BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. v... 206 7e-052
gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. v... 206 7e-052
gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm librar... 206 7e-052
gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm librar... 206 7e-052
gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA li... 198 2e-049
gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA li... 194 3e-048
gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. v... 194 3e-048
gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke devel... 178 2e-043
gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke devel... 178 2e-043
gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 ... 178 2e-043
gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, n... 178 2e-043
gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, n... 178 2e-043
gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hyd... 178 2e-043
gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. v... 178 2e-043
gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. v... 178 2e-043
gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. v... 178 2e-043
gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. v... 178 2e-043
gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. v... 178 2e-043
gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. v... 178 2e-043
gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke devel... 172 1e-041
gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. v... 172 1e-041
gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day ger... 170 4e-041
gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, wat... 170 4e-041
gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke devel... 165 2e-039
gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. v... 161 4e-038
gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 ... 159 1e-037
gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. v... 153 9e-036
gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. v... 149 1e-034
gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike... 145 2e-033
gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA,... 133 8e-030
gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. v... 133 8e-030
gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. v... 107 5e-022
gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA li... 84 7e-015
gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA li... 84 7e-015
>gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N19
5-PRIME, mRNA sequence
Length = 622
Score = 206 bits (104), Expect = 7e-052
Identities = 242/288 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 410 gggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctgatgaacctg 351
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 350 tccttgttcactggaagggccttcttcttgcctttgccagtctttggaacctcagtccac 291
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
|||||||| ||||||||||| |||||||| || || || ||||| || | || || |||
Sbjct: 290 atctcccgaacgttctcgagaaccatgttgcaatgacggtcaaatgctctcacgcgacca 231
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|| |||||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||
Sbjct: 230 agtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacgctcatc 171
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
|| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 170 atgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 123
>gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N23
5-PRIME, mRNA sequence
Length = 461
Score = 206 bits (104), Expect = 7e-052
Identities = 242/288 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 427 gggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctgatgaacctg 368
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 367 tccttgttcactggaagggccttcttcttgcctttgccagtctttggaacctcagtccac 308
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
|||||||| ||||||||||| |||||||| || || || ||||| || | || || |||
Sbjct: 307 atctcccgaacgttctcgagaaccatgttgcaatgacggtcaaatgctctcacgcgacca 248
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|| |||||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||
Sbjct: 247 agtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacgctcatc 188
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
|| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 187 atgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 140
>gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL21a1 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 629
Score = 206 bits (104), Expect = 7e-052
Identities = 242/288 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 402 gggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctgatgaacctg 343
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 342 tccttgttcactggaagggccttcttcttgcctttgccagtctttggaacctcagtccac 283
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
|||||||| ||||||||||| |||||||| || || || ||||| || | || || |||
Sbjct: 282 atctcccgaacgttctcgagaaccatgttgcaatgacggtcaaatgctctcacgcgacca 223
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|| |||||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||
Sbjct: 222 agtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacgctcatc 163
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
|| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 162 atgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 115
>gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46e5 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 643
Score = 206 bits (104), Expect = 7e-052
Identities = 242/288 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 402 gggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctgatgaacctg 343
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 342 tccttgttcactggaagggccttcttcttgcctttgccagtctttggaacctcagtccac 283
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
|||||||| ||||||||||| |||||||| || || || ||||| || | || || |||
Sbjct: 282 atctcccgaacgttctcgagaaccatgttgcaatgacggtcaaatgctctcacgcgacca 223
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|| |||||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||
Sbjct: 222 agtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacgctcatc 163
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
|| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 162 atgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 115
>gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 3', mRNA sequence
Length = 728
Score = 198 bits (100), Expect = 2e-049
Identities = 247/296 (83%)
Strand = Plus / Plus
Query: 291 atcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctga 350
|||| ||||||||||| || || ||||||||||||||||| | |||||||||||||||||
Sbjct: 242 atcatttggggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctga 301
Query: 351 tgaatctatccttgttcacaggcagagccttctttttgcccttgccagtcttggggacct 410
