BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. v... 305 1e-081
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 293 4e-078
gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. v... 254 3e-066
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 210 5e-053
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 182 1e-044
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 178 2e-043
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 141 4e-032
gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. v... 133 9e-030
gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 ... 115 2e-024
gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA li... 76 2e-012
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 60 1e-007
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 60 1e-007
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 54 6e-006
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 54 6e-006
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 54 6e-006
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 54 6e-006
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 54 6e-006
gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. v... 54 6e-006
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 54 6e-006
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 54 6e-006
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 54 6e-006
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 54 6e-006
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 50 1e-004
gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-a... 46 0.002
gb|AV916500.1|AV916500 AV916500 K. Sato unpublished cDNA li... 44 0.006
gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. v... 44 0.006
gb|BU986804.1|BU986804 HF12P08r HF Hordeum vulgare subsp. v... 44 0.006
gb|BE422202.1|BE422202 HWM021cE.02r ITEC HWM Barley Leaf Li... 36 1.5
gb|BF630133.2|BF630133 HVSMEb0008A22f Hordeum vulgare seedl... 36 1.5
gb|AV913756.1|AV913756 AV913756 K. Sato unpublished cDNA li... 36 1.5
gb|BM816278.1|BM816278 HB03C08_T3.ab1 HB Hordeum vulgare su... 36 1.5
gb|BM816632.1|BM816632 HC110B11_T3.ab1 HC Hordeum vulgare s... 36 1.5
gb|BJ462760.1|BJ462760 BJ462760 K. Sato unpublished cDNA li... 36 1.5
gb|BJ464269.1|BJ464269 BJ464269 K. Sato unpublished cDNA li... 36 1.5
gb|BQ460786.1|BQ460786 HA05P09r HA Hordeum vulgare subsp. v... 36 1.5
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 36 1.5
gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. v... 36 1.5
gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. v... 36 1.5
gb|BU982140.1|BU982140 HA25K06r HA Hordeum vulgare subsp. v... 36 1.5
gb|CK123240.1|CK123240 BES1824102m12 BES1824 Hordeum vulgar... 36 1.5
gb|AV834293.1|AV834293 AV834293 K. Sato unpublished cDNA li... 34 6.0
gb|BE559319.1|BE559319 HV_CEb0023J22f Hordeum vulgare seedl... 34 6.0
gb|BG416835.1|BG416835 HVSMEk0014M04f Hordeum vulgare testa... 34 6.0
gb|BG417511.2|BG417511 HVSMEk0017N20f Hordeum vulgare testa... 34 6.0
gb|BU999301.1|BU999301 HI14B16r HI Hordeum vulgare subsp. v... 34 6.0
emb|AJ234607.1|HVU234607 Hordeum vulgare genomic DNA fragme... 34 6.0
gb|AF253472.1| Hordeum vulgare alcohol dehydrogenase (Adh1)... 34 6.0
emb|X12732.1|HVADH1A Barley alcohol dehydrogenase gene Adh1... 34 6.0
gb|AY785889.1| Hordeum vulgare subsp. vulgare cultivar More... 34 6.0
gb|AY785890.1| Hordeum vulgare subsp. vulgare cultivar Dick... 34 6.0
gb|AY785891.1| Hordeum vulgare subsp. vulgare cultivar Stri... 34 6.0
gb|AY785892.1| Hordeum vulgare subsp. vulgare cultivar 88Ab... 34 6.0
>gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF13F11
5-PRIME, mRNA sequence
Length = 664
Score = 305 bits (154), Expect = 1e-081
Identities = 379/454 (83%)
Strand = Plus / Plus
Query: 165 ttgcagcggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgc 224
