BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ452117.1|BJ452117 BJ452117 K. Sato unpublished cDNA li... 498 e-139
gb|BU987740.1|BU987740 HF15K04r HF Hordeum vulgare subsp. v... 492 e-137
gb|CV063418.1|CV063418 BNEL8B1 Barley EST endosperm library... 486 e-136
gb|BU999438.1|BU999438 HI14I08r HI Hordeum vulgare subsp. v... 482 e-134
gb|CB875665.1|CB875665 HX08P22w HX Hordeum vulgare subsp. v... 452 e-125
gb|BJ459673.1|BJ459673 BJ459673 K. Sato unpublished cDNA li... 434 e-120
gb|AV921789.1|AV921789 AV921789 K. Sato unpublished cDNA li... 398 e-109
gb|CA021101.1|CA021101 HZ39B21r HZ Hordeum vulgare subsp. v... 392 e-107
gb|AV912123.1|AV912123 AV912123 K. Sato unpublished cDNA li... 391 e-107
gb|AV912409.1|AV912409 AV912409 K. Sato unpublished cDNA li... 391 e-107
gb|AV917048.1|AV917048 AV917048 K. Sato unpublished cDNA li... 389 e-106
gb|AV918303.1|AV918303 AV918303 K. Sato unpublished cDNA li... 389 e-106
gb|AV919781.1|AV919781 AV919781 K. Sato unpublished cDNA li... 389 e-106
gb|AV910025.1|AV910025 AV910025 K. Sato unpublished cDNA li... 387 e-106
gb|AV914689.1|AV914689 AV914689 K. Sato unpublished cDNA li... 385 e-105
gb|BU984047.1|BU984047 HA31N09r HA Hordeum vulgare subsp. v... 383 e-104
gb|AV910248.1|AV910248 AV910248 K. Sato unpublished cDNA li... 371 e-101
gb|CB858496.1|CB858496 HI07E04w HI Hordeum vulgare subsp. v... 371 e-101
gb|CV058984.1|CV058984 BNEL43b2 Barley EST endosperm librar... 367 e-100
gb|AV919937.1|AV919937 AV919937 K. Sato unpublished cDNA li... 272 3e-071
gb|BG415601.1|BG415601 HVSMEk0007C11f Hordeum vulgare testa... 268 4e-070
gb|CA032662.1|CA032662 HX13N04r HX Hordeum vulgare subsp. v... 236 1e-060
gb|AL511118.1|AL511118 AL511118 Hordeum vulgare Barke devel... 232 2e-059
gb|BI777078.2|BI777078 EBpi03_SQ001_N08_R pistil, 4 DPA, no... 228 4e-058
gb|AL507857.1|AL507857 AL507857 Hordeum vulgare Barke devel... 222 2e-056
gb|BG343577.2|BG343577 HVSMEg0006H01f Hordeum vulgare pre-a... 204 5e-051
gb|BU997209.1|BU997209 HI07E04r HI Hordeum vulgare subsp. v... 204 5e-051
gb|BI950887.1|BI950887 HVSMEl0023I15f Hordeum vulgare spike... 202 2e-050
gb|AV916355.1|AV916355 AV916355 K. Sato unpublished cDNA li... 202 2e-050
gb|AL509299.1|AL509299 AL509299 Hordeum vulgare Barke devel... 186 1e-045
gb|BF261152.2|BF261152 HVSMEf0023O08f Hordeum vulgare seedl... 182 2e-044
gb|BU982643.1|BU982643 HA27C18r HA Hordeum vulgare subsp. v... 174 5e-042
gb|BG418692.2|BG418692 HVSMEk0024A01f Hordeum vulgare testa... 159 3e-037
gb|BF261168.2|BF261168 HVSMEf0023O24f Hordeum vulgare seedl... 135 4e-030
gb|BM440990.2|BM440990 EBed02_SQ002_B18_R endosperm, 8 DPA,... 135 4e-030
gb|BQ753662.1|BQ753662 EBan01_SQ004_O05_R anther, yellow st... 127 1e-027
gb|CB883383.1|CB883383 HQ02B08w HQ Hordeum vulgare subsp. v... 125 4e-027
gb|BI953854.1|BI953854 HVSMEm0015A11f Hordeum vulgare green... 96 3e-018
gb|AL509103.1|AL509103 AL509103 Hordeum vulgare Barke devel... 80 2e-013
gb|BI960781.1|BI960781 HVSMEk0016A04f Hordeum vulgare testa... 72 5e-011
gb|BG368159.1|BG368159 HVSMEi0016A16f Hordeum vulgare 20 DA... 56 3e-006
gb|AL505998.1|AL505998 AL505998 Hordeum vulgare Barke devel... 52 5e-005
>gb|BJ452117.1|BJ452117 BJ452117 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak37n09 5', mRNA sequence
Length = 652
Score = 498 bits (251), Expect = e-139
Identities = 515/603 (85%)
Strand = Plus / Minus
Query: 543 gacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagca 602
|||||| |||||||||| ||||| ||||||||||||||||| | || |||||||| |||
Sbjct: 648 gacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaacatcatcggca 589
Query: 603 acatatggcttccagcttgttccagaccattcatagatctcaacagagtattccaggtca 662
|||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||
Sbjct: 588 acatatggcttccagcttgttccagaccattcgtatatctcaactgagtattccaagtca 529
Query: 663 tcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaacatta 722
|| || ||||||||||||| ||||||| |||||||||||||| |||||| | |||||
Sbjct: 528 tcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgcctgacattc 469
Query: 723 acagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtcacaaattgc 782
|| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actgccttcagatgacccctctcatggaagacccatttgcttgtctctgtcacaaattgt 409
Query: 783 tcatttccagctctctcgtatctcgttttgctaccagccttttgaacaccagacttcagg 842
|||||||||||| | || | ||| ||||||| || ||||| || ||||||||||| |||
Sbjct: 408 tcatttccagctttgtcatggctcattttgctgcctgccttctgcacaccagacttgagg 349
Query: 843 aaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcc 902
|||| ||||||||| | ||| ||||||||||||| || ||| |||||||| || || |||
Sbjct: 348 aacctgttgctaaacaaatccagtgatccagatatcaacacacgagcattgttcctagcc 289
Query: 903 tgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataactta 962
|||||||| |||||||||||||| || ||||| || || |||||| | | ||||||
Sbjct: 288 tgcataacagaaaccagtgatatggccgaccctgtgagagatggaacggatgccaactta 229
Query: 963 gtctttgggttagctgagtatgctgatggagaggcagataggactttcagaaccaaactg 1022
||| ||||| ||||| || || || || ||||||||||| || |||| |||||| |||
Sbjct: 228 gtccccgggtttgctgaatacgccgacggcgaggcagatagaaccttcaaaaccaagctg 169
Query: 1023 tttgatggattagccgtgtgtccaattccacgaaataatacaggagcctcaatcttttta 1082
|| |||||||| |||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct: 168 ttggatggattggccgcatgtccaatccctcgaaacaatacaggagcctcaatctttttg 109
Query: 1083 gaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtgtgatcgcct 1142
||||||| ||| |||||||||||||| |||||||| ||| |||||||||||||||| |||
Sbjct: 108 gaccccaatatcacatctgactgaatcagatcatcgccagcaatcaaggtgtgatcccct 49
Query: 1143 tca 1145
|||
Sbjct: 48 tca 46
>gb|BU987740.1|BU987740 HF15K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF15K04
5-PRIME, mRNA sequence
Length = 620
Score = 492 bits (248), Expect = e-137
Identities = 506/592 (85%)
Strand = Plus / Minus
Query: 543 gacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagca 602
|||||| |||||||||| ||||| ||||||||||||||||| | || |||||||| |||
Sbjct: 615 gacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaacatcatcggca 556
Query: 603 acatatggcttccagcttgttccagaccattcatagatctcaacagagtattccaggtca 662
|||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||
Sbjct: 555 acatatggcttccagcttgttccagaccattcgtatatctcaactgagtattccaagtca 496
Query: 663 tcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaacatta 722
|| || ||||||||||||| ||||||| |||||||||||||| |||||| | |||||
Sbjct: 495 tcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgcctgacattc 436
Query: 723 acagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtcacaaattgc 782
|| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actgccttcagatgacccctctcatggaagacccatttgcttgtctctgtcacaaattgt 376
Query: 783 tcatttccagctctctcgtatctcgttttgctaccagccttttgaacaccagacttcagg 842
|||||||||||| | || | ||| ||||||| || ||||| || ||||||||||| |||
Sbjct: 375 tcatttccagctttgtcatggctcattttgctgcctgccttctgcacaccagacttgagg 316
Query: 843 aaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcc 902
|||| ||||||||| | ||| ||||||||||||| || ||| |||||||| || || |||
Sbjct: 315 aacctgttgctaaacaaatccagtgatccagatatcaacacacgagcattgttcctagcc 256
Query: 903 tgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataactta 962
