BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.444
(1020 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 222 2e-056
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 214 4e-054
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 214 4e-054
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 214 4e-054
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 206 1e-051
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 186 1e-045
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 180 6e-044
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 172 1e-041
gb|CA027544.1|CA027544 HZ59E07r HZ Hordeum vulgare subsp. v... 121 5e-026
gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedl... 111 5e-023
gb|BI950729.1|BI950729 HVSMEl0023A02f Hordeum vulgare spike... 98 7e-019
gb|CB859980.1|CB859980 HI12D15w HI Hordeum vulgare subsp. v... 88 7e-016
gb|BF624942.2|BF624942 HVSMEa0005D17f Hordeum vulgare seedl... 64 1e-008
gb|BF623587.2|BF623587 HVSMEa0002N21f Hordeum vulgare seedl... 56 2e-006
gb|BF621589.2|BF621589 HVSMEa0011I07f Hordeum vulgare seedl... 56 2e-006
gb|BF626711.2|BF626711 HVSMEb0001C08f Hordeum vulgare seedl... 56 2e-006
gb|BG300289.1|BG300289 HVSMEb0011P11f Hordeum vulgare seedl... 56 2e-006
gb|BQ764819.1|BQ764819 EBca01_SQ005_B03_R carpel, pre-anthe... 56 2e-006
gb|BU996997.1|BU996997 HI06J01r HI Hordeum vulgare subsp. v... 56 2e-006
gb|BU997771.1|BU997771 HI08P12r HI Hordeum vulgare subsp. v... 56 2e-006
gb|BU998445.1|BU998445 HI11B10r HI Hordeum vulgare subsp. v... 56 2e-006
gb|BU998807.1|BU998807 HI12D15r HI Hordeum vulgare subsp. v... 56 2e-006
gb|CA020533.1|CA020533 HZ36J15r HZ Hordeum vulgare subsp. v... 56 2e-006
gb|CB858919.1|CB858919 HI08L14w HI Hordeum vulgare subsp. v... 56 2e-006
gb|BF619550.2|BF619550 HVSMEc0004A17f Hordeum vulgare seedl... 50 1e-004
gb|BG416135.1|BG416135 HVSMEk0009O09f Hordeum vulgare testa... 50 1e-004
gb|BI958980.1|BI958980 HVSMEn0017I17f Hordeum vulgare rachi... 50 1e-004
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 48 6e-004
gb|BF618066.2|BF618066 HVSMEc0003K14f Hordeum vulgare seedl... 48 6e-004
gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike... 48 6e-004
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 48 6e-004
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 48 6e-004
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 48 6e-004
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 48 6e-004
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 48 6e-004
gb|BI777552.2|BI777552 EBro04_SQ001_J04_R root, 3 week, sal... 48 6e-004
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 48 6e-004
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 48 6e-004
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 48 6e-004
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 48 6e-004
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 48 6e-004
gb|BF622994.1|BF622994 HVSMEa0012I07f Hordeum vulgare seedl... 46 0.002
gb|BI958584.1|BI958584 HVSMEn0015M01f Hordeum vulgare rachi... 46 0.002
gb|AV912950.1|AV912950 AV912950 K. Sato unpublished cDNA li... 46 0.002
gb|AV917706.1|AV917706 AV917706 K. Sato unpublished cDNA li... 46 0.002
gb|AJ434576.1|AJ434576 AJ434576 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ463257.1|AJ463257 AJ463257 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ463258.1|AJ463258 AJ463258 S00002 Hordeum vulgare subs... 46 0.002
gb|BJ452042.1|BJ452042 BJ452042 K. Sato unpublished cDNA li... 46 0.002
gb|BJ459599.1|BJ459599 BJ459599 K. Sato unpublished cDNA li... 46 0.002
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 46 0.002
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 46 0.002
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 46 0.002
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 46 0.002
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 46 0.002
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 46 0.002
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 46 0.002
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 46 0.002
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 46 0.002
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 46 0.002
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 46 0.002
gb|BU998974.1|BU998974 HI12M10r HI Hordeum vulgare subsp. v... 46 0.002
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA008281.1|CA008281 HU10H13r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 46 0.002
gb|CB882818.1|CB882818 HL02O21w HL Hordeum vulgare subsp. v... 46 0.002
gb|BM097611.2|BM097611 EBem04_SQ002_D07_R embryo, 12 DPA, n... 44 0.009