|||| |||||||| ||||||||| | |||||||| ||||||| ||| |||||| ||||||
Sbjct: 206 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcaacagtgc 265
Query: 225 acacccaatctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatg 284
|||| || || ||| || || |||||| |||| |||||||| || ||||| ||||| |
Sbjct: 266 acactcagtcacccaaacaggagatgatggcctcattgtttaaaccacggggaactgaag 325
Query: 285 atgatggcctcatccgggaatcactgatcgacttctacactagctctggaaagcgaaaac 344
||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| || |
Sbjct: 326 atgatggcctcattcgggaatcacttattgacttctacactagttctgggaagcggaagc 385
Query: 345 cagaacacataattattttcagggatggagtcagtgaaagtcagtttacccaggtcatca 404
|||| || | || || ||||||||||||||||| ||||| |||||||||||||| || |
Sbjct: 386 cagaccaggttatcatcttcagggatggagtcagcgaaagccagtttacccaggtgataa 445
Query: 405 acattgagctggatcagatcatcgaggcatgtaagtttctggatgagaagtggtcaccca 464
|||| ||||| || ||||||||||||||||| |||| || || || |||||| ||||
Sbjct: 446 acatcgagcttgagcagatcatcgaggcatgcaagtgccttgacgacaagtgggagccca 505
Query: 465 agttcactgtgattgttgctcaaaagaaccaccacaccaagttctttcagacggcatcac 524
||||||| || ||||||||||| |||||||| ||||||| || || ||||| || |
Sbjct: 506 agttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaattcgc 565
Query: 525 cagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcg 584
|||| ||||||| |||||| || |||||||||| |||| |||||||| |||||||| |
Sbjct: 566 cagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactttg 625
Query: 585 acttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||||| |||||||||||||||||
Sbjct: 626 acttctacatgtgtgcgcatgctgggatgattgg 659
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 293 bits (148), Expect = 4e-078
Identities = 424/516 (82%)
Strand = Plus / Plus
Query: 200 atctctagatatagagcatcagtgcacacccaatctgccagactagaaatgatgtcctcg 259
||||||| ||| |||||| |||||||||| || || ||| || || |||||| ||||
Sbjct: 5 atctctaaatacagagcaacagtgcacactcagtcacccaaacaggagatgatggcctca 64
Query: 260 ttgtttaagccgcggggtactgatgatgatggcctcatccgggaatcactgatcgacttc 319
|||||||| || ||||| ||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 65 ttgtttaaaccacggggaactgaagatgatggcctcattcgcgaatcacttattgacttc 124
Query: 320 tacactagctctggaaagcgaaaaccagaacacataattattttcagggatggagtcagt 379
|||||||| ||||| ||||| || ||||| ||| | || || |||||||||||||||||
Sbjct: 125 tacactagttctgggaagcggaagccagaccacgttatcatcttcagggatggagtcagc 184
Query: 380 gaaagtcagtttacccaggtcatcaacattgagctggatcagatcatcgaggcatgtaag 439
|||| |||||||||||||| || ||||||||||| || ||||||||||||||||| |||
Sbjct: 185 taaagccagtttacccaggtgataaacattgagcttgagcagatcatcgaggcatgcaag 244
Query: 440 tttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccac 499
| || || || |||||| ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 245 tgccttgacgacaagtgggagcccaagttcacagtcattgttgctcagaagaaccatcac 304
Query: 500 accaagttctttcagacggcatcaccagacaatgttcttcctggaactgtggtggatagt 559
|||| || || ||||| || ||||| ||||||| |||||| || ||||||||||
Sbjct: 305 accagatttttccagacaaattcgccagaaaatgttcctcctggtacggtggtggataaa 364
Query: 560 aaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgga 619
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 365 caagtgtgccatcccaagaactttgacttctacatgtgtgcgcatgctgggatgattggc 424
Query: 620 acaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgag 679
|| | ||||| || || || ||||||||||| || ||||| || ||| || ||||||
Sbjct: 425 acgtcgaggccaacgcattaccatgttctgcatgatgagattggcttcagcgcggacgag 484
Query: 680 atgcaggagtttgttcattcgctatcttacgtgtac 715
| ||||||||||| || ||||| ||||| ||||||
Sbjct: 485 ctccaggagtttgtgcactcgctttcttatgtgtac 520
>gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB12C12
5-PRIME, mRNA sequence
Length = 471
Score = 254 bits (128), Expect = 3e-066
Identities = 356/432 (82%)
Strand = Plus / Plus
Query: 284 gatgatggcctcatccgggaatcactgatcgacttctacactagctctggaaagcgaaaa 343