|||||||| |||||||||||||| || ||||| || || |||||| | | ||||||
Sbjct: 255 tgcataacagaaaccagtgatatggccgaccctgtgagagatggaacggatgccaactta 196
Query: 963 gtctttgggttagctgagtatgctgatggagaggcagataggactttcagaaccaaactg 1022
||| |||||| ||||| || || || || ||||||||||| || |||| |||||| |||
Sbjct: 195 gtccctgggtttgctgaatacgccgacggcgaggcagatagaaccttcaaaaccaagctg 136
Query: 1023 tttgatggattagccgtgtgtccaattccacgaaataatacaggagcctcaatcttttta 1082
|| |||||||| |||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct: 135 ttggatggattggccgcatgtccaatccctcgaaacaatacaggagcctcaatctttttg 76
Query: 1083 gaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtgt 1134
||||||| ||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 75 gaccccaatatcacatctgactgaatcagatcatcgccagcaatcaaggtgt 24
>gb|CV063418.1|CV063418 BNEL8B1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL8B1 5' similar to putative
dolichyl-di-phosphooligosaccharide- protein, mRNA
sequence
Length = 551
Score = 486 bits (245), Expect = e-136
Identities = 437/501 (87%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 520 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 461
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 460 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 401
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 400 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 341
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 340 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 281
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 280 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 221
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 220 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 161
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 160 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 101
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
| ||||| || ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 100 ctgacattcactgccttcagatgacccctctcatggaagacccatttgcttgtctctgtc 41
Query: 774 acaaattgctcatttccagct 794
|||||||| ||||||||||||
Sbjct: 40 acaaattgttcatttccagct 20
>gb|BU999438.1|BU999438 HI14I08r HI Hordeum vulgare subsp. vulgare cDNA clone HI14I08
5-PRIME, mRNA sequence
Length = 644
Score = 482 bits (243), Expect = e-134
Identities = 501/586 (85%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 561 taaggactcatcatgaaaaactggagttgcacatcatcag-caacatatggcttccagct 619
||||| ||||||||||||||||| | || |||||||| | |||||||||||||||||||
Sbjct: 641 taagggctcatcatgaaaaactgaatctgaacatcatcnggcaacatatggcttccagct 582
Query: 620 tgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacat 679
||||||||||||||| || |||||||| |||||||||| |||||| || |||||||||||
Sbjct: 581 tgttccagaccattcgtatatctcaactgagtattccaagtcatcattgatgcggtacat 522
Query: 680 gcctggttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccc 739
||| ||||||| |||||||||||||| |||||| | ||||| || ||||| || || ||
Sbjct: 521 gccaggttcatctgtctccccaaccttatggtgcctgacattcactgccttcagatgacc 462
Query: 740 cctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctctc 799
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct: 461 cctctcatggaagacccatttgcttgtctctgtcacaaattgttcatttccagctttgtc 402
Query: 800 gtatctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaaag 859
| ||| ||||||| || ||||| || ||||||||||| ||||||| ||||||||| |
Sbjct: 401 atggctcattttgctgcctgccttctgcacaccagacttgaggaacctgttgctaaacaa 342
Query: 860 atcaagtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccag 919
||| ||||||||||||| || ||| |||||||| || || ||||||||||| ||||||||
Sbjct: 341 atccagtgatccagatatcaacacacgagcattgttcctagcctgcataacagaaaccag 282
Query: 920 tgatatagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctga 979
|||||| || ||||| || || |||||| | | ||||||||| |||||| |||||
Sbjct: 281 tgatatggccgaccctgtgagagatggaacggatgccaacttagtccctgggtttgctga 222
Query: 980 gtatgctgatggagaggcagataggactttcagaaccaaactgtttgatggattagccgt 1039
|| || || || ||||||||||| || |||| |||||| ||||| |||||||| ||||
Sbjct: 221 atacgccgacggcgaggcagatagaaccttcaaaaccaagctgttggatggattggccgc 162
Query: 1040 gtgtccaattccacgaaataatacaggagcctcaatctttttagaccccagtatgacatc 1099
|||||||| || ||||| ||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 161 atgtccaatccctcgaaacaatacaggagcctcaatctttttggaccccaatatcacatc 102
Query: 1100 tgactgaataagatcatcaccaacaatcaaggtgtgatcgccttca 1145
||||||||| |||||||| ||| |||||||||||||||| ||||||
Sbjct: 101 tgactgaatcagatcatcgccagcaatcaaggtgtgatccccttca 56
>gb|CB875665.1|CB875665 HX08P22w HX Hordeum vulgare subsp. vulgare cDNA clone HX08P22
3-PRIME, mRNA sequence
Length = 679
Score = 452 bits (228), Expect = e-125
Identities = 417/480 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 200 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 259
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 260 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 319
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 320 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 379
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 380 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 439
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 440 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 499
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 500 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 559
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 560 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 619
Query: 714 ttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctctgtc 773
| ||||| || ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgacattcactgccttcagatgacccctctcatggaagacccatttgcttgtctctgtc 679
>gb|BJ459673.1|BJ459673 BJ459673 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37n09 3', mRNA sequence
Length = 613
Score = 434 bits (219), Expect = e-120
Identities = 419/483 (86%), Gaps = 2/483 (0%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 131 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 190
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 191 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 250
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 251 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 310
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 311 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 370
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 371 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 430
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 431 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 490
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 491 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 550
Query: 714 ttaacattaacagccttaagg-tgccccctctcatggaagacccatttgctt-gtctctg 771
| ||||| || ||||| ||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 551 ctgacattcactgccttcaggatgacccctctcatggaagacccatttgcttggtctctg 610
Query: 772 tca 774
|||
Sbjct: 611 tca 613
>gb|AV921789.1|AV921789 AV921789 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12n02 3', mRNA sequence
Length = 616
Score = 398 bits (201), Expect = e-109
