BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV833011.1|AV833011 AV833011 K. Sato unpublished cDNA li... 236 6e-061
gb|BG343883.1|BG343883 HVSMEg0007A05f Hordeum vulgare pre-a... 236 6e-061
gb|BE196470.2|BE196470 HVSMEh0092G06f Hordeum vulgare 5-45 ... 236 6e-061
gb|BE559303.2|BE559303 HV_CEb0023I09f Hordeum vulgare seedl... 236 6e-061
gb|BF631453.3|BF631453 HVSMEb0015P24f Hordeum vulgare seedl... 236 6e-061
gb|BF259382.3|BF259382 HVSMEf0019H02f Hordeum vulgare seedl... 236 6e-061
gb|BF267552.3|BF267552 HV_CEa0018E04f Hordeum vulgare seedl... 236 6e-061
gb|BE216876.3|BE216876 HV_CEb0011O14f Hordeum vulgare seedl... 236 6e-061
gb|BM374273.1|BM374273 EBpi03_SQ003_C14_R pistil, 4 DPA, no... 236 6e-061
gb|BM376577.1|BM376577 EBem05_SQ002_J23_R embryo, 14 DPA, n... 236 6e-061
gb|BM444840.1|BM444840 EBem09_SQ006_K06_R embryo, 1 Day ger... 236 6e-061
gb|AJ434154.1|AJ434154 AJ434154 S00002 Hordeum vulgare subs... 236 6e-061
gb|AJ435242.1|AJ435242 AJ435242 S00002 Hordeum vulgare subs... 236 6e-061
gb|AJ462582.1|AJ462582 AJ462582 S00002 Hordeum vulgare subs... 236 6e-061
gb|BJ473902.1|BJ473902 BJ473902 K. Sato unpublished cDNA li... 236 6e-061
gb|BQ459891.1|BQ459891 HA07M10r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BQ460530.1|BQ460530 HA09D20r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BQ464636.1|BQ464636 HF02N09r HF Hordeum vulgare subsp. v... 236 6e-061
gb|BQ469228.1|BQ469228 HM03M12r HM Hordeum vulgare subsp. v... 236 6e-061
gb|BQ470479.1|BQ470479 HX03B19r HX Hordeum vulgare subsp. v... 236 6e-061
gb|BQ661493.1|BQ661493 HM03M12u HM Hordeum vulgare subsp. v... 236 6e-061
gb|BQ665347.1|BQ665347 HX03B19u HX Hordeum vulgare subsp. v... 236 6e-061
gb|BM368930.2|BM368930 EBem07_SQ002_A20_R embryo, 28 DPA, n... 236 6e-061
gb|BM443906.2|BM443906 EBem09_SQ002_A02_R embryo, 1 Day ger... 236 6e-061
gb|BM374387.2|BM374387 EBpi03_SQ003_H18_R pistil, 4 DPA, no... 236 6e-061
gb|BI778125.2|BI778125 EBro07_SQ002_E19_R root, 3 week, red... 236 6e-061
gb|BQ756841.1|BQ756841 EBem09_SQ003_O17_R embryo, 1 Day ger... 236 6e-061
gb|BQ761328.1|BQ761328 EBro06_SQ001_C13_R root, 3 week, dro... 236 6e-061
gb|BQ761736.1|BQ761736 EBem10_SQ001_O16_R embryo, 2 Day ger... 236 6e-061
gb|BQ762654.1|BQ762654 EBro02_SQ004_J17_R root, 3 week, hyd... 236 6e-061
gb|BQ766319.1|BQ766319 EBro08_SQ005_K15_R root, 3 week, dro... 236 6e-061
gb|BQ767674.1|BQ767674 EBro08_SQ009_E15_R root, 3 week, dro... 236 6e-061
gb|BQ768272.1|BQ768272 EBro08_SQ011_B09_R root, 3 week, dro... 236 6e-061
gb|BQ768892.1|BQ768892 EBro08_SQ012_P20_R root, 3 week, dro... 236 6e-061
gb|BI777489.3|BI777489 EBro04_SQ001_G02_R root, 3 week, sal... 236 6e-061
gb|BU967665.1|BU967665 HB05A10r BC Hordeum vulgare subsp. v... 236 6e-061
gb|BU967669.1|BU967669 HB05A17r BC Hordeum vulgare subsp. v... 236 6e-061
gb|BU968937.1|BU968937 HB10A17r BC Hordeum vulgare subsp. v... 236 6e-061
gb|BU971048.1|BU971048 HB16H10r BC Hordeum vulgare subsp. v... 236 6e-061
gb|BU977074.1|BU977074 HA10M22r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU977075.1|BU977075 HA10M22u HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU979071.1|BU979071 HA15B07r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU979298.1|BU979298 HA15L11r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU979440.1|BU979440 HA16C18r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU980014.1|BU980014 HA18D12r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU981336.1|BU981336 HA23F17r HA Hordeum vulgare subsp. v... 236 6e-061
gb|BU984850.1|BU984850 HF05D20r HF Hordeum vulgare subsp. v... 236 6e-061
gb|CA021825.1|CA021825 HZ41D19r HZ Hordeum vulgare subsp. v... 236 6e-061
gb|CA029375.1|CA029375 HZ65A12r HZ Hordeum vulgare subsp. v... 236 6e-061
gb|CB875971.1|CB875971 HX09O06w HX Hordeum vulgare subsp. v... 236 6e-061
gb|CB878759.1|CB878759 HP09L10T HP Hordeum vulgare subsp. v... 236 6e-061
gb|CV054427.1|CV054427 BNEL10D4 Barley EST endosperm librar... 236 6e-061
gb|CV056022.1|CV056022 BNEL13A8 Barley EST endosperm librar... 236 6e-061
gb|CV056203.1|CV056203 BNEL15B10 Barley EST endosperm libra... 236 6e-061
gb|CV056825.1|CV056825 BNEL21a2 Barley EST endosperm librar... 236 6e-061
gb|CV057454.1|CV057454 BNEL28a3 Barley EST endosperm librar... 236 6e-061
gb|CV059680.1|CV059680 BNEL4G4 Barley EST endosperm library... 236 6e-061
gb|CV060164.1|CV060164 BNEL55b3 Barley EST endosperm librar... 236 6e-061
gb|CV060632.1|CV060632 BNEL5D3 Barley EST endosperm library... 236 6e-061
gb|CV064248.1|CV064248 BNEL99g3 Barley EST endosperm librar... 236 6e-061
gb|CK124618.1|CK124618 BES1824109m16 BES1824 Hordeum vulgar... 236 6e-061
gb|BE420561.1|BE420561 HWM000.B10 ITEC HWM Barley Leaf Libr... 228 1e-058
gb|CD664027.1|CD664027 UCRHV18_07ca01_b1 Drought-stressed D... 228 1e-058
gb|CV059378.1|CV059378 BNEL47e1 Barley EST endosperm librar... 228 1e-058
gb|CB881731.1|CB881731 HM10L11w HM Hordeum vulgare subsp. v... 226 6e-058
