BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. v... 196 7e-049
gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. v... 196 7e-049
gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm librar... 196 7e-049
gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm librar... 196 7e-049
gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. v... 180 4e-044
gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA li... 172 1e-041
gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke devel... 163 1e-038
gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke devel... 163 1e-038
gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 ... 163 1e-038
gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA li... 163 1e-038
gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. v... 163 1e-038
gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. v... 163 1e-038
gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. v... 163 1e-038
gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. v... 163 1e-038
gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. v... 163 1e-038
gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. v... 163 1e-038
gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, n... 155 2e-036
gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, n... 155 2e-036
gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hyd... 155 2e-036
gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. v... 155 2e-036
gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke devel... 147 6e-034
gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day ger... 147 6e-034
gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, wat... 147 6e-034
gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. v... 145 2e-033
gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke devel... 139 1e-031
gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 ... 135 2e-030
gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. v... 127 6e-028
gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. v... 123 9e-027
gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike... 113 8e-024
gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA,... 107 5e-022
gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. v... 107 5e-022
gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. v... 101 3e-020
gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA li... 82 3e-014
gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA li... 82 3e-014
>gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N19
5-PRIME, mRNA sequence
Length = 622
Score = 196 bits (99), Expect = 7e-049
Identities = 246/295 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 124 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 183
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || || |
Sbjct: 184 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgaga 243
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| ||||||||||| || ||||||||||| ||| |
Sbjct: 244 gcatttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggtt 303
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 304 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 363
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgat 496
|||||||||||| | ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 364 aagatgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatgat 418
>gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N23
5-PRIME, mRNA sequence
Length = 461
Score = 196 bits (99), Expect = 7e-049
Identities = 246/295 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 141 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 200
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || || |
Sbjct: 201 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgaga 260
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| ||||||||||| || ||||||||||| ||| |
Sbjct: 261 gcatttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggtt 320
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 321 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 380
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgat 496
|||||||||||| | ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 381 aagatgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatgat 435
>gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL21a1 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 629
Score = 196 bits (99), Expect = 7e-049
Identities = 246/295 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 116 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 175
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || || |
Sbjct: 176 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgaga 235
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| ||||||||||| || ||||||||||| ||| |
Sbjct: 236 gcatttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggtt 295
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 296 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 355
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgat 496
|||||||||||| | ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 356 aagatgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatgat 410
>gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46e5 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 643
Score = 196 bits (99), Expect = 7e-049
Identities = 246/295 (83%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 116 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 175
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || || |
Sbjct: 176 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgaga 235
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| ||||||||||| || ||||||||||| ||| |
Sbjct: 236 gcatttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggtt 295
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 296 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 355
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgat 496
|||||||||||| | ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 356 aagatgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatgat 410
>gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02I03