Identities = 390/453 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 164 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 223
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 224 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 283
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 284 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 343
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 344 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 403
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 404 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 463
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 464 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 523
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 524 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 583
Query: 714 ttaacattaacagccttaaggtgccccctctca 746
| ||||| || ||||| || || |||||||||
Sbjct: 584 ctgacattcactgccttcagatgacccctctca 616
>gb|CA021101.1|CA021101 HZ39B21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B21
5-PRIME, mRNA sequence
Length = 582
Score = 392 bits (198), Expect = e-107
Identities = 387/450 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 460 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 401
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 400 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 341
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 340 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 281
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 280 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 221
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 220 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 161
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 160 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 101
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 100 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 41
Query: 714 ttaacattaacagccttaaggtgccccctc 743
| ||||| || ||||| || || ||||||
Sbjct: 40 ctgacattcactgccttcagatgacccctc 11
>gb|AV912123.1|AV912123 AV912123 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2n06 3', mRNA sequence
Length = 603
Score = 391 bits (197), Expect = e-107
Identities = 377/437 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 166 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 225
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 226 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 285
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 286 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 345
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 346 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 405
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 406 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 465
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 466 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 525
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 526 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 585
Query: 714 ttaacattaacagcctt 730
| ||||| || |||||
Sbjct: 586 ctgacattcactgcctt 602
>gb|AV912409.1|AV912409 AV912409 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3n06 3', mRNA sequence
Length = 620
Score = 391 bits (197), Expect = e-107
Identities = 377/437 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 184 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 243
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 244 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 303
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 304 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 363
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 364 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 423
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 424 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 483
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 484 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 543
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 544 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 603
Query: 714 ttaacattaacagcctt 730
| ||||| || |||||
Sbjct: 604 ctgacattcactgcctt 620
>gb|AV917048.1|AV917048 AV917048 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j10 5', mRNA sequence
Length = 515
Score = 389 bits (196), Expect = e-106
Identities = 429/507 (84%)
Strand = Plus / Minus
Query: 639 atctcaacagagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctcc 698
|||||||| |||||||||| |||||| || ||||||||||||| ||||||| ||||||
Sbjct: 515 atctcaactgagtattccaagtcatcattgatgcggtacatgctaggttcatctgtctcc 456
Query: 699 ccaaccttgtggtgcttaacattaacagccttaaggtgccccctctcatggaagacccat 758
|||||||| |||||| | ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 455 ccaaccttatggtgcctgacattcactgccttcagatgacccctctcatggaagacccat 396
Query: 759 ttgcttgtctctgtcacaaattgctcatttccagctctctcgtatctcgttttgctacca 818
||||||||||||||||||||||| |||||||||||| | || | ||| ||||||| ||
Sbjct: 395 ttgcttgtctctgtcacaaattgttcatttccagctttgtcatggctcattttgctgcct 336
Query: 819 gccttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagc 878
||||| || ||||||||||| ||||||| ||||||||| | ||| ||||||||||||| |
Sbjct: 335 gccttctgcacaccagacttgaggaacctgttgctaaacaaatccagtgatccagatatc 276
Query: 879 agcacccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagta 938
| ||| |||||||| || || ||||||||||| |||||||||||||| || ||||| ||
Sbjct: 275 aacacacgagcattgttcctagcctgcataacagaaaccagtgatatggccgaccctgtg 216
Query: 939 agcgatggaggcaacgataacttagtctttgggttagctgagtatgctgatggagaggca 998
|| |||||| | | ||||||||| |||||| ||||| || || || || ||||||
Sbjct: 215 agagatggaacggatgccaacttagtccctgggtttgctgaatacgccgacggcgaggca 156
Query: 999 gataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattccacgaaat 1058
||||| || |||| |||||| ||||| |||||||| |||| |||||||| || |||||
Sbjct: 155 gatagaaccttcaaaaccaagctgttggatggattggccgcatgtccaatccctcgaaac 96
Query: 1059 aatacaggagcctcaatctttttagaccccagtatgacatctgactgaataagatcatca 1118
||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||
Sbjct: 95 aatacaggagcctcaatctttttggaccccaatatcacatctgactgaatcagatcatcg 36
Query: 1119 ccaacaatcaaggtgtgatcgccttca 1145
||| |||||||||||| ||| ||||||
Sbjct: 35 ccagcaatcaaggtgtnatccccttca 9
>gb|AV918303.1|AV918303 AV918303 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j10 3', mRNA sequence
Length = 619
Score = 389 bits (196), Expect = e-106
Identities = 364/420 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 185 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 244
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 245 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 304
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 305 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 364
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 365 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 424
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 425 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 484
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 485 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 544
