BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.5
(545 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV833011.1|AV833011 AV833011 K. Sato unpublished cDNA li... 216 6e-055
gb|BG343883.1|BG343883 HVSMEg0007A05f Hordeum vulgare pre-a... 216 6e-055
gb|BE196470.2|BE196470 HVSMEh0092G06f Hordeum vulgare 5-45 ... 216 6e-055
gb|BE559303.2|BE559303 HV_CEb0023I09f Hordeum vulgare seedl... 216 6e-055
gb|BF631453.3|BF631453 HVSMEb0015P24f Hordeum vulgare seedl... 216 6e-055
gb|BF259382.3|BF259382 HVSMEf0019H02f Hordeum vulgare seedl... 216 6e-055
gb|BF267552.3|BF267552 HV_CEa0018E04f Hordeum vulgare seedl... 216 6e-055
gb|BE216876.3|BE216876 HV_CEb0011O14f Hordeum vulgare seedl... 216 6e-055
gb|BM374273.1|BM374273 EBpi03_SQ003_C14_R pistil, 4 DPA, no... 216 6e-055
gb|BM376577.1|BM376577 EBem05_SQ002_J23_R embryo, 14 DPA, n... 216 6e-055
gb|BM444840.1|BM444840 EBem09_SQ006_K06_R embryo, 1 Day ger... 216 6e-055
gb|AJ434154.1|AJ434154 AJ434154 S00002 Hordeum vulgare subs... 216 6e-055
gb|AJ435242.1|AJ435242 AJ435242 S00002 Hordeum vulgare subs... 216 6e-055
gb|AJ462582.1|AJ462582 AJ462582 S00002 Hordeum vulgare subs... 216 6e-055
gb|BJ473902.1|BJ473902 BJ473902 K. Sato unpublished cDNA li... 216 6e-055
gb|BQ459891.1|BQ459891 HA07M10r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BQ460530.1|BQ460530 HA09D20r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BQ464636.1|BQ464636 HF02N09r HF Hordeum vulgare subsp. v... 216 6e-055
gb|BQ469228.1|BQ469228 HM03M12r HM Hordeum vulgare subsp. v... 216 6e-055
gb|BQ470479.1|BQ470479 HX03B19r HX Hordeum vulgare subsp. v... 216 6e-055
gb|BQ661493.1|BQ661493 HM03M12u HM Hordeum vulgare subsp. v... 216 6e-055
gb|BQ665347.1|BQ665347 HX03B19u HX Hordeum vulgare subsp. v... 216 6e-055
gb|BM368930.2|BM368930 EBem07_SQ002_A20_R embryo, 28 DPA, n... 216 6e-055
gb|BM443906.2|BM443906 EBem09_SQ002_A02_R embryo, 1 Day ger... 216 6e-055
gb|BM374387.2|BM374387 EBpi03_SQ003_H18_R pistil, 4 DPA, no... 216 6e-055
gb|BI778125.2|BI778125 EBro07_SQ002_E19_R root, 3 week, red... 216 6e-055
gb|BQ756841.1|BQ756841 EBem09_SQ003_O17_R embryo, 1 Day ger... 216 6e-055
gb|BQ761328.1|BQ761328 EBro06_SQ001_C13_R root, 3 week, dro... 216 6e-055
gb|BQ761736.1|BQ761736 EBem10_SQ001_O16_R embryo, 2 Day ger... 216 6e-055
gb|BQ762654.1|BQ762654 EBro02_SQ004_J17_R root, 3 week, hyd... 216 6e-055
gb|BQ766319.1|BQ766319 EBro08_SQ005_K15_R root, 3 week, dro... 216 6e-055
gb|BQ767674.1|BQ767674 EBro08_SQ009_E15_R root, 3 week, dro... 216 6e-055
gb|BQ768272.1|BQ768272 EBro08_SQ011_B09_R root, 3 week, dro... 216 6e-055
gb|BQ768892.1|BQ768892 EBro08_SQ012_P20_R root, 3 week, dro... 216 6e-055
gb|BI777489.3|BI777489 EBro04_SQ001_G02_R root, 3 week, sal... 216 6e-055
gb|BU967665.1|BU967665 HB05A10r BC Hordeum vulgare subsp. v... 216 6e-055
gb|BU967669.1|BU967669 HB05A17r BC Hordeum vulgare subsp. v... 216 6e-055
gb|BU968937.1|BU968937 HB10A17r BC Hordeum vulgare subsp. v... 216 6e-055
gb|BU971048.1|BU971048 HB16H10r BC Hordeum vulgare subsp. v... 216 6e-055
gb|BU977074.1|BU977074 HA10M22r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU977075.1|BU977075 HA10M22u HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU979071.1|BU979071 HA15B07r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU979298.1|BU979298 HA15L11r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU979440.1|BU979440 HA16C18r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU980014.1|BU980014 HA18D12r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU981336.1|BU981336 HA23F17r HA Hordeum vulgare subsp. v... 216 6e-055
gb|BU984850.1|BU984850 HF05D20r HF Hordeum vulgare subsp. v... 216 6e-055
gb|CA021825.1|CA021825 HZ41D19r HZ Hordeum vulgare subsp. v... 216 6e-055
gb|CA029375.1|CA029375 HZ65A12r HZ Hordeum vulgare subsp. v... 216 6e-055
gb|CB875971.1|CB875971 HX09O06w HX Hordeum vulgare subsp. v... 216 6e-055
gb|CB878759.1|CB878759 HP09L10T HP Hordeum vulgare subsp. v... 216 6e-055
gb|CV054427.1|CV054427 BNEL10D4 Barley EST endosperm librar... 216 6e-055
gb|CV056022.1|CV056022 BNEL13A8 Barley EST endosperm librar... 216 6e-055
gb|CV056203.1|CV056203 BNEL15B10 Barley EST endosperm libra... 216 6e-055
gb|CV056825.1|CV056825 BNEL21a2 Barley EST endosperm librar... 216 6e-055
gb|CV057454.1|CV057454 BNEL28a3 Barley EST endosperm librar... 216 6e-055
gb|CV059680.1|CV059680 BNEL4G4 Barley EST endosperm library... 216 6e-055
gb|CV060164.1|CV060164 BNEL55b3 Barley EST endosperm librar... 216 6e-055
gb|CV060632.1|CV060632 BNEL5D3 Barley EST endosperm library... 216 6e-055
gb|CV064248.1|CV064248 BNEL99g3 Barley EST endosperm librar... 216 6e-055
gb|CK124618.1|CK124618 BES1824109m16 BES1824 Hordeum vulgar... 216 6e-055
gb|CB881731.1|CB881731 HM10L11w HM Hordeum vulgare subsp. v... 210 4e-053
gb|BE420561.1|BE420561 HWM000.B10 ITEC HWM Barley Leaf Libr... 208 1e-052
gb|BM444021.2|BM444021 EBem09_SQ002_M14_R embryo, 1 Day ger... 208 1e-052
gb|CD664027.1|CD664027 UCRHV18_07ca01_b1 Drought-stressed D... 208 1e-052
gb|CV059378.1|CV059378 BNEL47e1 Barley EST endosperm librar... 208 1e-052
gb|BM098603.2|BM098603 EBem08_SQ003_I19_R embryo, 40 DPA, n... 202 9e-051
gb|BM444382.1|BM444382 EBem09_SQ004_P20_R embryo, 1 Day ger... 200 3e-050
gb|BM443802.2|BM443802 EBem09_SQ001_I24_R embryo, 1 Day ger... 200 3e-050
gb|CA031416.1|CA031416 HX09O06r HX Hordeum vulgare subsp. v... 200 3e-050
gb|BQ761477.1|BQ761477 EBro07_SQ003_P09_R root, 3 week, red... 198 1e-049
gb|BQ761704.1|BQ761704 EBem10_SQ001_I14_R embryo, 2 Day ger... 194 2e-048
gb|BU986478.1|BU986478 HF11P18r HF Hordeum vulgare subsp. v... 194 2e-048
gb|BQ766173.1|BQ766173 EBro08_SQ005_B07_R root, 3 week, dro... 186 5e-046
gb|BE454718.2|BE454718 HVSMEh0095G16f Hordeum vulgare 5-45 ... 184 2e-045
gb|BU983093.1|BU983093 HA28I13r HA Hordeum vulgare subsp. v... 176 5e-043
gb|BG342866.2|BG342866 HVSMEg0001A13f Hordeum vulgare pre-a... 167 5e-040
gb|CV053563.1|CV053563 BNEL100f7 Barley EST endosperm libra... 165 2e-039
