a11 5' similar to putative 40S
ribosomal protein S25, mRNA sequence
Length = 591
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct: 63 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtcgggcg 122
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 123 gagggaagcagaagaagaagaagtggagcaagggcaagcaaaaggagaaggtgaacaacg 182
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 183 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 242
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
|||||||||| ||| |||| || ||||| |||||| | ||||| || |||| || ||||
Sbjct: 243 agatcaccccctccgtcctctccgagcgactcaggatcaatgggtctctggctcgcaggg 302
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| || |||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 303 ctatcaaggaccttatggagagggggctcatcaggatggtgtcgatccactccagccagc 362
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 363 agatcttcaccagggccacaaacac 387
>gb|CV056561.1|CV056561 BNEL19B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL19B5 5' similar to putative 40S
ribosomal protein S25, mRNA sequence
Length = 586
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct: 63 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtcgggcg 122
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 123 gagggaagcagaagaagaagaagtggagcaagggcaagcaaaaggagaaggtgaacaacg 182
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 183 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 242
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
|||||||||| ||| |||| || ||||| |||||| | ||||| || |||| || ||||
Sbjct: 243 agatcaccccctccgtcctctccgagcgactcaggatcaatgggtctctggctcgcaggg 302
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| || |||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 303 ctatcaaggaccttatggagagggggctcatcaggatggtgtcgatccactccagccagc 362
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 363 agatcttcaccagggccacaaacac 387
>gb|CV058555.1|CV058555 BNEL39c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL39c5 5' similar to putative 40S
ribosomal protein S25, mRNA sequence
Length = 601
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct: 61 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtcgggcg 120
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 121 gagggaagcagaagaagaagaagtggagcaagggcaagcaaaaggagaaggtgaacaacg 180
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 181 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 240
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
|||||||||| ||| |||| || ||||| |||||| | ||||| || |||| || ||||
Sbjct: 241 agatcaccccctccgtcctctccgagcgactcaggatcaatgggtctctggctcgcaggg 300
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| || |||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 301 ctatcaaggaccttatggagagggggctcatcaggatggtgtcgatccactccagccagc 360
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 361 agatcttcaccagggccacaaacac 385
>gb|CV062199.1|CV062199 BNEL77d5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL77d5 5' similar to putative 40S
ribosomal protein S25, mRNA sequence
Length = 562
Score = 303 bits (153), Expect = 4e-081
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||||||||||||| || | |||||||||||||||||||| || |
Sbjct: 42 ccatggcgccgaagaaggagaaggccccggcggcgtcgtccaagccggccaagtcgggcg 101
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 102 gagggaagcagaagaagaagaagtggagcaagggcaagcaaaaggagaaggtgaacaacg 161
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 162 cggtgctcttcgaccaggccacctacgacaagctgctcaccgaggtgcccaagtacaagc 221
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
|||||||||| ||| |||| || ||||| |||||| | ||||| || |||| || ||||
Sbjct: 222 agatcaccccctccgtcctctccgagcgactcaggatcaatgggtctctggctcgcaggg 281
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagc 395
| |||||||| || |||| | ||||||||| |||||||| || | || || |||||||
Sbjct: 282 ctatcaaggaccttatggagagggggctcatcaggatggtgtcgatccactccagccagc 341
Query: 396 agatatacaccagggcaaccaacac 420
|||| | ||||||||| || |||||
Sbjct: 342 agatcttcaccagggccacaaacac 366
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,169
Number of Sequences: 312970
Number of extensions: 152169
Number of successful extensions: 64359
Number of sequences better than 0.5: 184
Number of HSP's better than 0.5 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63972
Number of HSP's gapped (non-prelim): 242
length of query: 713
length of database: 175,134,539
effective HSP length: 19
effective length of query: 694
effective length of database: 169,188,109
effective search space: 117416547646
effective search space used: 117416547646
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)