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 545 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 604
>gb|AV919781.1|AV919781 AV919781 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7j11 3', mRNA sequence
Length = 619
Score = 389 bits (196), Expect = e-106
Identities = 364/420 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 184 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 243
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 244 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 303
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 304 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 363
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 364 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 423
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 424 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 483
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 484 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 543
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 544 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtgc 603
>gb|AV910025.1|AV910025 AV910025 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2n06 5', mRNA sequence
Length = 607
Score = 387 bits (195), Expect = e-106
Identities = 363/419 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 419 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 360
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 359 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 300
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 299 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 240
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 239 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 180
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 179 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 120
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 119 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 60
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtg 712
|||| |||||| || ||||||||||||| ||||||| |||||||||||||| |||||
Sbjct: 59 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaaccttatggtg 1
>gb|AV914689.1|AV914689 AV914689 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7j11 5', mRNA sequence
Length = 561
Score = 385 bits (194), Expect = e-105
Identities = 422/498 (84%)
Strand = Plus / Minus
Query: 648 gagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttg 707
|||||||||| |||||| || ||||||||||||| ||||||| ||||||||||||||
Sbjct: 557 gagtattccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaacctta 498
Query: 708 tggtgcttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtc 767
|||||| | ||||| || ||||| || || ||||||||||||||||||||||||||||||
Sbjct: 497 tggtgcctgacattcactgccttcagatgacccctctcatggaagacccatttgcttgtc 438
Query: 768 tctgtcacaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttga 827
|||||||||||||| |||||||||||| | || | ||| ||||||| || ||||| ||
Sbjct: 437 tctgtcacaaattgttcatttccagctttgtcatggctcattttgctgcctgccttctgc 378
Query: 828 acaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccga 887
||||||||||| ||||||| ||||||||| | ||| ||||||||||||| || ||| |||
Sbjct: 377 acaccagacttgaggaacctgttgctaaacaaatccagtgatccagatatcaacacacga 318
Query: 888 gcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatgga 947
||||| || || ||||||||||| |||||||||||||| || ||||| || || ||||||
Sbjct: 317 gcattgttcctagcctgcataacagaaaccagtgatatggccgaccctgtgagagatgga 258
Query: 948 ggcaacgataacttagtctttgggttagctgagtatgctgatggagaggcagataggact 1007
| | ||||||||| |||||| ||||| || || || || ||||||||||| ||
Sbjct: 257 acggatgccaacttagtccctgggtttgctgaatacgccgacggcgaggcagatagaacc 198
Query: 1008 ttcagaaccaaactgtttgatggattagccgtgtgtccaattccacgaaataatacagga 1067
|||| |||||| ||||| |||||||| |||| |||||||| || ||||| |||||||||
Sbjct: 197 ttcaaaaccaagctgttggatggattggccgcatgtccaatccctcgaaacaatacagga 138
Query: 1068 gcctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatc 1127
|||||||||||||| ||||||| ||| |||||||||||||| |||||||| ||| |||||
Sbjct: 137 gcctcaatctttttggaccccaatatcacatctgactgaatcagatcatcgccagcaatc 78
Query: 1128 aaggtgtgatcgccttca 1145
||||||||||| ||||||
Sbjct: 77 aaggtgtgatccccttca 60
>gb|BU984047.1|BU984047 HA31N09r HA Hordeum vulgare subsp. vulgare cDNA clone HA31N09
5-PRIME, mRNA sequence
Length = 593
Score = 383 bits (193), Expect = e-104
Identities = 358/413 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 426 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 367
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 366 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 307
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 306 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 247
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 246 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 187
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 186 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 127
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 126 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 67
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaacctt 706
|||| |||||| || ||||||||||||| ||||||| ||||||||||||||
Sbjct: 66 tccaagtcatcattgatgcggtacatgctaggttcatctgtctccccaacctt 14
>gb|AV910248.1|AV910248 AV910248 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3n06 5', mRNA sequence
Length = 512
Score = 371 bits (187), Expect = e-101
Identities = 364/422 (86%), Gaps = 2/422 (0%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 425 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 366
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 365 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 306
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 305 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 246
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 245 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 186
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 185 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 126
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 125 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 66
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcat--tggtctccccaaccttgtggt 711
|||| |||||| || ||||||||||||| ||||||| || |||||||||||| ||||
Sbjct: 65 tccaagtcatcattgatgcggtacatgctaggttcatcctgtactccccaaccttatggt 6
Query: 712 gc 713
||
Sbjct: 5 gc 4
>gb|CB858496.1|CB858496 HI07E04w HI Hordeum vulgare subsp. vulgare cDNA clone HI07E04
3-PRIME, mRNA sequence
Length = 601
Score = 371 bits (187), Expect = e-101
Identities = 352/407 (86%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 195 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 254
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 255 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 314
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 315 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 374
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 375 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 434