|||| || ||||||||||| || || |||||||| ||||| ||||||||||| || ||||
Sbjct: 302 tgaacctgtccttgttcactggaagggccttcttcttgcctttgccagtctttggaacct 361
Query: 411 ctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaa 470
| ||||||||||||| ||||||||||| |||||||| || || || ||||| || | |
Sbjct: 362 cagtccacatctccctaacgttctcgagaaccatgttgcaatgacggtcaaatgctctca 421
Query: 471 cccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaa 530
|| ||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| |
Sbjct: 422 tgcgaccaagtagcttcttgttgttccggcagttgataagtacctgggtattgttcttga 481
Query: 531 cactcatcattagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
| |||||||| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 482 cgctcatcatgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 537
>gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 3', mRNA sequence
Length = 628
Score = 194 bits (98), Expect = 3e-048
Identities = 212/250 (84%)
Strand = Plus / Plus
Query: 291 atcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctga 350
|||| ||||||||||| || || ||||||||||||||||| | |||||||||||||||||
Sbjct: 249 atcatttggggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctga 308
Query: 351 tgaatctatccttgttcacaggcagagccttctttttgcccttgccagtcttggggacct 410
|||| || ||||||||||| || || |||||||| ||||| ||||||||||| || ||||
Sbjct: 309 tgaacctgtccttgttcactggaagggccttcttcttgcctttgccagtctttggaacct 368
Query: 411 ctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaa 470
| ||||||||||||| ||||||||||| |||||||| || || || ||||| || | |
Sbjct: 369 cagtccacatctccctaacgttctcgagaaccatgttgcaatgacggtcaaatgctctca 428
Query: 471 cccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaa 530
|| ||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| |
Sbjct: 429 tgcgaccaagtagcttcttgttgttccggcagttgataagtacctgggtattgttcttga 488
Query: 531 cactcatcat 540
| ||||||||
Sbjct: 489 cgctcatcat 498
>gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02I03
5-PRIME, mRNA sequence
Length = 623
Score = 194 bits (98), Expect = 3e-048
Identities = 206/242 (85%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 384 gggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctgatgaacctg 325
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 324 tccttgttcactggaagggccttcttcttgcctttgccagtctttggaacctcagtccac 265
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
|||||||| |||||||| || |||||||| || || || ||||| || | || || |||
Sbjct: 264 atctcccgaacgttctccagaaccatgttgcaatgacggtcaaatgctctcacgcgacca 205
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
|| |||||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||
Sbjct: 204 agtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacgctcatc 145
Query: 539 at 540
||
Sbjct: 144 at 143
>gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11T 5',
mRNA sequence
Length = 622
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 407 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 348
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 347 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 288
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 287 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 228
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 227 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 178
>gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01V 5',
mRNA sequence
Length = 594
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 420 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 361
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 360 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 301
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 300 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 241
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 240 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 191
>gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089G22f, mRNA sequence
Length = 650
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 402 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 343
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 342 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 283
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 282 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 223
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 222 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 173
>gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_N15 5', mRNA sequence
Length = 529
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 408 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 349
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 348 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 289
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 288 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 229
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 228 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 179
>gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P19 5', mRNA sequence
Length = 465
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 435 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 376
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 375 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 316
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 315 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 256
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 255 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 206
>gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_A04 5', mRNA sequence
Length = 636
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 405 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 346
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 345 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 286
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 285 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 226
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 225 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 176
>gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. vulgare cDNA clone HB11O15
5-PRIME, mRNA sequence
Length = 476
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 391 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 332
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 331 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 272
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 271 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 212
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 211 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 162
>gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12B16
5-PRIME, mRNA sequence
Length = 535
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 415 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 356