5-PRIME, mRNA sequence
Length = 623
Score = 180 bits (91), Expect = 4e-044
Identities = 244/295 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| | || ||||| | || |||||||| || |||
Sbjct: 98 aagaaggaggaggaggagttcagcaccgcgcccctgtccctgctcatgatgagcgtcaag 157
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || || |
Sbjct: 158 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgaga 217
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| || |||||||| || ||||||||||| ||| |
Sbjct: 218 gcatttgaccgtcattgcaacatggttctggagaacgttcgggagatgtggactgaggtt 277
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 278 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 337
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgat 496
|||||||||||| | ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 338 aagatgttcctccgcggcgactcggtcatcattgttctaaggaacccgaaatgat 392
>gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 3', mRNA sequence
Length = 728
Score = 172 bits (87), Expect = 1e-041
Identities = 237/287 (82%)
Strand = Plus / Minus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 536 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 477
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || | |
Sbjct: 476 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcatgaga 417
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 416 gcatttgaccgtcattgcaacatggttctcgagaacgttagggagatgtggactgaggtt 357
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 356 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 297
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaaccc 488
|||||||||||| | ||||||||||||||||| || || ||||||||
Sbjct: 296 aagatgttcctccgcggcgactcggtcatcattgttctaaggaaccc 250
>gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11T 5',
mRNA sequence
Length = 622
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 121 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 180
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 181 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 240
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 241 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 300
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 301 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 360
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 361 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 410
>gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01V 5',
mRNA sequence
Length = 594
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 134 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 193
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 194 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 253
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 254 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 313
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 314 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 373
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 374 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 423
>gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089G22f, mRNA sequence
Length = 650
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 116 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 175
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 176 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 235
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 236 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 295
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 296 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 355
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 356 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 405
>gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 3', mRNA sequence
Length = 628
Score = 163 bits (82), Expect = 1e-038
Identities = 202/242 (83%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || |||||||| |||||||| || ||||| ||||| ||||||||||||||
Sbjct: 498 atgatgagcgtcaagaacaatacccaggtacttatcaactgccggaacaacaagaagcta 439
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
||||| || | | || ||||| || || || |||||||| ||||||||||| | |||
Sbjct: 438 cttggtcgcatgagagcatttgaccgtcattgcaacatggttctcgagaacgttagggag 379
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || ||||||||||| ||||| |||||||| || || |||||||||
Sbjct: 378 atgtggactgaggttccaaagactggcaaaggcaagaagaaggcccttccagtgaacaag 319
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
|| || |||||||| |||||||||||| | ||||||||||||||||| || || ||||||
Sbjct: 318 gacaggttcatcagcaagatgttcctccgcggcgactcggtcatcattgttctaaggaac 259
Query: 487 cc 488
||
Sbjct: 258 cc 257
>gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. vulgare cDNA clone HB11O15
5-PRIME, mRNA sequence
Length = 476
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 105 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 164
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 165 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 224
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 225 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 284
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 285 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 344
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 345 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 394
>gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12B16
5-PRIME, mRNA sequence
Length = 535
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 129 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 188
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 189 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 248
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 249 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 308
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 309 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 368
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 369 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 418
>gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. vulgare cDNA clone HF06M14