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
||||| | |||||| |||||||||| ||||| ||||||||||||||||| | || |||
Sbjct: 435 ttgtcggttgacatatttttcagaacgtaagggctcatcatgaaaaactgaatctgaaca 494
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 495 tcatcggcaacatatggcttccagcttgttccagaccattcgtatatctcaactgagtat 554
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctcccc 700
|||| |||||| || ||||||||||||| ||||||| ||||||||
Sbjct: 555 tccaagtcatcattgatgcggtacatgctaggttcatctgtctcccc 601
>gb|CV058984.1|CV058984 BNEL43b2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL43b2 5' similar to putative
dolichyl-di-phosphooligosaccharide- protein, mRNA
sequence
Length = 600
Score = 367 bits (185), Expect = e-100
Identities = 455/548 (83%)
Strand = Plus / Minus
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|||||||||| ||||||| |||||||||||||| |||||| | ||||| || |||||
Sbjct: 600 cggtacatgctaggttcatctgtctccccaaccttatggtgcctgacattcactgccttc 541
Query: 732 aggtgccccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttcca 791
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 540 agatgacccctctcatggaagacccatttgcttgtctctgtcacaaattgttcatttcca 481
Query: 792 gctctctcgtatctcgttttgctaccagccttttgaacaccagacttcaggaaccggttg 851
||| | || | ||| ||||||| || ||||| || ||||||||||| ||||||| ||||
Sbjct: 480 gctttgtcatggctcattttgctgcctgccttctgcacaccagacttgaggaacctgttg 421
Query: 852 ctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgcataacc 911
||||| | ||| ||||||||||||| || ||| |||||||| || || |||||||||||
Sbjct: 420 ctaaacaaatccagtgatccagatatcaacacacgagcattgttcctagcctgcataaca 361
Query: 912 gaaaccagtgatatagctgacccagtaagcgatggaggcaacgataacttagtctttggg 971
|||||||||||||| || ||||| || || |||||| | | ||||||||| |||
Sbjct: 360 gaaaccagtgatatggccgaccctgtgagagatggaacggatgccaacttagtccccggg 301
Query: 972 ttagctgagtatgctgatggagaggcagataggactttcagaaccaaactgtttgatgga 1031
|| ||||| || || || || ||||||||||| || |||| |||||| ||||| ||||||
Sbjct: 300 tttgctgaatacgccgacggcgaggcagatagaaccttcaaaaccaagctgttggatgga 241
Query: 1032 ttagccgtgtgtccaattccacgaaataatacaggagcctcaatctttttagaccccagt 1091
|| |||| |||||||| || ||||| ||||||||||||||||||||||| ||||||| |
Sbjct: 240 ttggccgcatgtccaatccctcgaaacaatacaggagcctcaatctttttggaccccaat 181
Query: 1092 atgacatctgactgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatcc 1151
|| |||||||||||||| |||||||| ||| |||||||||||||||| |||||| ||
Sbjct: 180 atcacatctgactgaatcagatcatcgccagcaatcaaggtgtgatccccttcagactca 121
Query: 1152 atagcggcatannnnntgtggtcaataaccattnnnnctggatcctcatcaaaatcaacc 1211
| | |||||| |||||||||||||||| | || ||||||||||||||||||
Sbjct: 120 gtggaggcataattaatgtggtcaataaccatcgcttccgggtcctcatcaaaatcaacc 61
Query: 1212 ccacactc 1219
||||||||
Sbjct: 60 ccacactc 53
>gb|AV919937.1|AV919937 AV919937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8h20 3', mRNA sequence
Length = 527
Score = 272 bits (137), Expect = 3e-071
Identities = 289/341 (84%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 342 gttgaaaatgaggcagtgtagtatgggtacgctgatgttatgaacctctcatactcgtta 401
|||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
Sbjct: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246
Query: 402 tgcctgtaagggcgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctc 461
|||||||| || || |||||||||||||||| || ||| | |||| ||||| |||||
Sbjct: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306
Query: 462 tggtactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgttgag 521
|||||||||||||||||||| |||||| | || ||||| |||||||||||||||| | |
Sbjct: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366
Query: 522 tataaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaac 581
|||| | | | ||||| | |||||| || | ||||| ||||| |||||||||||||||
Sbjct: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426
Query: 582 tggagttgcacatcatcagcaacatatggcttccagcttgttccagacca-ttcatagat 640
|| | || |||||||| | |||||||||||||||||||||||||||||| ||| || ||
Sbjct: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486
Query: 641 ctcaacagagtattccaggtcatcgttaatgcggtacatgc 681
|||||| |||||||||| |||||| || |||||||||||||
Sbjct: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527
>gb|BG415601.1|BG415601 HVSMEk0007C11f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0007C11f, mRNA sequence
Length = 625
Score = 268 bits (135), Expect = 4e-070
Identities = 360/434 (82%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 591 acatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagag 650
|||||||| ||||||||||||| |||| ||||||||||||||| || ||||| | |||
Sbjct: 433 acatcatcggcaacatatggct-ccagtttgttccagaccattggtatttctcacctgag 375
Query: 651 tattccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtgg 710
|||||| |||||| || ||||||||||||| |||||||| |||||||||||||| |||
Sbjct: 374 tattccnagtcatcattgatgcggtacatgctaggttcatttgtctccccaaccttatgg 315
Query: 711 tgcttaacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctct 770
|| | ||||| || || || || || ||| |||||||||||||||||||||||||||||
Sbjct: 314 ggcctgacattcactgctttcagatgacccttctcatggaagacccatttgcttgtctct 255
Query: 771 gtcacaaattgctcatttccagctctctcgtatctcgttttgctaccagccttttgaaca 830
||||||||||| |||||||||||| | || | ||| ||||||| || ||||| || |||
Sbjct: 254 gtcacaaattgttcatttccagctttgtcatggctcattttgctgcctgccttctgcaca 195
Query: 831 ccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagca 890
|||||||| ||||||| ||||||||| | ||| ||||||||||||| || ||| ||||||
Sbjct: 194 ccagacttgaggaacctgttgctaaacaaatccagtgatccagatatcaacacacgagca 135
Query: 891 ttatttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggc 950
|| || || ||||||||||| |||||||||||||| || ||||| || || ||||||
Sbjct: 134 ttgttcctagcctgcataacagaaaccagtgatatggccgaccctgtgagagatggaacg 75
Query: 951 aacgataacttagtctttgggttagctgagtatgctgatggagaggcagataggactttc 1010
| | ||||||||| |||||| ||||| || || || || ||||||||||| || |||
Sbjct: 74 gatgccaacttagtccctgggtttgctgaatacgccgacggcgaggcagatagaaccttc 15
Query: 1011 agaaccaaactgtt 1024
| |||||| |||||
Sbjct: 14 aaaaccaagctgtt 1
>gb|CA032662.1|CA032662 HX13N04r HX Hordeum vulgare subsp. vulgare cDNA clone HX13N04
5-PRIME, mRNA sequence
Length = 474
Score = 236 bits (119), Expect = 1e-060
Identities = 239/279 (85%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 279 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 220
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 219 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 160
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 159 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 100
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||| ||| |||| | | |
Sbjct: 99 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatatagagcagtt 40
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatc 572
||||| | |||||| |||||||||| ||||| ||||||
Sbjct: 39 ttgtcggttgacatatttttcagaacgtaagggctcatc 1
>gb|AL511118.1|AL511118 AL511118 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A21u 3',
mRNA sequence
Length = 518
Score = 232 bits (117), Expect = 2e-059
Identities = 204/233 (87%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 218 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 277
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 278 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 337