gb|BM444021.2|BM444021 EBem09_SQ002_M14_R embryo, 1 Day ger... 224 2e-057
gb|BM098603.2|BM098603 EBem08_SQ003_I19_R embryo, 40 DPA, n... 222 9e-057
gb|BM444382.1|BM444382 EBem09_SQ004_P20_R embryo, 1 Day ger... 220 3e-056
gb|BM443802.2|BM443802 EBem09_SQ001_I24_R embryo, 1 Day ger... 220 3e-056
gb|CA031416.1|CA031416 HX09O06r HX Hordeum vulgare subsp. v... 220 3e-056
gb|BQ761477.1|BQ761477 EBro07_SQ003_P09_R root, 3 week, red... 218 1e-055
gb|BU986478.1|BU986478 HF11P18r HF Hordeum vulgare subsp. v... 214 2e-054
gb|BQ761704.1|BQ761704 EBem10_SQ001_I14_R embryo, 2 Day ger... 210 3e-053
gb|BE454718.2|BE454718 HVSMEh0095G16f Hordeum vulgare 5-45 ... 204 2e-051
gb|BQ766173.1|BQ766173 EBro08_SQ005_B07_R root, 3 week, dro... 202 8e-051
gb|BU983093.1|BU983093 HA28I13r HA Hordeum vulgare subsp. v... 196 5e-049
gb|CV053563.1|CV053563 BNEL100f7 Barley EST endosperm libra... 180 3e-044
gb|CV056484.1|CV056484 BNEL18C2 Barley EST endosperm librar... 180 3e-044
gb|CV059135.1|CV059135 BNEL44g3 Barley EST endosperm librar... 180 3e-044
gb|CV059295.1|CV059295 BNEL46e8 Barley EST endosperm librar... 180 3e-044
gb|CV062309.1|CV062309 BNEL78f11 Barley EST endosperm libra... 172 7e-042
gb|BU995571.1|BU995571 HM10K12r HM Hordeum vulgare subsp. v... 161 3e-038
gb|BU982279.1|BU982279 HA26A19r HA Hordeum vulgare subsp. v... 157 4e-037
gb|BG342866.2|BG342866 HVSMEg0001A13f Hordeum vulgare pre-a... 151 3e-035
gb|BE216744.3|BE216744 HV_CEb0011G24f Hordeum vulgare seedl... 98 3e-019
gb|CV054996.1|CV054996 BNEL115f3 Barley EST endosperm libra... 98 3e-019
gb|AJ434155.1|AJ434155 AJ434155 S00002 Hordeum vulgare subs... 94 5e-018
gb|BE216870.3|BE216870 HV_CEb0011O02f Hordeum vulgare seedl... 90 8e-017
gb|BG368299.2|BG368299 HVSMEi0017H23f Hordeum vulgare 20 DA... 38 0.27
gb|BQ764773.1|BQ764773 EBca01_SQ004_I20 _R carpel, pre-anth... 38 0.27
>gb|AV833011.1|AV833011 AV833011 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal8o06, mRNA
sequence
Length = 409
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 364 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 305
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 304 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 245
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 244 ctgaggaacctgaggtactcgaggaag 218
>gb|BG343883.1|BG343883 HVSMEg0007A05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007A05f, mRNA sequence
Length = 818
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 59 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 118
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 119 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 178
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 179 ctgaggaacctgaggtactcgaggaag 205
>gb|BE196470.2|BE196470 HVSMEh0092G06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092G06f, mRNA sequence
Length = 920
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 55 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 114
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 115 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 174
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 175 ctgaggaacctgaggtactcgaggaag 201
>gb|BE559303.2|BE559303 HV_CEb0023I09f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023I09f, mRNA sequence
Length = 529
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 106
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 107 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 166
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 167 ctgaggaacctgaggtactcgaggaag 193
>gb|BF631453.3|BF631453 HVSMEb0015P24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015P24f, mRNA sequence
Length = 432
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 57 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 116
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 117 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 176
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 177 ctgaggaacctgaggtactcgaggaag 203
>gb|BF259382.3|BF259382 HVSMEf0019H02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019H02f, mRNA sequence
Length = 379
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 64
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 65 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 124
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 125 ctgaggaacctgaggtactcgaggaag 151
>gb|BF267552.3|BF267552 HV_CEa0018E04f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018E04f, mRNA sequence
Length = 510
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 375 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 316
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 315 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 256
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 255 ctgaggaacctgaggtactcgaggaag 229