5-PRIME, mRNA sequence
Length = 572
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 64 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 123
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 124 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 183
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 184 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 243
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 244 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 303
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 304 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 353
>gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B05
5-PRIME, mRNA sequence
Length = 585
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 91 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 150
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 151 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 210
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 211 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 270
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 271 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 330
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 331 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 380
>gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13I22
5-PRIME, mRNA sequence
Length = 634
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 122 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 181
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 182 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 241
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 242 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 301
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 302 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 361
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 362 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 411
>gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. vulgare cDNA clone HS05G17
5-PRIME, mRNA sequence
Length = 533
Score = 163 bits (82), Expect = 1e-038
Identities = 238/290 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 165 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 224
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 225 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 284
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 285 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 344
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 345 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 404
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 405 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 454
>gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_N15 5', mRNA sequence
Length = 529
Score = 155 bits (78), Expect = 2e-036
Identities = 237/290 (81%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || || || |||| ||| | || || |||
Sbjct: 122 aagaaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaag 181
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 182 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 241
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 242 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 301
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 302 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 361
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 362 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 411
>gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P19 5', mRNA sequence
Length = 465
Score = 155 bits (78), Expect = 2e-036
Identities = 237/290 (81%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || || || |||| ||| | || || |||
Sbjct: 149 aagaaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaag 208
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 209 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 268
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 269 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 328
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 329 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 388
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 389 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 438
>gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_A04 5', mRNA sequence
Length = 636
Score = 155 bits (78), Expect = 2e-036
Identities = 237/290 (81%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || || || |||| ||| | || || |||
Sbjct: 119 aagaaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaag 178
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 179 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 238
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 239 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 298
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 299 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 358
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 359 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 408
>gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63H11
5-PRIME, mRNA sequence
Length = 390
Score = 155 bits (78), Expect = 2e-036
Identities = 207/250 (82%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 141 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 200
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || || |
Sbjct: 201 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcgtgaga 260
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || || || |||||||| ||||||||||| || ||||||||||| ||| |
Sbjct: 261 gcatttgaccgtcattgcaacatggttctcgagaacgttcgggagatgtggactgaggtt 320
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||||||||| ||||| |||||||| || || ||||||||||| || ||||||||
Sbjct: 321 ccaaagactggcaaaggcaagaagaaggcccttccagtgaacaaggacaggttcatcagc 380
Query: 442 aagatgttcc 451
||||||||||
Sbjct: 381 aagatgttcc 390
>gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11u 3',
mRNA sequence
Length = 554
Score = 147 bits (74), Expect = 6e-034
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 259 aagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgtt 318