||||||||||| || ||||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct: 11 gatgatggcctaattcgggaatcacttattgacttctacactagttctgggaagcggaag 70
Query: 344 ccagaacacataattattttcagggatggagtcagtgaaagtcagtttacccaggtcatc 403
||||| || | || || ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 71 ccagaccaggttatcatcttcagggatggagtcagcgaaagccagtttacccaggtgata 130
Query: 404 aacattgagctggatcagatcatcgaggcatgtaagtttctggatgagaagtggtcaccc 463
||||| ||||| || ||||||||||||||||| |||| || || || |||||| |||
Sbjct: 131 aacatcgagcttgagcagatcatcgaggcatgcaagtgccttgacgacaagtgggagccc 190
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacaccaagttctttcagacggcatca 523
|||||||| || ||||||||||| |||||||| ||||||| || || ||||| ||
Sbjct: 191 aagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaattcg 250
Query: 524 ccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttc 583
||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||||
Sbjct: 251 ccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaacttt 310
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| ||||||||||||||||| || | ||||| || || || |||
Sbjct: 311 gacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattaccat 370
Query: 644 gttctgcacgacgagataggtttctctgcagacgagatgcaggagtttgttcattcgcta 703
|||||||| || ||||| || ||| || |||||| | ||||||||||| || |||||
Sbjct: 371 gttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgctt 430
Query: 704 tcttacgtgtac 715
||||| ||||||
Sbjct: 431 tcttatgtgtac 442
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 210 bits (106), Expect = 5e-053
Identities = 292/354 (82%)
Strand = Plus / Plus
Query: 362 ttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatcag 421
||||||||||||||||| ||||| |||||||||||||| || ||||| ||||| || |||
Sbjct: 4 ttcagggatggagtcagcgaaagccagtttacccaggtgataaacatcgagcttgagcag 63
Query: 422 atcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgtt 481
|||||||||||||| |||| || || || |||||| ||||||||||| || ||||||
Sbjct: 64 atcatcgaggcatgcaagtgccttgacgacaagtgggagcccaagttcacagtcattgtt 123
Query: 482 gctcaaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttcttcct 541
||||| |||||||| ||||||| || || ||||| || ||||| ||||||| ||||
Sbjct: 124 gctcagaagaaccatcacaccagatttttccagacaaattcgccagaaaatgttcctcct 183
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||
Sbjct: 184 ggtacggtggtggataaacaagtgtgccatcccaagaactttgacttctacatgtgtgcg 243
Query: 602 catgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagata 661
||||||||||||||||| || | ||||| || || || ||||||||||| || |||||
Sbjct: 244 catgctgggatgattggcacgtcgaggccaacgcattaccatgttctgcatgatgagatt 303
Query: 662 ggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|| ||| || |||||| | ||||||||||| || ||||| ||||| ||||||
Sbjct: 304 ggcttcagcgcggacgagctccaggagtttgtccactcgctttcttatgtgtac 357
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 182 bits (92), Expect = 1e-044
Identities = 275/336 (81%)
Strand = Plus / Plus
Query: 380 gaaagtcagtttacccaggtcatcaacattgagctggatcagatcatcgaggcatgtaag 439
||||| |||||||||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 13 gaaagccagtttacccaggtgataaacatcgagcttgagcagatcatcgaggcatgcaag 72
Query: 440 tttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccac 499
| || || || |||||| ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 73 tgccttgacgacaagtgggagcccaagttcacagtcattgttgctcagaagaaccatcac 132
Query: 500 accaagttctttcagacggcatcaccagacaatgttcttcctggaactgtggtggatagt 559
|||| || || ||||| || ||||| ||||||| |||||| || ||||||||||
Sbjct: 133 accagatttttccagacaaattcgccagaaaatgttcctcctggtacggtggtggataaa 192
Query: 560 aaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgga 619
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 193 caagtgtgccatcccaagaactttgacttctacatgtgtgcgcatgctgggatgattggc 252
Query: 620 acaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgag 679
|| | ||||| || || || ||||||||||| || ||||| || ||| || ||||||