>gb|BE216876.3|BE216876 HV_CEb0011O14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011O14f, mRNA sequence
Length = 428
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 49 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 108
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 109 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 168
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 169 ctgaggaacctgaggtactcgaggaag 195
>gb|BM374273.1|BM374273 EBpi03_SQ003_C14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_C14 5', mRNA sequence
Length = 370
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 30 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 89
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 90 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 149
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 150 ctgaggaacctgaggtactcgaggaag 176
>gb|BM376577.1|BM376577 EBem05_SQ002_J23_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J23 5', mRNA sequence
Length = 400
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 56 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 115
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 116 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 175
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 176 ctgaggaacctgaggtactcgaggaag 202
>gb|BM444840.1|BM444840 EBem09_SQ006_K06_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_K06 5', mRNA sequence
Length = 223
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 45 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 104
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 105 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 164
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 165 ctgaggaacctgaggtactcgaggaag 191
>gb|AJ434154.1|AJ434154 AJ434154 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200083D11F1, mRNA sequence
Length = 448
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 87 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 146
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 147 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 206
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 207 ctgaggaacctgaggtactcgaggaag 233
>gb|AJ435242.1|AJ435242 AJ435242 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051H12F1, mRNA sequence
Length = 517
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 125
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 126 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 185
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 186 ctgaggaacctgaggtactcgaggaag 212
>gb|AJ462582.1|AJ462582 AJ462582 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200086H06F1, mRNA sequence
Length = 180
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 18 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 77
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 78 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 137
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 138 ctgaggaacctgaggtactcgaggaag 164
>gb|BJ473902.1|BJ473902 BJ473902 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17k04 3', mRNA sequence
Length = 406
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 302
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 301 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 242
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 241 ctgaggaacctgaggtactcgaggaag 215
>gb|BQ459891.1|BQ459891 HA07M10r HA Hordeum vulgare subsp. vulgare cDNA clone HA07M10
5-PRIME, mRNA sequence
Length = 480
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 339 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 280
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 279 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 220
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 219 ctgaggaacctgaggtactcgaggaag 193
>gb|BQ460530.1|BQ460530 HA09D20r HA Hordeum vulgare subsp. vulgare cDNA clone HA09D20
5-PRIME, mRNA sequence
Length = 442
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 339 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 280
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 279 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 220
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 219 ctgaggaacctgaggtactcgaggaag 193
>gb|BQ464636.1|BQ464636 HF02N09r HF Hordeum vulgare subsp. vulgare cDNA clone HF02N09
5-PRIME, mRNA sequence
Length = 403
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 106
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 107 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 166
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 167 ctgaggaacctgaggtactcgaggaag 193
>gb|BQ469228.1|BQ469228 HM03M12r HM Hordeum vulgare subsp. vulgare cDNA clone HM03M12
5-PRIME, mRNA sequence
Length = 408
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 124