||||||||||||||||| || ||||| | ||| |||||||||||| ||||||| || ||
Sbjct: 474 aagaacaacacccaggtgcttatcaactnccggaacaacaagaagttgcttggtcgcgtg 415
Query: 319 cgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagag 378
| || ||||| || ||||| |||||||| ||||||||||| | ||||||||||| |||
Sbjct: 414 agggcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgag 355
Query: 379 atccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatc 438
| || |||||||| || ||||| |||||||| || || ||||||||||| || |||||
Sbjct: 354 gttccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcata 295
Query: 439 agtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|| |||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 294 agcaagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 242
>gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N07 5', mRNA sequence
Length = 459
Score = 147 bits (74), Expect = 6e-034
Identities = 236/290 (81%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || || || |||| ||| | || || |||
Sbjct: 64 aagaaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaag 123
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 124 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 183
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 184 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 243
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| |||||||| || || ||||||||||| || ||||| ||
Sbjct: 244 ccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagc 303
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||| || | || || ||||||||||| || || |||||||||||
Sbjct: 304 aagatgttcttccgcggggattcggtcatcatcgtcctcaggaacccgaa 353
>gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_P20 5', mRNA sequence
Length = 524
Score = 147 bits (74), Expect = 6e-034
Identities = 236/290 (81%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || || || |||| ||| | || || |||
Sbjct: 119 aagaaggaggaggaggagttcagcacggggcccctctccatcctcatgctcagcgtcaag 178
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 179 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 238
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 239 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 298
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| |||||||| || ||||| ||||| || || || ||||||||||| || ||||| ||
Sbjct: 299 ccaaagactggtaaaggcaagaagaaagccctcccggtgaacaaggacaggttcataagc 358
Query: 442 aagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 359 aagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 408
>gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52P01
5-PRIME, mRNA sequence
Length = 396
Score = 145 bits (73), Expect = 2e-033
Identities = 136/157 (86%)
Strand = Plus / Plus
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggc 399
|||||||| ||||||||||| || ||||||||||| ||| | || ||||||||||| |||
Sbjct: 13 aacatggttctcgagaacgttcgggagatgtggactgaggttccaaagactggcaaaggc 72
Query: 400 aaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggc 459
|| |||||||| || || ||||||||||| || |||||||| |||||||||||| | |||
Sbjct: 73 aagaagaaggcccttccagtgaacaaggacaggttcatcagcaagatgttcctccgcggc 132
Query: 460 gactcggtcatcatagtgctgaggaacccgaagtgat 496
|||||||||||||| || || ||||||||||| ||||
Sbjct: 133 gactcggtcatcattgttctaaggaacccgaaatgat 169
>gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01u 3',
mRNA sequence
Length = 540
Score = 139 bits (70), Expect = 1e-031
Identities = 194/234 (82%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 259 aagaacaacacccaggtcctcatcaattgcc-gcaacaacaagaagctgcttggccgtgt 317
||||||||||||||||| || ||||| |||| | |||||||||||| ||||||| || ||
Sbjct: 482 aagaacaacacccaggtgcttatcaactgcccggaacaacaagaagttgcttggtcgcgt 423
Query: 318 tcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacaga 377
| || ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||
Sbjct: 422 gagggcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactga 363
Query: 378 gatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcat 437
| | || |||||||| || ||||| |||||||| || || ||||||||||| || |||||
Sbjct: 362 ggttccaaagactggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcat 303
Query: 438 cagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|| |||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 302 aagcaagatgttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 249
>gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089A22f, mRNA sequence
Length = 958
Score = 135 bits (68), Expect = 2e-030
Identities = 231/284 (81%), Gaps = 1/284 (0%)
Strand = Plus / Minus
Query: 209 aggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaaca 268
|||||||||| || ||||| ||||| || || |||| ||| | || || |||| |||||
Sbjct: 496 aggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaagaccaaca 437
Query: 269 ccc-aggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgctttt 327
||| |||| || ||||| ||||| |||||||||||| ||||||| || || | || |||
Sbjct: 436 ccccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagggcattt 377
Query: 328 gatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaag 387
|| || ||||| |||||||| ||||||||||| | ||||||||||| ||| | || |||
Sbjct: 376 gaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggttccaaag 317
Query: 388 actggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatg 447
||||| || ||||| |||||||| || || ||||||||||| || ||||| || ||||||
Sbjct: 316 actggtaaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaagatg 257
Query: 448 ttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||| | || || ||||||||||| || || |||||||||||
Sbjct: 256 ttcctccgcggggattcggtcatcatcgtcctcaggaacccgaa 213
>gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
3-PRIME, mRNA sequence
Length = 492
Score = 127 bits (64), Expect = 6e-028
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||| ||||| |||||||||||| ||||||| || || | || ||||| || |||||
Sbjct: 488 atcaactgccggaacaacaagaagttgcttggtcgcgtgagggcatttgaccgtcactgc 429
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggc 399
|||||||| ||||||||||| | ||||||||||| ||| | || |||||||| || |||
Sbjct: 428 aacatggttctcgagaacgtcagggagatgtggactgaggttccaaagactggtaaaggc 369
Query: 400 aaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggc 459