Sbjct: 253 acgtcgaggccaacgcattaccatgttctgcatgatgagattggcttcagcgcggacgag 312
Query: 680 atgcaggagtttgttcattcgctatcttacgtgtac 715
| ||||||||||| || ||||| ||||| ||||||
Sbjct: 313 ctccaggagtttgtccactcgctttcttatgtgtac 348
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 178 bits (90), Expect = 2e-043
Identities = 270/330 (81%)
Strand = Plus / Plus
Query: 386 cagtttacccaggtcatcaacattgagctggatcagatcatcgaggcatgtaagtttctg 445
|||||||||||||| || ||||| ||||| || ||||||||||||||||| |||| ||
Sbjct: 4 cagtttacccaggtgataaacatcgagcttgagcagatcatcgaggcatgcaagtgcctt 63
Query: 446 gatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaag 505
|| || |||||| ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct: 64 gacgacaagtgggagcccaagttcacagtcattgttgctcagaagaaccatcacaccaga 123
Query: 506 ttctttcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtt 565
|| || ||||| || ||||| ||||||| |||||| || |||||||||| ||||
Sbjct: 124 tttttccagacaaattcgccagaaaatgttcctcctggtacggtggtggataaacaagtg 183
Query: 566 tgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaaca 625
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct: 184 tgccatcccaagaactttgacttctacatgtgtgcgcatgctgggatgattggcacgtcg 243
Query: 626 aggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgagatgcag 685
||||| || || || ||||||||||| || ||||| || ||| || |||||| | |||
Sbjct: 244 aggccaacgcattaccatgttctgcatgatgagattggcttcagcgcggacgagctccag 303
Query: 686 gagtttgttcattcgctatcttacgtgtac 715
|||||||| || ||||| ||||| ||||||
Sbjct: 304 gagtttgtccactcgctttcttatgtgtac 333
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 141 bits (71), Expect = 4e-032
Identities = 236/291 (81%)
Strand = Plus / Plus
Query: 425 atcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgct 484
||||||||||| |||| || || || |||||| ||||||||||| || |||||||||
Sbjct: 11 atcgaggcatgcaagtgccttgacgacaagtgggagcccaagttcacagtcattgttgct 70
Query: 485 caaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttcttcctgga 544
|| |||||||| ||||||| || || ||||| || ||||| ||||||| ||||||
Sbjct: 71 cagaagaaccatcacaccagatttttccagacaaattcgccagaaaatgttcctcctggt 130
Query: 545 actgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgcacat 604
|| |||||||||| |||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct: 131 acggtggtggataaacaagtgtgccatcccaagaactttgacttctacatgtgtgcgcat 190
Query: 605 gctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagataggt 664
|||||||||||||| || | ||||| || || || ||||||||||| || ||||| ||
Sbjct: 191 gctgggatgattggcacgtcgaggccaacgcattaccatgttctgcatgatgagattggc 250
Query: 665 ttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
||| || |||||| | ||||||||||| || ||||| ||||| ||||||
Sbjct: 251 ttcagcgcggacgagctccaggagtttgtccactcgctttcttatgtgtac 301
>gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
5-PRIME, mRNA sequence
Length = 556
Score = 133 bits (67), Expect = 9e-030
Identities = 148/175 (84%)
Strand = Plus / Plus
Query: 165 ttgcagcggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgc 224
|||| |||||||| ||||||||| | |||||||| ||||||| ||| |||||| ||||||
Sbjct: 381 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcaacagtgc 440
Query: 225 acacccaatctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatg 284
|||| || || ||| || || |||||| |||| |||||||| || ||||| ||||| |
Sbjct: 441 acactcagtcacccaaacaggagatgatggcctcattgtttaaaccacggggaactgaag 500
Query: 285 atgatggcctcatccgggaatcactgatcgacttctacactagctctggaaagcg 339
||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||
Sbjct: 501 atgatggcctcattcgggaatcacttattgacttctacactagttctgggaagcg 555
>gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086A12f, mRNA sequence
Length = 841
Score = 115 bits (58), Expect = 2e-024
Identities = 137/162 (84%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 165 ttgcagcggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgc 224