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 338 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 397
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataa 526
||||||||||||||||| || ||||| |||||||||||||||| ||| |||||
Sbjct: 398 ttgaactggaaaactccataaacatccggaactttgaaggatgctgaatataa 450
>gb|BI777078.2|BI777078 EBpi03_SQ001_N08_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_N08 5', mRNA sequence
Length = 246
Score = 228 bits (115), Expect = 4e-058
Identities = 196/223 (87%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 242 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 183
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 182 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 123
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
||||||||||||||||||| || ||| | ||||| ||||| ||||| ||||||||||||
Sbjct: 122 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttggtactcaact 63
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatg 516
||||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 62 ttgaactggaaaactccataaacatccggaactttgaaggatg 20
>gb|AL507857.1|AL507857 AL507857 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A21V 5',
mRNA sequence
Length = 612
Score = 222 bits (112), Expect = 2e-056
Identities = 319/390 (81%), Gaps = 1/390 (0%)
Strand = Plus / Minus
Query: 831 ccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagca 890
|||||||| ||||||| ||||||||| | ||| ||||||||||||| || ||| ||||||
Sbjct: 601 ccagacttgaggaacctgttgctaaacaaatccagtgatccagatatcaacacacgagca 542
Query: 891 ttatttcttgcctgcataacc-gaaaccagtgatatagctgacccagtaagcgatggagg 949
|| || | ||||||||||| |||||||||||||| || ||||| || || ||||||
Sbjct: 541 ttgttcntagcctgcataacaagaaaccagtgatatggccgaccctgtgagagatggaac 482
Query: 950 caacgataacttagtctttgggttagctgagtatgctgatggagaggcagataggacttt 1009
| | ||||||||| |||||| ||||| || || || || ||||||||||| || ||
Sbjct: 481 ggatgccaacttagtccctgggtttgctgaatacgccgacggcgaggcagatagaacctt 422
Query: 1010 cagaaccaaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagc 1069
|| |||||| ||||| |||||||| |||| |||||||| || ||||| |||||||||||
Sbjct: 421 caaaaccaagctgttggatggattggccgcatgtccaatccctcgaaacaatacaggagc 362
Query: 1070 ctcaatctttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaa 1129
|||||||||||| ||||||| ||| |||||||||||||| |||||||| ||| |||||||
Sbjct: 361 ctcaatctttttggaccccaatatcacatctgactgaatcagatcatcgccagcaatcaa 302
Query: 1130 ggtgtgatcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnc 1189
||||||||| |||||| || | | |||||| |||||||||||||||| |
Sbjct: 301 ggtgtgatccccttcagactcagtggaggcataattaatgtggtcaataaccatcgcttc 242
Query: 1190 tggatcctcatcaaaatcaaccccacactc 1219
|| ||||||||||||||||||||||||||
Sbjct: 241 cgggtcctcatcaaaatcaaccccacactc 212
>gb|BG343577.2|BG343577 HVSMEg0006H01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H01f, mRNA sequence
Length = 985
Score = 204 bits (103), Expect = 5e-051
Identities = 326/402 (81%), Gaps = 2/402 (0%)
Strand = Plus / Minus
Query: 819 gccttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagc 878
||||| || |||||||||| |||||| ||||||||| | ||| ||||||||||||| |
Sbjct: 615 gccttctgcacaccagactganggaacctgttgctaaacaaatccagtgatccagatatc 556
Query: 879 agcac-ccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagt 937
| ||| | ||||| | || || || |||||||| |||||||||||||| || ||||| ||
Sbjct: 555 a-cacacngagcantgttcctagcntgcataacagaaaccagtgatatggccgaccctgt 497
Query: 938 aagcgatggaggcaacgataacttagtctttgggttagctgagtatgctgatggagaggc 997
|| |||||| | | ||||||||| |||||| ||||| || || || || |||||
Sbjct: 496 gagagatggaacggatgccaacttagtccctgggtttgctgaatacgccgacggcgaggc 437
Query: 998 agataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattccacgaaa 1057
|||||| || |||| |||||| ||||| |||||||| |||| |||||||| || |||||
Sbjct: 436 agatagaaccttcaaaaccaagctgttggatggattggccgcatgtccaatccctcgaaa 377
Query: 1058 taatacaggagcctcaatctttttagaccccagtatgacatctgactgaataagatcatc 1117
||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||
Sbjct: 376 caatacaggagcctcaatctttttggaccccaatatcacatctgactgaatcagatcatc 317
Query: 1118 accaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtggtcaat 1177
||| |||||||||||||||| |||||| || | | |||||| ||||||||||
Sbjct: 316 gccagcaatcaaggtgtgatccccttcagactcagtggaggcataattaatgtggtcaat 257
Query: 1178 aaccattnnnnctggatcctcatcaaaatcaaccccacactc 1219
|||||| | || ||||||||||||||||||||||||||
Sbjct: 256 aaccatcgcttccgggtcctcatcaaaatcaaccccacactc 215
>gb|BU997209.1|BU997209 HI07E04r HI Hordeum vulgare subsp. vulgare cDNA clone HI07E04
5-PRIME, mRNA sequence
Length = 660
Score = 204 bits (103), Expect = 5e-051
Identities = 286/350 (81%)
Strand = Plus / Minus
Query: 870 ccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgatatagct 929
||||||| || ||| |||||||| || || ||||||||||| |||||||||||||| ||
Sbjct: 660 ccagatatcaacacacgagcattgttcctagcctgcataacagaaaccagtgatatggcc 601
Query: 930 gacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtatgctgat 989
||||| || || |||||| | | ||||||||| |||||| ||||| || || ||
Sbjct: 600 gaccctgtgagagatggaacggatgccaacttagtccctgggtttgctgaatacgccgac 541
Query: 990 ggagaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaatt 1049
|| ||||||||||| || |||| |||||| ||||| |||||||| |||| ||||||||
Sbjct: 540 ggcgaggcagatagaaccttcaaaaccaagctgttggatggattggccgcatgtccaatc 481
Query: 1050 ccacgaaataatacaggagcctcaatctttttagaccccagtatgacatctgactgaata 1109
|| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct: 480 cctcgaaacaatacaggagcctcaatctttttggaccccaatatcacatctgactgaatc 421
Query: 1110 agatcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntg 1169
|||||||| ||| |||||||||||||||| |||||| || | | |||||| ||
Sbjct: 420 agatcatcgccagcaatcaaggtgtgatccccttcagactcagtggaggcataattaatg 361
Query: 1170 tggtcaataaccattnnnnctggatcctcatcaaaatcaaccccacactc 1219
|||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 360 tggtcaataaccatcgcttccgggtcctcatcaaaatcaaccccacactc 311
>gb|BI950887.1|BI950887 HVSMEl0023I15f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0023I15f, mRNA sequence
Length = 999
Score = 202 bits (102), Expect = 2e-050
Identities = 322/398 (80%), Gaps = 1/398 (0%)
Strand = Plus / Minus
Query: 822 ttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagc 881
||||| ||||||||||| ||||||| |||||||| || ||| ||||||||||||| || |
Sbjct: 516 ttttgcacaccagacttgaggaacctgttgctaacaa-atccagtgatccagatatcaac 458
Query: 882 acccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagc 941
|| |||||||| || | ||||||||||| ||| |||||||||| | ||||| || ||
Sbjct: 457 acacgagcattgttcttagcctgcataacagaacccagtgatatgtccgaccctgtgaga 398
Query: 942 gatggaggcaacgataacttagtctttgggttagctgagtatgctgatggagaggcagat 1001
|||||| | | ||||||||| ||||| ||||| || || || || |||||||||
Sbjct: 397 gatggaacggatgccaacttagtccctgggtntgctgaatacgccgacggcgaggcagat 338
Query: 1002 aggactttcagaaccaaactgtttgatggattagccgtgtgtccaattccacgaaataat 1061
|| || |||| |||||| ||||| |||||||| |||| |||||||| || |||| |||
Sbjct: 337 agaaccttcaaaaccaagctgttggatggattggccgcatgtccaatccctngaaacaat 278
Query: 1062 acaggagcctcaatctttttagaccccagtatgacatctgactgaataagatcatcacca 1121
|||||||||||||||||||| ||||||| ||| |||||||| ||||| |||||||| |||