gb|CV056484.1|CV056484 BNEL18C2 Barley EST endosperm librar... 165 2e-039
gb|CV059135.1|CV059135 BNEL44g3 Barley EST endosperm librar... 165 2e-039
gb|CV059295.1|CV059295 BNEL46e8 Barley EST endosperm librar... 165 2e-039
gb|CV062309.1|CV062309 BNEL78f11 Barley EST endosperm libra... 157 5e-037
gb|BU995571.1|BU995571 HM10K12r HM Hordeum vulgare subsp. v... 145 2e-033
gb|BU982279.1|BU982279 HA26A19r HA Hordeum vulgare subsp. v... 131 3e-029
gb|BE216744.3|BE216744 HV_CEb0011G24f Hordeum vulgare seedl... 105 1e-021
gb|AJ434155.1|AJ434155 AJ434155 S00002 Hordeum vulgare subs... 101 2e-020
gb|BE216870.3|BE216870 HV_CEb0011O02f Hordeum vulgare seedl... 80 9e-014
gb|CV054996.1|CV054996 BNEL115f3 Barley EST endosperm libra... 80 9e-014
>gb|AV833011.1|AV833011 AV833011 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal8o06, mRNA
sequence
Length = 409
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 218 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 277
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 278 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 337
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 338 cgtgtggttcttcgacttggccatc 362
>gb|BG343883.1|BG343883 HVSMEg0007A05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007A05f, mRNA sequence
Length = 818
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 205 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 146
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 145 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 86
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 85 cgtgtggttcttcgacttggccatc 61
>gb|BE196470.2|BE196470 HVSMEh0092G06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092G06f, mRNA sequence
Length = 920
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 201 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 142
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 141 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 82
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 81 cgtgtggttcttcgacttggccatc 57
>gb|BE559303.2|BE559303 HV_CEb0023I09f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023I09f, mRNA sequence
Length = 529
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 193 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 134
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 133 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 74
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 73 cgtgtggttcttcgacttggccatc 49
>gb|BF631453.3|BF631453 HVSMEb0015P24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015P24f, mRNA sequence
Length = 432
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 203 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 144
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 143 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 84
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 83 cgtgtggttcttcgacttggccatc 59
>gb|BF259382.3|BF259382 HVSMEf0019H02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019H02f, mRNA sequence
Length = 379
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 151 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 92
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 91 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 32
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 31 cgtgtggttcttcgacttggccatc 7
>gb|BF267552.3|BF267552 HV_CEa0018E04f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018E04f, mRNA sequence
Length = 510
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 229 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 288
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 289 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 348
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 349 cgtgtggttcttcgacttggccatc 373
>gb|BE216876.3|BE216876 HV_CEb0011O14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011O14f, mRNA sequence
Length = 428
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 195 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 136
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 135 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 76
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 75 cgtgtggttcttcgacttggccatc 51
>gb|BM374273.1|BM374273 EBpi03_SQ003_C14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_C14 5', mRNA sequence
Length = 370
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 176 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 117
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 116 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 57
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 56 cgtgtggttcttcgacttggccatc 32
>gb|BM376577.1|BM376577 EBem05_SQ002_J23_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J23 5', mRNA sequence
Length = 400
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 202 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 143
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 142 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 83
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 82 cgtgtggttcttcgacttggccatc 58
>gb|BM444840.1|BM444840 EBem09_SQ006_K06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_K06 5', mRNA sequence
Length = 223
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 191 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 132
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 131 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 72
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 71 cgtgtggttcttcgacttggccatc 47
>gb|AJ434154.1|AJ434154 AJ434154 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200083D11F1, mRNA sequence
Length = 448
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 233 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 174
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 173 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 114