|||| |||||||| ||||||||| | |||||||| ||||||| ||| |||||||||||||
Sbjct: 373 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcatcagtgc 432
Query: 225 acacccaatctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatg 284
|||| || || ||| || || |||||| |||| |||||||| || ||||| ||||| |
Sbjct: 433 acactcagtcacccaaacacgagatgatggcctcattgtttaa-ccccggggaactgaag 491
Query: 285 atgatggcctcatccgggaatcactgatcgacttctacacta 326
||||||||||||| ||||||||||| || ||||||| |||||
Sbjct: 492 atgatggcctcattcgggaatcacttattgacttctccacta 533
>gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42F08
5-PRIME, mRNA sequence
Length = 520
Score = 91.7 bits (46), Expect = 3e-017
Identities = 279/354 (78%), Gaps = 2/354 (0%)
Strand = Plus / Plus
Query: 278 actgatgatgatggcctcatccgggaatcactgatcgacttctacactagctctggaaag 337
||||| ||||||||||| | ||||| | || || ||||||||||| || |||||||||
Sbjct: 136 actgaagatgatggccttgttcgggagtgtctcattgacttctacaccagttctggaaag 195
Query: 338 cgaaaaccagaacacataattattttcagggatggagtcagtgaaagtcagtttacccag 397
|||||||||| || || || || ||||||||||| || || || || ||||||| |||
Sbjct: 196 agaaaaccagatcagatcatcatcttcagggatggtgttagcgagagccagtttaatcag 255
Query: 398 gtcatcaacattgagctggatcagatcatcgaggcatgtaagtttctggatgagaagtgg 457
|| | ||||| || | ||||| || || ||||| || ||||| ||||||| || |||
Sbjct: 256 gtgctgaacatcgaattagatcaaattattgaggcctgcaagttcttggatgaaaattgg 315
Query: 458 tcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttctttca-gac 516
||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||| | |
Sbjct: 316 aaccccaagttcacactgattgttgctcagaagaatcaccacacaaagtt-tttcatgcc 374
Query: 517 ggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaa 576
| ||| || |||||||| | |||||| ||||| || |||| | || |||||||| |
Sbjct: 375 tggatctcctgacaatgtccctcctggcactgttgttgataatgctgtctgccatccaag 434
Query: 577 gaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||| | ||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 435 gaattatgacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 488
>gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 5', mRNA sequence
Length = 593
Score = 75.8 bits (38), Expect = 2e-012
Identities = 182/230 (79%)
Strand = Plus / Plus
Query: 278 actgatgatgatggcctcatccgggaatcactgatcgacttctacactagctctggaaag 337
||||| ||||||||||| | ||||| | || || ||||||||||| || |||||||||
Sbjct: 301 actgaagatgatggccttgttcgggagtgtctcattgacttctacaccagttctggaaag 360
Query: 338 cgaaaaccagaacacataattattttcagggatggagtcagtgaaagtcagtttacccag 397
|||||||||| || || || || ||||||||||| || || || || ||||||| |||
Sbjct: 361 agaaaaccagatcagatcatcatcttcagggatggtgttagcgagagccagtttaatcag 420
Query: 398 gtcatcaacattgagctggatcagatcatcgaggcatgtaagtttctggatgagaagtgg 457
|| | ||||| || | ||||| || || ||||| || ||||| ||||||| || |||
Sbjct: 421 gtgctgaacatcgaattagatcaaattattgaggcctgcaagttcttggatgaaaattgg 480
Query: 458 tcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagtt 507
||||||||||| ||||||||||||| ||||| |||||||| |||||
Sbjct: 481 aaccccaagttcacactgattgttgctcagaagaatcaccacacaaagtt 530
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
|||||||||||||||| |||||||| |||||||
Sbjct: 41 tgaagatcaatgcaaaacttggtggaatgaactc 74
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 60.0 bits (30), Expect = 1e-007
Identities = 128/158 (81%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 474 tgattgttgctcaaaagaaccaccacaccaagttctttca-gacggcatcaccagacaat 532
||||||||||||| ||||| |||||||| ||||| ||||| | | | ||| || ||||||
Sbjct: 44 tgattgttgctcagaagaatcaccacacaaagtt-tttcatgcctggatctcctgacaat 102
Query: 533 gttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctac 592
|| | |||||| ||||| || |||| | || |||||||| | ||| | ||||| |||
Sbjct: 103 gtccctcctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttac 162
Query: 593 atgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| || |||||||| |||||||| |||||||||||