Sbjct: 277 acaggagcctcaatctttttggaccccaatatcacatctgantgaatcagatcatcgcca 218
Query: 1122 acaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtggtcaataacc 1181
|||||||||||||||| |||||| || | | |||||| ||||||||||||||
Sbjct: 217 gcaatcaaggtgtgatccccttcagactcagtggaggcataattaatgtggtcaataacc 158
Query: 1182 attnnnnctggatcctcatcaaaatcaaccccacactc 1219
|| | || ||||||||||||||||||||||||||
Sbjct: 157 atcgcttccgggtcctcatcaaaatcaaccccacactc 120
>gb|AV916355.1|AV916355 AV916355 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12n02 5', mRNA sequence
Length = 345
Score = 202 bits (102), Expect = 2e-050
Identities = 256/306 (83%), Gaps = 1/306 (0%)
Strand = Plus / Minus
Query: 841 ggaaccggttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttg 900
|||||| ||||||||| | ||| ||||||||||||| || ||| |||||||| || || |
Sbjct: 342 ggaacctgttgctaaacaaatccagtgatccagatatcaacacacgagcattgttcctag 283
Query: 901 cctgcataaccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataact 960
|||||||||| |||||||||||||| || ||||| || || |||||| | | ||||
Sbjct: 282 cctgcataacagaaaccagtgatatggccgaccctgtgagagatggaacggatgccaact 223
Query: 961 tagtctttgggttagctgagtatgctgatggagaggcagataggactttcagaaccaaac 1020
||||| |||||| ||||| || || || || ||||||||||| || |||| |||||| |
Sbjct: 222 tagtccctgggtttgctgaatacgccgacggcgaggcagatagaaccttcaaaaccaagc 163
Query: 1021 tgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctcaatctttt 1080
|||| |||||||| |||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct: 162 tgttggatggattggccgcatgtccaatccctcgaaacaatacaggagcctcaatctttt 103
Query: 1081 tagaccccagtatgacatctgactgaataagatcatcaccaacaat-caaggtgtgatcg 1139
| ||||||| ||| |||||||||||||| |||||||| ||| |||| ||||||||||||
Sbjct: 102 tggaccccaatatcacatctgactgaatcagatcatcgccagcaatncaaggtgtgatcc 43
Query: 1140 ccttca 1145
||||||
Sbjct: 42 ccttca 37
>gb|AL509299.1|AL509299 AL509299 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F14u 3',
mRNA sequence
Length = 415
Score = 186 bits (94), Expect = 1e-045
Identities = 173/198 (87%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| ||||||||| ||| |||||||||||||| || | ||| ||||||||||||
Sbjct: 214 tatttgtgatacaggtacgcaactgagaatatgaagaaggctcccattgttgaaaatgag 273
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| ||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 274 gcagcatagtatggaaacgctgaagttatgaacctctcatactcgtcatgcctgtatggc 333
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctct-ggtactcaac 472
||||||||||||||||||| || ||| | ||||| ||||| ||||| | ||||||||||
Sbjct: 334 cgcactggaatctgctttgcaagagagacgccagtgtatccaagcctttgggtactcaac 393
Query: 473 tttgaactggaaaactcc 490
||||||||||||||||||
Sbjct: 394 tttgaactggaaaactcc 411
>gb|BF261152.2|BF261152 HVSMEf0023O08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0023O08f, mRNA sequence
Length = 726
Score = 182 bits (92), Expect = 2e-044
Identities = 218/263 (82%)
Strand = Plus / Minus
Query: 957 aacttagtctttgggttagctgagtatgctgatggagaggcagataggactttcagaacc 1016
||||||||| |||||| ||||| || || || || ||||||||||| || |||| ||||
Sbjct: 690 aacttagtccctgggtttgctgaatacgccgacggcgaggcagatagaaccttcaaaacc 631
Query: 1017 aaactgtttgatggattagccgtgtgtccaattccacgaaataatacaggagcctcaatc 1076
|| ||||| |||||||| |||| |||||||| || ||||| ||||||||||||||||||
Sbjct: 630 aagctgttggatggattggccgcatgtccaatccctcgaaacaatacaggagcctcaatc 571
Query: 1077 tttttagaccccagtatgacatctgactgaataagatcatcaccaacaatcaaggtgtga 1136
||||| ||||||| ||| |||||||||||||| |||||||| ||| ||||||||||||||
Sbjct: 570 tttttggaccccaatatcacatctgactgaatcagatcatcgccagcaatcaaggtgtga 511
Query: 1137 tcgccttcaacatccatagcggcatannnnntgtggtcaataaccattnnnnctggatcc 1196
|| |||||| || | | |||||| |||||||||||||||| | || |||
Sbjct: 510 tccccttcagactcagtggaggcataattaatgtggtcaataaccatcgcttccgggtcc 451
Query: 1197 tcatcaaaatcaaccccacactc 1219
|||||||||||||||||||||||
Sbjct: 450 tcatcaaaatcaaccccacactc 428
>gb|BU982643.1|BU982643 HA27C18r HA Hordeum vulgare subsp. vulgare cDNA clone HA27C18
5-PRIME, mRNA sequence
Length = 597
Score = 174 bits (88), Expect = 5e-042
Identities = 190/227 (83%)
Strand = Plus / Minus
Query: 993 gaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattcca 1052
||||||||||| || |||| |||||| ||||| |||||||| |||| |||||||| ||
Sbjct: 580 gaggcagatagaaccttcaaaaccaagctgttggatggattggccgcatgtccaatccct 521
Query: 1053 cgaaataatacaggagcctcaatctttttagaccccagtatgacatctgactgaataaga 1112
||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct: 520 cgaaacaatacaggagcctcaatctttttggaccccaatatcacatctgactgaatcaga 461
Query: 1113 tcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtgg 1172
||||| ||| |||||||||||||||| |||||| || | | |||||| |||||
Sbjct: 460 tcatcgccagcaatcaaggtgtgatccccttcagactcagtggaggcataattaatgtgg 401
Query: 1173 tcaataaccattnnnnctggatcctcatcaaaatcaaccccacactc 1219
||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 400 tcaataaccatcgcttccgggtcctcatcaaaatcaaccccacactc 354
>gb|BG418692.2|BG418692 HVSMEk0024A01f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0024A01f, mRNA sequence
Length = 822
Score = 159 bits (80), Expect = 3e-037
Identities = 383/483 (79%), Gaps = 3/483 (0%)
Strand = Plus / Minus
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
||||||||| | |||||||||| |||||| |||||||||||||| ||||| |||| | |
Sbjct: 596 cccctctcaggaaagacccattggcttgt-tctgtcacaaattgttcattcccagtt-tg 539
Query: 798 tcgtatctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaa 857
|| ||| |||||| || ||||| || |||||| |||| ||||||| ||||||||
Sbjct: 538 tcagggctcattttgcggcctgccttgtgcacaccacacttgaggaacctgttgctaagc 479
Query: 858 agatcaagtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaacc 917
||| ||||||||||||| || ||| ||||| || || | ||||||||||| ||| ||
Sbjct: 478 gaatccagtgatccagatatcaacacacgagcgttgttcgtagcctgcataacagaaccc 419
Query: 918 agtgatatagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagct 977
|||||||| | ||||| || || |||||| | | ||||||||| |||||| |||
Sbjct: 418 agtgatatgccagaccctgtgagagatggaacgcatgccaacttagtccctgggtttgct 359
Query: 978 g-agtatgctgatggagaggcagataggactttcagaaccaaactgtttgatggattagc 1036
| | || || || || ||||||||||| | |||| |||||| ||||| |||||||| |
Sbjct: 358 gcaatacgccgacggcgaggcagatagagccttcaaaaccaagctgttggatggattgtc 299
Query: 1037 cgtgtgtccaattccacgaaataatacaggagcctcaatctttttagaccccagtatgac 1096
|| |||||||| || |||| ||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 298 cgcatgtccaatccctcgaagcaatacaggagcctcaatctttttggaccccaatatcac 239
Query: 1097 atctgactgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatccatagc 1156
|||||| ||||| |||||||| ||| |||||||||||||||| |||||| || | |
Sbjct: 238 atctgaatgaatcagatcatcgccagcaatcaaggtgtgatccccttcagactcagtgga 179
Query: 1157 ggcatannnnntgtggtcaataaccattnnnnctggatcctcatcaaaatcaaccccaca 1216
|||||| |||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 178 ggcataattaatgtggtcaataaccatcgcttccgggtcctcatcaaaatcaaccccaca 119
Query: 1217 ctc 1219
|||
Sbjct: 118 ctc 116
>gb|BF261168.2|BF261168 HVSMEf0023O24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0023O24f, mRNA sequence
Length = 730
Score = 135 bits (68), Expect = 4e-030
Identities = 185/227 (81%)
Strand = Plus / Minus
Query: 993 gaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattcca 1052