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 125 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 184
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 185 ctgaggaacctgaggtactcgaggaag 211
>gb|BQ470479.1|BQ470479 HX03B19r HX Hordeum vulgare subsp. vulgare cDNA clone HX03B19
5-PRIME, mRNA sequence
Length = 407
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 18 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 77
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 78 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 137
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 138 ctgaggaacctgaggtactcgaggaag 164
>gb|BQ661493.1|BQ661493 HM03M12u HM Hordeum vulgare subsp. vulgare cDNA clone HM03M12
3-PRIME, mRNA sequence
Length = 408
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 344 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 285
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 284 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 225
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 224 ctgaggaacctgaggtactcgaggaag 198
>gb|BQ665347.1|BQ665347 HX03B19u HX Hordeum vulgare subsp. vulgare cDNA clone HX03B19
3-PRIME, mRNA sequence
Length = 543
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 526 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 467
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 466 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 407
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 406 ctgaggaacctgaggtactcgaggaag 380
>gb|BM368930.2|BM368930 EBem07_SQ002_A20_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ002_A20 5', mRNA sequence
Length = 458
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 58 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 117
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 118 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 177
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 178 ctgaggaacctgaggtactcgaggaag 204
>gb|BM443906.2|BM443906 EBem09_SQ002_A02_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_A02 5', mRNA sequence
Length = 345
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 95
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 96 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 155
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 156 ctgaggaacctgaggtactcgaggaag 182
>gb|BM374387.2|BM374387 EBpi03_SQ003_H18_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_H18 5', mRNA sequence
Length = 569
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 42 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 101
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 102 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 161
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 162 ctgaggaacctgaggtactcgaggaag 188
>gb|BI778125.2|BI778125 EBro07_SQ002_E19_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_E19 5', mRNA sequence
Length = 421
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 45 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 104
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 105 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 164
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 165 ctgaggaacctgaggtactcgaggaag 191
>gb|BQ756841.1|BQ756841 EBem09_SQ003_O17_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_O17 5', mRNA sequence
Length = 404
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 50 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 109
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 110 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 169
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 170 ctgaggaacctgaggtactcgaggaag 196
>gb|BQ761328.1|BQ761328 EBro06_SQ001_C13_R root, 3 week, drought-stressed, cv Optic, EBro06
Hordeum vulgare subsp. vulgare cDNA clone
EBro06_SQ001_C13 5', mRNA sequence
Length = 228
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 53 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 112
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 113 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 172
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 173 ctgaggaacctgaggtactcgaggaag 199
>gb|BQ761736.1|BQ761736 EBem10_SQ001_O16_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_O16 5', mRNA sequence
Length = 320
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 100
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 101 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 160
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 161 ctgaggaacctgaggtactcgaggaag 187
>gb|BQ762654.1|BQ762654 EBro02_SQ004_J17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_J17 5', mRNA sequence
Length = 411
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 59 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 118