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 113 cgtgtggttcttcgacttggccatc 89
>gb|AJ435242.1|AJ435242 AJ435242 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051H12F1, mRNA sequence
Length = 517
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 212 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 153
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 152 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 93
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 92 cgtgtggttcttcgacttggccatc 68
>gb|AJ462582.1|AJ462582 AJ462582 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200086H06F1, mRNA sequence
Length = 180
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 164 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 105
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 104 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 45
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 44 cgtgtggttcttcgacttggccatc 20
>gb|BJ473902.1|BJ473902 BJ473902 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17k04 3', mRNA sequence
Length = 406
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 215 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 274
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 275 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 334
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 335 cgtgtggttcttcgacttggccatc 359
>gb|BQ459891.1|BQ459891 HA07M10r HA Hordeum vulgare subsp. vulgare cDNA clone HA07M10
5-PRIME, mRNA sequence
Length = 480
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 193 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 252
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 253 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 312
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 313 cgtgtggttcttcgacttggccatc 337
>gb|BQ460530.1|BQ460530 HA09D20r HA Hordeum vulgare subsp. vulgare cDNA clone HA09D20
5-PRIME, mRNA sequence
Length = 442
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 193 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 252
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 253 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 312
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 313 cgtgtggttcttcgacttggccatc 337
>gb|BQ464636.1|BQ464636 HF02N09r HF Hordeum vulgare subsp. vulgare cDNA clone HF02N09
5-PRIME, mRNA sequence
Length = 403
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 193 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 134
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 133 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 74
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 73 cgtgtggttcttcgacttggccatc 49
>gb|BQ469228.1|BQ469228 HM03M12r HM Hordeum vulgare subsp. vulgare cDNA clone HM03M12
5-PRIME, mRNA sequence
Length = 408
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 211 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 152
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 151 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 92
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 91 cgtgtggttcttcgacttggccatc 67
>gb|BQ470479.1|BQ470479 HX03B19r HX Hordeum vulgare subsp. vulgare cDNA clone HX03B19
5-PRIME, mRNA sequence
Length = 407
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 164 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 105
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 104 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 45
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 44 cgtgtggttcttcgacttggccatc 20
>gb|BQ661493.1|BQ661493 HM03M12u HM Hordeum vulgare subsp. vulgare cDNA clone HM03M12
3-PRIME, mRNA sequence
Length = 408
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 198 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 257
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 258 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 317
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 318 cgtgtggttcttcgacttggccatc 342
>gb|BQ665347.1|BQ665347 HX03B19u HX Hordeum vulgare subsp. vulgare cDNA clone HX03B19
3-PRIME, mRNA sequence
Length = 543
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 380 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 439
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 440 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 499
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 500 cgtgtggttcttcgacttggccatc 524
>gb|BM368930.2|BM368930 EBem07_SQ002_A20_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ002_A20 5', mRNA sequence
Length = 458
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 204 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 145
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 144 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 85
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 84 cgtgtggttcttcgacttggccatc 60
>gb|BM443906.2|BM443906 EBem09_SQ002_A02_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_A02 5', mRNA sequence
Length = 345
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 182 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 123
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 122 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 63
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 62 cgtgtggttcttcgacttggccatc 38
>gb|BM374387.2|BM374387 EBpi03_SQ003_H18_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_H18 5', mRNA sequence
Length = 569
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 188 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 129
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 128 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 69
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 68 cgtgtggttcttcgacttggccatc 44
>gb|BI778125.2|BI778125 EBro07_SQ002_E19_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_E19 5', mRNA sequence