||||||||||| || |||| |||||| ||||| |||| ||| |||| |||||||| ||
Sbjct: 655 gaggcagatagaaccttcaaaaccaacctgttggatgaattggccgcatgtccaatccct 596
Query: 1053 cgaaataatacaggagcctcaatctttttagaccccagtatgacatctgactgaataaga 1112
|||| |||||||||||||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct: 595 cgaatcgatacaggagcctcaatctttttggaccccaatatcacatctgactgaatcaga 536
Query: 1113 tcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtgg 1172
||||| ||| | |||||||||||||| |||||| || | |||||| |||||
Sbjct: 535 tcatcgccagccatcaaggtgtgatccccttcagagtcagtgcaggcataattaatgtgg 476
Query: 1173 tcaataaccattnnnnctggatcctcatcaaaatcaaccccacactc 1219
||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 475 tcaataaccatcgcttccgggtcctcatcaaaatcaaccccacactc 429
>gb|BM440990.2|BM440990 EBed02_SQ002_B18_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ002_B18 5', mRNA sequence
Length = 253
Score = 135 bits (68), Expect = 4e-030
Identities = 189/227 (83%), Gaps = 3/227 (1%)
Strand = Plus / Minus
Query: 864 agtgatccagatagcagcacccgagcattatttctt-gcctgcataaccgaaaccagtga 922
||||||||||||| || ||| ||||||| ||||| ||||||||||| |||||||||||
Sbjct: 232 agtgatccagatatcaacacacgagcatg--ttcttagcctgcataacagaaaccagtga 175
Query: 923 tatagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagta 982
||| || ||||| || || |||||| | | ||||||||| ||||||| ||||| ||
Sbjct: 174 tatggccgaccctgtgagagatggaacggatgccaacttagtccttgggtttgctgaata 115
Query: 983 tgctgatggagaggcagataggactttcagaaccaaactgtttgatggattagccgtgtg 1042
|| || || ||||||||||| ||||||| |||||| ||||| |||||||| |||| ||
Sbjct: 114 cgccgacggcgaggcagatagaactttcaaaaccaagctgttggatggattggccgcatg 55
Query: 1043 tccaattccacgaaataatacaggagcctcaatctttttagacccca 1089
|||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct: 54 tccaatccctcgaaacaatacaggagcctcaatctttttggacccca 8
>gb|BQ753662.1|BQ753662 EBan01_SQ004_O05_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_O05 5', mRNA sequence
Length = 610
Score = 127 bits (64), Expect = 1e-027
Identities = 133/159 (83%)
Strand = Plus / Minus
Query: 1061 tacaggagcctcaatctttttagaccccagtatgacatctgactgaataagatcatcacc 1120
||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||| ||
Sbjct: 610 tacaggagcctcaatctttttggaccccaatatcacatctgactgaatcagatcatcgcc 551
Query: 1121 aacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtggtcaataac 1180
| |||||||||||||||| |||||| || | | |||||| |||||||||||||
Sbjct: 550 agcaatcaaggtgtgatccccttcagactcagtggaggcataattaatgtggtcaataac 491
Query: 1181 cattnnnnctggatcctcatcaaaatcaaccccacactc 1219
||| | || ||||||||||||||||||||||||||
Sbjct: 490 catcgcttccgggtcctcatcaaaatcaaccccacactc 452
>gb|CB883383.1|CB883383 HQ02B08w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02B08
3-PRIME, mRNA sequence
Length = 634
Score = 125 bits (63), Expect = 4e-027
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 1062 acaggagcctcaatctttttagaccccagtatgacatctgactgaataagatcatcacca 1121
|||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 634 acaggagcctcaatctttttggaccccaatatcacatctgactgaatcagatcatcgcca 575
Query: 1122 acaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtggtcaataacc 1181
|||||||||||||||| |||||| || | | |||||| ||||||||||||||
Sbjct: 574 gcaatcaaggtgtgatccccttcagactcagtggaggcataattaatgtggtcaataacc 515
Query: 1182 attnnnnctggatcctcatcaaaatcaaccccacactc 1219
|| | || ||||||||||||||||||||||||||
Sbjct: 514 atcgcttccgggtcctcatcaaaatcaaccccacactc 477
>gb|BI953854.1|BI953854 HVSMEm0015A11f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0015A11f, mRNA sequence
Length = 624
Score = 95.6 bits (48), Expect = 3e-018
Identities = 144/179 (80%)
Strand = Plus / Minus
Query: 1041 tgtccaattccacgaaataatacaggagcctcaatctttttagaccccagtatgacatct 1100
|||||||| || |||| ||||||||||||||||||||||| | ||||| ||| ||||
Sbjct: 614 tgtccaatcccttgaaacaatacaggagcctcaatctttttggcccccaatatcccatcg 555
Query: 1101 gactgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggca 1160
||||||| |||||||| ||| |||||||||||||||| |||||| || | ||||
Sbjct: 554 cactgaatcagatcatcgccagcaatcaaggtgtgatccccttcagactcagtgaaggca 495
Query: 1161 tannnnntgtggtcaataaccattnnnnctggatcctcatcaaaatcaaccccacactc 1219
|| |||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 494 taattaatgtggtcaataaccatcgcttccgggtcctcatcaaaatcaaccccacactc 436
>gb|AL509103.1|AL509103 AL509103 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10L12V 5',
mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 127/155 (81%), Gaps = 3/155 (1%)
Strand = Plus / Minus
Query: 1068 gcctcaatctttttagacccc-agtatgacatctgactgaat-aagatcatcaccaacaa 1125
|||||||||||||| |||||| | ||| |||||||||||||| ||||||||| ||| |||
Sbjct: 666 gcctcaatctttttggacccccaatatcacatctgactgaatcaagatcatcgccagcaa 607
Query: 1126 tcaaggtgtgat-cgccttcaacatccatagcggcatannnnntgtggtcaataaccatt 1184
|||||||||||| | |||||| || | | |||||| ||||||||||||||||
Sbjct: 606 tcaaggtgtgatcccccttcagactcagtggaggcataattaatgtggtcaataaccatc 547
Query: 1185 nnnnctggatcctcatcaaaatcaaccccacactc 1219
| || ||||||||||||||||||||||||||
Sbjct: 546 gcttccgggtcctcatcaaaatcaaccccacactc 512
>gb|BI960781.1|BI960781 HVSMEk0016A04f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0016A04f, mRNA sequence
Length = 700
Score = 71.9 bits (36), Expect = 5e-011
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 1063 caggagcctcaatctttt-tagaccccagtatgacatctgactgaataagatcatcacca 1121
||||||| ||||||| || | ||||||| ||| |||||||| ||||| |||||||| |||
Sbjct: 307 caggagcatcaatctgttgtggaccccaatatcacatctgagtgaatgagatcatcgcca 248
Query: 1122 acaatcaaggtgtgatcgccttca 1145
|||||||||||||||| ||||||
Sbjct: 247 gcaatcaaggtgtgatccccttca 224
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1194 tcctcatcaaaatcaaccccacactc 1219
|||||||||| |||||||||||||||
Sbjct: 175 tcctcatcaagatcaaccccacactc 150
>gb|BG368159.1|BG368159 HVSMEi0016A16f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0016A16f, mRNA sequence
Length = 563
Score = 56.0 bits (28), Expect = 3e-006
Identities = 87/110 (79%)
Strand = Plus / Minus
Query: 1110 agatcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntg 1169
|||||||| ||| |||||||||||||||| |||||| || | |||||| ||
Sbjct: 562 agatcatcgccagcaatcaaggtgtgatccccttcagactcagtgnaggcataattaatg 503
Query: 1170 tggtcaataaccattnnnnctggatcctcatcaaaatcaaccccacactc 1219
|||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 502 tggtcaataaccatcgcttccgggtcctcatcaaaatcaaccccacactc 453
>gb|AL505998.1|AL505998 AL505998 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F14T 5',
mRNA sequence
Length = 663
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1194 tcctcatcaaaatcaaccccacactc 1219
||||||||||||||||||||||||||
Sbjct: 590 tcctcatcaaaatcaaccccacactc 565
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,299
Number of Sequences: 312970
Number of extensions: 85299
Number of successful extensions: 22494
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22371
Number of HSP's gapped (non-prelim): 82
length of query: 1263
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1244
effective length of database: 169,188,109
effective search space: 210470007596
effective search space used: 210470007596
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)