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 119 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 178
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 179 ctgaggaacctgaggtactcgaggaag 205
>gb|BQ766319.1|BQ766319 EBro08_SQ005_K15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_K15 5', mRNA sequence
Length = 399
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 55 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 114
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 115 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 174
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 175 ctgaggaacctgaggtactcgaggaag 201
>gb|BQ767674.1|BQ767674 EBro08_SQ009_E15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_E15 5', mRNA sequence
Length = 426
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 57 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 116
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 117 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 176
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 177 ctgaggaacctgaggtactcgaggaag 203
>gb|BQ768272.1|BQ768272 EBro08_SQ011_B09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B09 5', mRNA sequence
Length = 434
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 58 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 117
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 118 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 177
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 178 ctgaggaacctgaggtactcgaggaag 204
>gb|BQ768892.1|BQ768892 EBro08_SQ012_P20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_P20 5', mRNA sequence
Length = 419
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 106
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 107 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 166
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 167 ctgaggaacctgaggtactcgaggaag 193
>gb|BI777489.3|BI777489 EBro04_SQ001_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_G02 5', mRNA sequence
Length = 239
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 62 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 121
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 122 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 181
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 182 ctgaggaacctgaggtactcgaggaag 208
>gb|BU967665.1|BU967665 HB05A10r BC Hordeum vulgare subsp. vulgare cDNA clone HB05A10
5-PRIME, mRNA sequence
Length = 461
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 89 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 148
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 149 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 208
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 209 ctgaggaacctgaggtactcgaggaag 235
>gb|BU967669.1|BU967669 HB05A17r BC Hordeum vulgare subsp. vulgare cDNA clone HB05A17
5-PRIME, mRNA sequence
Length = 464
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 89 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 148
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 149 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 208
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 209 ctgaggaacctgaggtactcgaggaag 235
>gb|BU968937.1|BU968937 HB10A17r BC Hordeum vulgare subsp. vulgare cDNA clone HB10A17
5-PRIME, mRNA sequence
Length = 460
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 69 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 128
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 129 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 188
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 189 ctgaggaacctgaggtactcgaggaag 215
>gb|BU971048.1|BU971048 HB16H10r BC Hordeum vulgare subsp. vulgare cDNA clone HB16H10
5-PRIME, mRNA sequence
Length = 381
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 124
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 125 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 184
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 185 ctgaggaacctgaggtactcgaggaag 211
>gb|BU977074.1|BU977074 HA10M22r HA Hordeum vulgare subsp. vulgare cDNA clone HA10M22
5-PRIME, mRNA sequence
Length = 442
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 67 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 126
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 127 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 186
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 187 ctgaggaacctgaggtactcgaggaag 213
>gb|BU977075.1|BU977075 HA10M22u HA Hordeum vulgare subsp. vulgare cDNA clone HA10M22
3-PRIME, mRNA sequence
Length = 442
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 376 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 317
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 316 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 257