Length = 421
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 191 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 132
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 131 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 72
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 71 cgtgtggttcttcgacttggccatc 47
>gb|BQ756841.1|BQ756841 EBem09_SQ003_O17_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_O17 5', mRNA sequence
Length = 404
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 196 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 137
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 136 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 77
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 76 cgtgtggttcttcgacttggccatc 52
>gb|BQ761328.1|BQ761328 EBro06_SQ001_C13_R root, 3 week, drought-stressed, cv Optic, EBro06
Hordeum vulgare subsp. vulgare cDNA clone
EBro06_SQ001_C13 5', mRNA sequence
Length = 228
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 199 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 140
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 139 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 80
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 79 cgtgtggttcttcgacttggccatc 55
>gb|BQ761736.1|BQ761736 EBem10_SQ001_O16_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_O16 5', mRNA sequence
Length = 320
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 187 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 128
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 127 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 68
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 67 cgtgtggttcttcgacttggccatc 43
>gb|BQ762654.1|BQ762654 EBro02_SQ004_J17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_J17 5', mRNA sequence
Length = 411
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 205 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 146
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 145 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 86
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 85 cgtgtggttcttcgacttggccatc 61
>gb|BQ766319.1|BQ766319 EBro08_SQ005_K15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_K15 5', mRNA sequence
Length = 399
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 201 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 142
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 141 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 82
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 81 cgtgtggttcttcgacttggccatc 57
>gb|BQ767674.1|BQ767674 EBro08_SQ009_E15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_E15 5', mRNA sequence
Length = 426
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 203 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 144
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 143 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 84
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 83 cgtgtggttcttcgacttggccatc 59
>gb|BQ768272.1|BQ768272 EBro08_SQ011_B09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B09 5', mRNA sequence
Length = 434
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 204 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 145
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 144 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 85
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 84 cgtgtggttcttcgacttggccatc 60
>gb|BQ768892.1|BQ768892 EBro08_SQ012_P20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_P20 5', mRNA sequence
Length = 419
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 193 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 134
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 133 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 74
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 73 cgtgtggttcttcgacttggccatc 49
>gb|BI777489.3|BI777489 EBro04_SQ001_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_G02 5', mRNA sequence
Length = 239
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 208 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 149
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 148 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 89
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 88 cgtgtggttcttcgacttggccatc 64
>gb|BU967665.1|BU967665 HB05A10r BC Hordeum vulgare subsp. vulgare cDNA clone HB05A10
5-PRIME, mRNA sequence
Length = 461
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 235 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 176
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 175 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 116
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 115 cgtgtggttcttcgacttggccatc 91
>gb|BU967669.1|BU967669 HB05A17r BC Hordeum vulgare subsp. vulgare cDNA clone HB05A17
5-PRIME, mRNA sequence
Length = 464
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 235 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 176
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 175 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 116
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 115 cgtgtggttcttcgacttggccatc 91
>gb|BU968937.1|BU968937 HB10A17r BC Hordeum vulgare subsp. vulgare cDNA clone HB10A17
5-PRIME, mRNA sequence
Length = 460
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 215 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 156
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 155 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 96
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 95 cgtgtggttcttcgacttggccatc 71
>gb|BU971048.1|BU971048 HB16H10r BC Hordeum vulgare subsp. vulgare cDNA clone HB16H10
5-PRIME, mRNA sequence
Length = 381