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 355 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 296
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 295 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 236
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 235 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 186
>gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. vulgare cDNA clone HF06M14
5-PRIME, mRNA sequence
Length = 572
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 350 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 291
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 290 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 231
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 230 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 171
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 170 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 121
>gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B05
5-PRIME, mRNA sequence
Length = 585
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 377 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 318
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 317 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 258
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 257 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 198
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 197 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 148
>gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13I22
5-PRIME, mRNA sequence
Length = 634
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 408 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 349
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 348 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 289
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 288 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 229
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 228 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 179
>gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. vulgare cDNA clone HS05G17
5-PRIME, mRNA sequence
Length = 533
Score = 178 bits (90), Expect = 2e-043
Identities = 195/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 451 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 392
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 391 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 332
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 331 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 272
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 271 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 222
>gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11u 3',
mRNA sequence
Length = 554
Score = 172 bits (87), Expect = 1e-041
Identities = 194/230 (84%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 245 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 304
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 305 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 364
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 365 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 424
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||| | ||||| || |||||||||||||||||
Sbjct: 425 agcaacttcttgttgttccggnagttgataagcacctgggtgttgttctt 474
>gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63H11
5-PRIME, mRNA sequence
Length = 390
Score = 172 bits (87), Expect = 1e-041
Identities = 210/251 (83%)
Strand = Plus / Minus
Query: 336 ggaacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgc 395
||||||||||||||||||| || ||||||||||| || || |||||||| ||||| ||||
Sbjct: 390 ggaacatcttgctgatgaacctgtccttgttcactggaagggccttcttcttgcctttgc 331
Query: 396 cagtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggc 455
||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || |
Sbjct: 330 cagtctttggaacctcagtccacatctcccgaacgttctcgagaaccatgttgcaatgac 271
Query: 456 gatcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacct 515
| ||||| || | || || ||||| |||||||||||||| ||||| ||||| || ||||
Sbjct: 270 ggtcaaatgctctcacgcgaccaagtagcttcttgttgttccggcagttgataagtacct 211
Query: 516 gggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattcctctt 575
|||| |||||||| || |||||||| || | ||||| || || ||||| || ||||| |
Sbjct: 210 gggtattgttcttgacgctcatcatgagcagggacaggggcccggtgctgaactcctcct 151
Query: 576 cctctttcttc 586
|||| ||||||
Sbjct: 150 cctccttcttc 140
>gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N07 5', mRNA sequence
Length = 459
Score = 170 bits (86), Expect = 4e-041
Identities = 194/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | || |||||||||||| ||||| ||
Sbjct: 350 gggttcctgaggacgatgatgaccgaatccccgcggaagaacatcttgcttatgaacctg 291
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 290 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 231
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 230 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 171
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 170 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 121
>gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_P20 5', mRNA sequence
Length = 524
Score = 170 bits (86), Expect = 4e-041
Identities = 194/230 (84%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 405 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 346
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || || ||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 345 tccttgttcaccgggagggctttcttcttgcctttaccagtctttggaacctcagtccac 286
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 285 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 226
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 225 agcaacttcttgttgttccggcagttgataagcacctgggtgttgttctt 176
>gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01u 3',
mRNA sequence
Length = 540
Score = 165 bits (83), Expect = 2e-039
Identities = 195/231 (84%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 252 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 311
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 312 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 371
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 372 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 431
Query: 479 agcagcttcttgttgttgc-ggcaattgatgagaacctgggtgttgttctt 528
|||| |||||||||||| | |||| ||||| || |||||||||||||||||
Sbjct: 432 agcaacttcttgttgttccgggcagttgataagcacctgggtgttgttctt 482
>gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52P01
5-PRIME, mRNA sequence
Length = 396
Score = 161 bits (81), Expect = 4e-038
Identities = 132/149 (88%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 161 gggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctgatgaacctg 102
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 101 tccttgttcactggaagggccttcttcttgcctttgccagtctttggaacctcagtccac 42