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 256 ctgaggaacctgaggtactcgaggaag 230
>gb|BU979071.1|BU979071 HA15B07r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B07
5-PRIME, mRNA sequence
Length = 442
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 67 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 126
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 127 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 186
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 187 ctgaggaacctgaggtactcgaggaag 213
>gb|BU979298.1|BU979298 HA15L11r HA Hordeum vulgare subsp. vulgare cDNA clone HA15L11
5-PRIME, mRNA sequence
Length = 425
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 69 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 128
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 129 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 188
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 189 ctgaggaacctgaggtactcgaggaag 215
>gb|BU979440.1|BU979440 HA16C18r HA Hordeum vulgare subsp. vulgare cDNA clone HA16C18
5-PRIME, mRNA sequence
Length = 505
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 72 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 131
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 132 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 191
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 192 ctgaggaacctgaggtactcgaggaag 218
>gb|BU980014.1|BU980014 HA18D12r HA Hordeum vulgare subsp. vulgare cDNA clone HA18D12
5-PRIME, mRNA sequence
Length = 396
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 53 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 112
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 113 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 172
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 173 ctgaggaacctgaggtactcgaggaag 199
>gb|BU981336.1|BU981336 HA23F17r HA Hordeum vulgare subsp. vulgare cDNA clone HA23F17
5-PRIME, mRNA sequence
Length = 515
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 67 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 126
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 127 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 186
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 187 ctgaggaacctgaggtactcgaggaag 213
>gb|BU984850.1|BU984850 HF05D20r HF Hordeum vulgare subsp. vulgare cDNA clone HF05D20
5-PRIME, mRNA sequence
Length = 424
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 72 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 131
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 132 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 191
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 192 ctgaggaacctgaggtactcgaggaag 218
>gb|CA021825.1|CA021825 HZ41D19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41D19
5-PRIME, mRNA sequence
Length = 424
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 124
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 125 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 184
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 185 ctgaggaacctgaggtactcgaggaag 211
>gb|CA029375.1|CA029375 HZ65A12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65A12
5-PRIME, mRNA sequence
Length = 429
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Plus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 73 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 132
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 133 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 192
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 193 ctgaggaacctgaggtactcgaggaag 219
>gb|CB875971.1|CB875971 HX09O06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09O06
3-PRIME, mRNA sequence
Length = 403
Score = 236 bits (119), Expect = 6e-061
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 111 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 357 gagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaggaac 298
Query: 171 ggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttc 230
||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 297 ggcatcaagaagcccaagcgccagcgccaggcctccaccaaggggatggacccgaagttc 238
Query: 231 ctgaggaacctgaggtattcaaggaag 257
||||||||||||||||| || ||||||
Sbjct: 237 ctgaggaacctgaggtactcgaggaag 211
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,409
Number of Sequences: 312970
Number of extensions: 60409
Number of successful extensions: 20486
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20386
Number of HSP's gapped (non-prelim): 92
length of query: 514
length of database: 175,134,539
effective HSP length: 18
effective length of query: 496
effective length of database: 169,501,079
effective search space: 84072535184
effective search space used: 84072535184
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)