Sbjct: 163 atgtgcgctcatgctggaatgattgggacaacaaggcc 200
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 60.0 bits (30), Expect = 1e-007
Identities = 128/158 (81%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 474 tgattgttgctcaaaagaaccaccacaccaagttctttca-gacggcatcaccagacaat 532
||||||||||||| ||||| |||||||| ||||| ||||| | | | ||| || ||||||
Sbjct: 636 tgattgttgctcagaagaatcaccacacaaagtt-tttcatgcctggatctcctgacaat 578
Query: 533 gttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctac 592
|| | |||||| ||||| || |||| | || |||||||| | ||| | ||||| |||
Sbjct: 577 gtccctcctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttac 518
Query: 593 atgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| || |||||||| |||||||| |||||||||||
Sbjct: 517 atgtgcgctcatgctggaatgattgggacaacaaggcc 480
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 607 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 561
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 625 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 579
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 583 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 537
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 572 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 526
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 117 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 163
>gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B24
5-PRIME, mRNA sequence
Length = 455
Score = 54.0 bits (27), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 278 actgatgatgatggcctcatccgggaatcactgatcgacttctacactagctctggaaag 337
||||| ||||||||||| | ||||| | || || ||||||||||| || |||||||||
Sbjct: 258 actgaagatgatggccttgttcgggagtgtctcattgacttctacaccagttctggaaag 317
Query: 338 cgaaaaccagaacacataattattttcagggatgg 372
|||||||||| || || || || |||||||||||
Sbjct: 318 agaaaaccagatcagatcatcatcttcagggatgg 352
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 92 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 138
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 569 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 523
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 617 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 571
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 54.0 bits (27), Expect = 6e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 569 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 523
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 590 tacatgtgtgcacatgctgggatgattggaacaacaaggcc 630
|||||||| || |||||||| |||||||| |||||||||||
Sbjct: 607 tacatgtgcgctcatgctggaatgattgggacaacaaggcc 567
>gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G18f, mRNA sequence
Length = 1070
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 314 gacttctacactagctctggaaagcgaaaaccagaacacataattattttcagggatgg 372
||||||||||| || ||||||||| |||||||||| || | || || |||||||||||
Sbjct: 469 gacttctacaccagttctggaaagagaaaaccagatcagaatatcatcttcagggatgg 527
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 278 actgatgatgatggcctcatccgggaatcactgatcgacttctacactagctctggaaag 337
||||| ||||||||||| | ||||| | || || ||||||||||| || |||||||||
Sbjct: 433 actgaagatgatggccttgttcgggagtgtctcattgacttctacaccagttctggaaag 492
Query: 338 cgaaaaccaga 348
||||||||||
Sbjct: 493 agaaaaccaga 503
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
|||||||||||||||| |||||||| |||||||
Sbjct: 173 tgaagatcaatgcaaaacttggtggaatgaactc 206
Score = 40.1 bits (20), Expect = 0.097
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 461 cccaagttcactgtgattgttgctcaaaagaa 492
||||||||||| ||||||||||||| |||||
Sbjct: 616 cccaagttcacactgattgttgctcagaagaa 647
>gb|AV916500.1|AV916500 AV916500 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 5', mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
|||||||||||||||| |||||||| |||||||