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 211 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 152
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 151 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 92
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 91 cgtgtggttcttcgacttggccatc 67
>gb|BU977074.1|BU977074 HA10M22r HA Hordeum vulgare subsp. vulgare cDNA clone HA10M22
5-PRIME, mRNA sequence
Length = 442
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 213 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 154
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 153 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 94
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 93 cgtgtggttcttcgacttggccatc 69
>gb|BU977075.1|BU977075 HA10M22u HA Hordeum vulgare subsp. vulgare cDNA clone HA10M22
3-PRIME, mRNA sequence
Length = 442
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 230 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 289
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 290 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 349
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 350 cgtgtggttcttcgacttggccatc 374
>gb|BU979071.1|BU979071 HA15B07r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B07
5-PRIME, mRNA sequence
Length = 442
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 213 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 154
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 153 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 94
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 93 cgtgtggttcttcgacttggccatc 69
>gb|BU979298.1|BU979298 HA15L11r HA Hordeum vulgare subsp. vulgare cDNA clone HA15L11
5-PRIME, mRNA sequence
Length = 425
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 215 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 156
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 155 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 96
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 95 cgtgtggttcttcgacttggccatc 71
>gb|BU979440.1|BU979440 HA16C18r HA Hordeum vulgare subsp. vulgare cDNA clone HA16C18
5-PRIME, mRNA sequence
Length = 505
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 218 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 159
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 158 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 99
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 98 cgtgtggttcttcgacttggccatc 74
>gb|BU980014.1|BU980014 HA18D12r HA Hordeum vulgare subsp. vulgare cDNA clone HA18D12
5-PRIME, mRNA sequence
Length = 396
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 199 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 140
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 139 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 80
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 79 cgtgtggttcttcgacttggccatc 55
>gb|BU981336.1|BU981336 HA23F17r HA Hordeum vulgare subsp. vulgare cDNA clone HA23F17
5-PRIME, mRNA sequence
Length = 515
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 213 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 154
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 153 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 94
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 93 cgtgtggttcttcgacttggccatc 69
>gb|BU984850.1|BU984850 HF05D20r HF Hordeum vulgare subsp. vulgare cDNA clone HF05D20
5-PRIME, mRNA sequence
Length = 424
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 218 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 159
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 158 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 99
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 98 cgtgtggttcttcgacttggccatc 74
>gb|CA021825.1|CA021825 HZ41D19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41D19
5-PRIME, mRNA sequence
Length = 424
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 211 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 152
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 151 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 92
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 91 cgtgtggttcttcgacttggccatc 67
>gb|CA029375.1|CA029375 HZ65A12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65A12
5-PRIME, mRNA sequence
Length = 429
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 219 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 160
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 159 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 100
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 99 cgtgtggttcttcgacttggccatc 75
>gb|CB875971.1|CB875971 HX09O06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09O06
3-PRIME, mRNA sequence
Length = 403
Score = 216 bits (109), Expect = 6e-055
Identities = 136/145 (93%)
Strand = Plus / Plus
Query: 282 cttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggaggtctg 341
|||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 211 cttcctcgagtacctcaggttcctcaggaacttcgggtccatccccttggtggaggcctg 270
Query: 342 gcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgc 401
||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||
Sbjct: 271 gcgctggcgcttgggcttcttgatgccgttcctgtgcgccttgtacgactggttgtgcgc 330
Query: 402 cgtgtggttcttcgacttggccatc 426
|||||||||||||||||||||||||
Sbjct: 331 cgtgtggttcttcgacttggccatc 355
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,151
Number of Sequences: 312970
Number of extensions: 59151
Number of successful extensions: 21703
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21607
Number of HSP's gapped (non-prelim): 92
length of query: 545
length of database: 175,134,539
effective HSP length: 19
effective length of query: 526
effective length of database: 169,188,109
effective search space: 88992945334
effective search space used: 88992945334
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)