Query: 419 atctcccgcacgttctcgagcaccatgtt 447
|||||||| ||||||||||| ||||||||
Sbjct: 41 atctcccgaacgttctcgagaaccatgtt 13
>gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089A22f, mRNA sequence
Length = 958
Score = 159 bits (80), Expect = 1e-037
Identities = 185/220 (84%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 216 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 275
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 276 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 335
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 336 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 395
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctggg 518
|||| |||||||||||| ||||| ||||| || |||||||
Sbjct: 396 agcaacttcttgttgttccggcagttgataagcacctggg 435
>gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
3-PRIME, mRNA sequence
Length = 492
Score = 153 bits (77), Expect = 9e-036
Identities = 176/209 (84%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 280 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 339
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 340 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 399
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 400 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 459
Query: 479 agcagcttcttgttgttgcggcaattgat 507
|||| |||||||||||| ||||| |||||
Sbjct: 460 agcaacttcttgttgttccggcagttgat 488
>gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
3-PRIME, mRNA sequence
Length = 474
Score = 149 bits (75), Expect = 1e-034
Identities = 171/203 (84%)
Strand = Plus / Plus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 260 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 319
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 320 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 379
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| ||||| || ||||| || | || || |||
Sbjct: 380 atctccctgacgttctcgagaaccatgttgcagtgacggtcaaatgccctcacgcgacca 439
Query: 479 agcagcttcttgttgttgcggca 501
|||| |||||||||||| |||||
Sbjct: 440 agcaacttcttgttgttccggca 462
>gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025B11f, mRNA sequence
Length = 406
Score = 145 bits (73), Expect = 2e-033
Identities = 127/145 (87%)
Strand = Plus / Minus
Query: 291 atcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctga 350
|||| ||||||||||| || || ||||||||||||||||| | |||||||||||||||||
Sbjct: 145 atcatttggggttccttagaacaatgatgaccgagtcgccgcggaggaacatcttgctga 86
Query: 351 tgaatctatccttgttcacaggcagagccttctttttgcccttgccagtcttggggacct 410
|||| || ||||||||||| || || |||||||| ||||| ||||||||||| || ||||
Sbjct: 85 tgaacctgtccttgttcactggaagggccttcttcttgcctttgccagtctttggaacct 26
Query: 411 ctgtccacatctcccgcacgttctc 435
| ||||||||||||| ||||||||
Sbjct: 25 cagtccacatctccctaacgttctc 1
>gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_I15 5', mRNA sequence
Length = 393
Score = 133 bits (67), Expect = 8e-030
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 155 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 96
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 95 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 36
Query: 419 atctcccgcacgttctcgagcaccatgttacagtg 453
||||||| ||||||||||| |||||||| |||||
Sbjct: 35 atctccctgacgttctcgagaaccatgttgcagtg 1
>gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
5-PRIME, mRNA sequence
Length = 474
Score = 133 bits (67), Expect = 8e-030
Identities = 170/203 (83%), Gaps = 1/203 (0%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || |||||||||||||| || || | ||||||||||||||| ||||| ||
Sbjct: 214 gggttcctgaggacgatgatgaccgaatccccgcggaggaacatcttgcttatgaacctg 155
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 154 tccttgttcaccgggagggccttcttcttgcctttaccagtctttggaacctcagtccac 95
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| ||||||||||| |||||||| |||| || ||||| || | || || |||
Sbjct: 94 atctccctgacgttctcgagaaccatgttgcagt-acggtcaaatgccctcacgcgacca 36
Query: 479 agcagcttcttgttgttgcggca 501
|||| |||||||||||| |||||
Sbjct: 35 agcaacttcttgttgttccggca 13
>gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
5-PRIME, mRNA sequence
Length = 376
Score = 107 bits (54), Expect = 5e-022
Identities = 114/134 (85%)
Strand = Plus / Minus
Query: 395 ccagtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtgg 454
|||||||| || ||||| ||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 369 ccagtctttggaacctcagtccacatctccctgacgttctcgagaaccatgttgcagtga 310
Query: 455 cgatcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacc 514
|| ||||| || | || || ||||||| |||||||||||| ||||| ||||| || |||
Sbjct: 309 cggtcaaatgccctcacgcgaccaagcaacttcttgttgttccggcagttgataagcacc 250
Query: 515 tgggtgttgttctt 528
||||||||||||||
Sbjct: 249 tgggtgttgttctt 236
>gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 5', mRNA sequence
Length = 513
Score = 83.8 bits (42), Expect = 7e-015
Identities = 141/174 (81%)
Strand = Plus / Minus
Query: 413 gtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacc 472
||||||||||||| ||||||||||| |||||||| || || || ||||| || | |
Sbjct: 509 gtccacatctccctaacgttctcgagaaccatgttgcaatgacggtcaaatgctctcatg 450
Query: 473 cggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaaca 532
|| ||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 449 cgaccaagtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacg 390
Query: 533 ctcatcattagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
|||||||| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 389 ctcatcatgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 336
>gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 5', mRNA sequence
Length = 499
Score = 83.8 bits (42), Expect = 7e-015
Identities = 141/174 (81%)
Strand = Plus / Minus
Query: 413 gtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacc 472
||||||||||||| ||||||||||| |||||||| || || || ||||| || | |
Sbjct: 499 gtccacatctccctaacgttctcgagaaccatgttgcaatgacggtcaaatgctctcatg 440
Query: 473 cggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaaca 532
|| ||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 439 cgaccaagtagcttcttgttgttccggcagttgataagtacctgggtattgttcttgacg 380
Query: 533 ctcatcattagtactgacagagggcctgtgctaaattcctcttcctctttcttc 586
|||||||| || | ||||| || || ||||| || ||||| ||||| ||||||
Sbjct: 379 ctcatcatgagcagggacaggggcccggtgctgaactcctcctcctccttcttc 326
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,281
Number of Sequences: 312970
Number of extensions: 76281
Number of successful extensions: 21135
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21089
Number of HSP's gapped (non-prelim): 39
length of query: 687
length of database: 175,134,539
effective HSP length: 19
effective length of query: 668
effective length of database: 169,188,109
effective search space: 113017656812
effective search space used: 113017656812
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)