Sbjct: 454 tgaagatcaatgcaaaacttggtggaatgaactc 487
>gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB19G05
5-PRIME, mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
|||||||||||||||| |||||||| |||||||
Sbjct: 329 tgaagatcaatgcaaaacttggtggaatgaactc 362
>gb|BU986804.1|BU986804 HF12P08r HF Hordeum vulgare subsp. vulgare cDNA clone HF12P08
5-PRIME, mRNA sequence
Length = 503
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
|||||||||||||||| |||||||| |||||||
Sbjct: 310 tgaagatcaatgcaaaacttggtggaatgaactc 343
>gb|BE422202.1|BE422202 HWM021cE.02r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM021cE.02, mRNA sequence
Length = 1161
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 344 atagagcatcagtgcaca 327
>gb|BF630133.2|BF630133 HVSMEb0008A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008A22f, mRNA sequence
Length = 499
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 170 atagagcatcagtgcaca 153
>gb|AV913756.1|AV913756 AV913756 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23c23 5', mRNA sequence
Length = 708
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 630 atagagcatcagtgcaca 613
>gb|BM816278.1|BM816278 HB03C08_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB03C08_T3.ab1 similar to LEAF-SPECIFIC THIONIN
PRECURSOR (CLONES PKG1348, PKG1940, PKG2872 AND DG3)
gi|167102|gb|AAA32976.1| (M19046) precursor thionin
[Hordeum vulgare], mRNA sequence
Length = 795
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 110 atcatcttaggtatggat 127
||||||||||||||||||
Sbjct: 550 atcatcttaggtatggat 567
>gb|BM816632.1|BM816632 HC110B11_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110B11_T3.ab1 similar to Arginine
decarboxylase,Arginine 2-monooxygenase,Glycine
dehydrogenase (decarboxylating),, mRNA sequence
Length = 856
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 304 atcactgatcgacttcta 321
||||||||||||||||||
Sbjct: 687 atcactgatcgacttcta 670
>gb|BJ462760.1|BJ462760 BJ462760 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24e11 5', mRNA sequence
Length = 573
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 384 atagagcatcagtgcaca 367
>gb|BJ464269.1|BJ464269 BJ464269 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33j10 5', mRNA sequence
Length = 452
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 49 atagagcatcagtgcaca 32
>gb|BQ460786.1|BQ460786 HA05P09r HA Hordeum vulgare subsp. vulgare cDNA clone HA05P09
5-PRIME, mRNA sequence
Length = 629
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 48 atagagcatcagtgcaca 31
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 36.2 bits (18), Expect = 1.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 624 caaggcccacccactatcatgt 645
||||||||||||| ||||||||
Sbjct: 233 caaggcccacccattatcatgt 254
Score = 36.2 bits (18), Expect = 1.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 480 ttgctcaaaagaaccaccacac 501
||||||||||||| ||||||||
Sbjct: 89 ttgctcaaaagaatcaccacac 110
>gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
3-PRIME, mRNA sequence
Length = 623
Score = 36.2 bits (18), Expect = 1.5
Identities = 36/42 (85%)
Strand = Plus / Minus
Query: 674 gacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||||| | ||||||||||| || ||||| ||||| ||||||
Sbjct: 613 gacgagctccaggagtttgtccactcgctttcttatgtgtac 572
>gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. vulgare cDNA clone HX01H11
3-PRIME, mRNA sequence
Length = 669
Score = 36.2 bits (18), Expect = 1.5
Identities = 36/42 (85%)
Strand = Plus / Minus
Query: 674 gacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||||| | ||||||||||| || ||||| ||||| ||||||
Sbjct: 644 gacgagctccaggagtttgtccactcgctttcttatgtgtac 603
>gb|BU982140.1|BU982140 HA25K06r HA Hordeum vulgare subsp. vulgare cDNA clone HA25K06
5-PRIME, mRNA sequence
Length = 614