|| |||||||| || || ||||||||||| || ||||| || |||||||||||| | ||
Sbjct: 368 aagaagaaggccctcccggtgaacaaggacaggttcataagcaagatgttcctccgcggg 309
Query: 460 gactcggtcatcatagtgctgaggaacccgaa 491
|| ||||||||||| || || |||||||||||
Sbjct: 308 gattcggtcatcatcgtcctcaggaacccgaa 277
>gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
3-PRIME, mRNA sequence
Length = 474
Score = 123 bits (62), Expect = 9e-027
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 286 tgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgtaacatg 345
||||| |||||||||||| ||||||| || || | || ||||| || ||||| ||||||
Sbjct: 462 tgccggaacaacaagaagttgcttggtcgcgtgagggcatttgaccgtcactgcaacatg 403
Query: 346 gtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggcaaaaag 405
|| ||||||||||| | ||||||||||| ||| | || |||||||| || ||||| |||
Sbjct: 402 gttctcgagaacgtcagggagatgtggactgaggttccaaagactggtaaaggcaagaag 343
Query: 406 aaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgactcg 465
||||| || || ||||||||||| || ||||| || |||||||||||| | || || |||
Sbjct: 342 aaggccctcccggtgaacaaggacaggttcataagcaagatgttcctccgcggggattcg 283
Query: 466 gtcatcatagtgctgaggaacccgaa 491
|||||||| || || |||||||||||
Sbjct: 282 gtcatcatcgtcctcaggaacccgaa 257
>gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025B11f, mRNA sequence
Length = 406
Score = 113 bits (57), Expect = 8e-024
Identities = 108/125 (86%)
Strand = Plus / Plus
Query: 364 gagatgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaac 423
||||||||||| ||| | || ||||||||||| ||||| |||||||| || || ||||||
Sbjct: 13 gagatgtggactgaggttccaaagactggcaaaggcaagaagaaggcccttccagtgaac 72
Query: 424 aaggatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgagg 483
||||| || |||||||| |||||||||||| | ||||||||||||||||| || || |||
Sbjct: 73 aaggacaggttcatcagcaagatgttcctccgcggcgactcggtcatcattgttctaagg 132
Query: 484 aaccc 488
|||||
Sbjct: 133 aaccc 137
>gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_I15 5', mRNA sequence
Length = 393
Score = 107 bits (54), Expect = 5e-022
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 334 cactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggc 393
||||| |||||||| ||||||||||| | ||||||||||| ||| | || ||||||||
Sbjct: 1 cactgcaacatggttctcgagaacgtcagggagatgtggactgaggttccaaagactggt 60
Query: 394 aagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctc 453
|| ||||| |||||||| || || ||||||||||| || ||||| || ||||||||||||
Sbjct: 61 aaaggcaagaagaaggccctcccggtgaacaaggacaggttcataagcaagatgttcctc 120
Query: 454 aggggcgactcggtcatcatagtgctgaggaacccgaa 491
| || || ||||||||||| || || |||||||||||
Sbjct: 121 cgcggggattcggtcatcatcgtcctcaggaacccgaa 158
>gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
5-PRIME, mRNA sequence
Length = 474
Score = 107 bits (54), Expect = 5e-022
Identities = 169/206 (82%), Gaps = 1/206 (0%)
Strand = Plus / Plus
Query: 286 tgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgtaacatg 345
||||| |||||||||||| ||||||| || || | || ||||| || |||| ||||||
Sbjct: 13 tgccggaacaacaagaagttgcttggtcgcgtgagggcatttgaccgt-actgcaacatg 71
Query: 346 gtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggcaaaaag 405
|| ||||||||||| | ||||||||||| ||| | || |||||||| || ||||| |||
Sbjct: 72 gttctcgagaacgtcagggagatgtggactgaggttccaaagactggtaaaggcaagaag 131
Query: 406 aaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgactcg 465
||||| || || ||||||||||| || ||||| || |||||||||||| | || || |||
Sbjct: 132 aaggccctcccggtgaacaaggacaggttcataagcaagatgttcctccgcggggattcg 191
Query: 466 gtcatcatagtgctgaggaacccgaa 491
|||||||| || || |||||||||||
Sbjct: 192 gtcatcatcgtcctcaggaacccgaa 217
>gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
5-PRIME, mRNA sequence
Length = 376
Score = 101 bits (51), Expect = 3e-020
Identities = 156/191 (81%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| ||||| || || |||| ||| | || || |||
Sbjct: 179 aagaaggaggaggaggagttcagcacgggccccctctccatcctcatgctcagcgtcaag 238
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||||||||| || ||||| ||||| |||||||||||| ||||||| || || |
Sbjct: 239 aacaacacccaggtgcttatcaactgccggaacaacaagaagttgcttggtcgcgtgagg 298
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
|| ||||| || ||||| |||||||| ||||||||||| | ||||||||||| ||| |
Sbjct: 299 gcatttgaccgtcactgcaacatggttctcgagaacgtcagggagatgtggactgaggtt 358
Query: 382 cccaagactgg 392
|| ||||||||
Sbjct: 359 ccaaagactgg 369
>gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 5', mRNA sequence
Length = 513
Score = 81.8 bits (41), Expect = 3e-014
Identities = 140/173 (80%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 337 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 396
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || | |
Sbjct: 397 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcatgaga 456
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggac 374
|| ||||| || || || |||||||| ||||||||||| | |||||||||||
Sbjct: 457 gcatttgaccgtcattgcaacatggttctcgagaacgttagggagatgtggac 509
>gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 5', mRNA sequence
Length = 499
Score = 81.8 bits (41), Expect = 3e-014
Identities = 140/173 (80%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||||||||| || ||||| || || ||||| | || |||||||| || |||
Sbjct: 327 aagaaggaggaggaggagttcagcaccgggcccctgtccctgctcatgatgagcgtcaag 386
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
||||| |||||||| || ||||| ||||| |||||||||||||| ||||| || | |
Sbjct: 387 aacaatacccaggtacttatcaactgccggaacaacaagaagctacttggtcgcatgaga 446
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggac 374
|| ||||| || || || |||||||| ||||||||||| | |||||||||||
Sbjct: 447 gcatttgaccgtcattgcaacatggttctcgagaacgttagggagatgtggac 499
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,873
Number of Sequences: 312970
Number of extensions: 94873
Number of successful extensions: 25246
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25192
Number of HSP's gapped (non-prelim): 41
length of query: 739
length of database: 175,134,539
effective HSP length: 19
effective length of query: 720
effective length of database: 169,188,109
effective search space: 121815438480
effective search space used: 121815438480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)