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 434 atagagcatcagtgcaca 417
>gb|CK123240.1|CK123240 BES1824102m12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M122 5-PRIME, mRNA sequence
Length = 776
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 274 atagagcatcagtgcaca 257
>gb|AV834293.1|AV834293 AV834293 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags9n17, mRNA sequence
Length = 687
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 597 gtgcacatgctgggatg 613
|||||||||||||||||
Sbjct: 121 gtgcacatgctgggatg 137
>gb|BE559319.1|BE559319 HV_CEb0023J22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023J22f, mRNA sequence
Length = 835
Score = 34.2 bits (17), Expect = 6.0
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 518 gcatcaccagacaatgttctt 538
|||||||||||||||| ||||
Sbjct: 363 gcatcaccagacaatgctctt 383
>gb|BG416835.1|BG416835 HVSMEk0014M04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014M04f, mRNA sequence
Length = 480
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 483 ctcaaaagaaccaccac 499
|||||||||||||||||
Sbjct: 4 ctcaaaagaaccaccac 20
>gb|BG417511.2|BG417511 HVSMEk0017N20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017N20f, mRNA sequence
Length = 865
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 279 ctgatgatgatggcctc 295
|||||||||||||||||
Sbjct: 751 ctgatgatgatggcctc 767
>gb|BU999301.1|BU999301 HI14B16r HI Hordeum vulgare subsp. vulgare cDNA clone HI14B16
5-PRIME, mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 465 agttcactgtgattgtt 481
|||||||||||||||||
Sbjct: 94 agttcactgtgattgtt 110
>emb|AJ234607.1|HVU234607 Hordeum vulgare genomic DNA fragment; clone MWG0876.rev
Length = 265
Score = 34.2 bits (17), Expect = 6.0
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
||||||| ||||| |||||||||||
Sbjct: 146 tgaagatgaatgctaagcttggtgg 170
>gb|AF253472.1| Hordeum vulgare alcohol dehydrogenase (Adh1) gene, complete cds
Length = 4309
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 193 gcctcttatctctagat 209
|||||||||||||||||
Sbjct: 3439 gcctcttatctctagat 3455
>emb|X12732.1|HVADH1A Barley alcohol dehydrogenase gene Adh1 (partial) (EC 1.1.1.1)
Length = 1506
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 193 gcctcttatctctagat 209
|||||||||||||||||
Sbjct: 1409 gcctcttatctctagat 1425
>gb|AY785889.1| Hordeum vulgare subsp. vulgare cultivar Morex HvCBF11 (CBF11) gene,
complete cds
Length = 749
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 135 atggtcatccaggacaa 151
|||||||||||||||||
Sbjct: 729 atggtcatccaggacaa 745
>gb|AY785890.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF11 (CBF11)
gene, complete cds
Length = 749
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 135 atggtcatccaggacaa 151
|||||||||||||||||
Sbjct: 729 atggtcatccaggacaa 745
>gb|AY785891.1| Hordeum vulgare subsp. vulgare cultivar Strider HvCBF11 (CBF11)
gene, complete cds
Length = 749
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 135 atggtcatccaggacaa 151
|||||||||||||||||
Sbjct: 729 atggtcatccaggacaa 745
>gb|AY785892.1| Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF11 (CBF11)
gene, complete cds
Length = 778
Score = 34.2 bits (17), Expect = 6.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 135 atggtcatccaggacaa 151
|||||||||||||||||
Sbjct: 729 atggtcatccaggacaa 745
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,191
Number of Sequences: 312970
Number of extensions: 70191
Number of successful extensions: 21604
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21496
Number of HSP's gapped (non-prelim): 96
length of query: 715
length of database: 175,134,539
effective HSP length: 19
effective length of query: 696
effective length of database: 169,188,109
effective search space: 117754923864
effective search space used: 117754923864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)