gb|BF256355.2|BF256355 HVSMEf0009F13f Hordeum vulgare seedl... 42 0.035
gb|BF259925.2|BF259925 HVSMEf0020K05f Hordeum vulgare seedl... 42 0.035
gb|BG344361.2|BG344361 HVSMEg0009A18f Hordeum vulgare pre-a... 42 0.035
gb|AV911446.1|AV911446 AV911446 K. Sato unpublished cDNA li... 42 0.035
gb|AJ434252.1|AJ434252 AJ434252 S00002 Hordeum vulgare subs... 42 0.035
gb|AJ434791.1|AJ434791 AJ434791 S00002 Hordeum vulgare subs... 42 0.035
gb|AJ463490.1|AJ463490 AJ463490 S00002 Hordeum vulgare subs... 42 0.035
gb|AJ463491.1|AJ463491 AJ463491 S00002 Hordeum vulgare subs... 42 0.035
gb|BJ469394.1|BJ469394 BJ469394 K. Sato unpublished cDNA li... 42 0.035
gb|BJ470781.1|BJ470781 BJ470781 K. Sato unpublished cDNA li... 42 0.035
gb|BJ474754.1|BJ474754 BJ474754 K. Sato unpublished cDNA li... 42 0.035
gb|BJ475588.1|BJ475588 BJ475588 K. Sato unpublished cDNA li... 42 0.035
gb|BJ476084.1|BJ476084 BJ476084 K. Sato unpublished cDNA li... 42 0.035
gb|BQ467967.1|BQ467967 HR01H24r HR Hordeum vulgare subsp. v... 42 0.035
gb|BM370011.2|BM370011 EBro08_SQ002_K19_R root, 3 week, dro... 42 0.035
gb|BQ766496.1|BQ766496 EBro08_SQ006_B12_R root, 3 week, dro... 42 0.035
gb|CA020259.1|CA020259 HV14M16r HV Hordeum vulgare subsp. v... 42 0.035
gb|CA029546.1|CA029546 HZ65I13r HZ Hordeum vulgare subsp. v... 42 0.035
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 40 0.14
gb|BE421843.1|BE421843 HWM015cD.02r ITEC HWM Barley Leaf Li... 40 0.14
gb|AL505633.1|AL505633 AL505633 Hordeum vulgare Barke roots... 40 0.14
gb|BF624897.1|BF624897 HVSMEa0005B08f Hordeum vulgare seedl... 40 0.14
gb|BF624396.2|BF624396 HVSMEa0014K13f Hordeum vulgare seedl... 40 0.14
gb|BF255418.3|BF255418 HVSMEf0006M22f Hordeum vulgare seedl... 40 0.14
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 40 0.14
gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA li... 40 0.14
gb|BJ447891.1|BJ447891 BJ447891 K. Sato unpublished cDNA li... 40 0.14
gb|BJ448110.1|BJ448110 BJ448110 K. Sato unpublished cDNA li... 40 0.14
gb|BJ448486.1|BJ448486 BJ448486 K. Sato unpublished cDNA li... 40 0.14
gb|BJ453038.1|BJ453038 BJ453038 K. Sato unpublished cDNA li... 40 0.14
gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA li... 40 0.14
gb|BJ455637.1|BJ455637 BJ455637 K. Sato unpublished cDNA li... 40 0.14
gb|BJ455845.1|BJ455845 BJ455845 K. Sato unpublished cDNA li... 40 0.14
gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA li... 40 0.14
gb|BJ460586.1|BJ460586 BJ460586 K. Sato unpublished cDNA li... 40 0.14
gb|BQ461104.1|BQ461104 HE01D12r HE Hordeum vulgare subsp. v... 40 0.14
gb|BQ467975.1|BQ467975 HR01I11r HR Hordeum vulgare subsp. v... 40 0.14
gb|BM442005.2|BM442005 EBan01_SQ001_K03_R anther, yellow st... 40 0.14
gb|BM442029.2|BM442029 EBan01_SQ001_O03_R anther, yellow st... 40 0.14
gb|BM376778.2|BM376778 EBem05_SQ003_D10_R embryo, 14 DPA, n... 40 0.14
gb|BU972193.1|BU972193 HB20O14r BC Hordeum vulgare subsp. v... 40 0.14
gb|BU978613.1|BU978613 HA13L23r HA Hordeum vulgare subsp. v... 40 0.14
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 40 0.14
gb|CA012183.1|CA012183 HT04L21r HT Hordeum vulgare subsp. v... 40 0.14
gb|CA016183.1|CA016183 HV09O15u HV Hordeum vulgare subsp. v... 40 0.14
gb|CA018876.1|CA018876 HV09O15r HV Hordeum vulgare subsp. v... 40 0.14
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 40 0.14
gb|CD662528.1|CD662528 UCRHV18_02ba05_b1 Drought-stressed D... 40 0.14
>gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. vulgare cDNA clone HI06J01
3-PRIME, mRNA sequence
Length = 641
Score = 222 bits (112), Expect = 2e-056
Identities = 199/228 (87%)
Strand = Plus / Minus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 500 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 441
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtg 521
||| ||||||| |||||| | |||||||||||||||| ||||||||||||||| || |||
Sbjct: 440 gaccttctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgccccctggtg 381
Query: 522 aagggcatcgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtg 581
||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 380 cagggcatcgccgggctcaccgccgcggcgtgcctctgcaccgccatcaaggccaaggtg 321
Query: 582 ctggacatttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|| || | || ||||||||||| |||| || || |||||||||||
Sbjct: 320 ctcaacctcgccctctacgtgcccctcgccctccagctgctcgtcaac 273
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 378 ccgtctcccccgacgcccac 397
||||||||||||||||||||
Sbjct: 539 ccgtctcccccgacgcccac 520
>gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 5', mRNA sequence
Length = 521
Score = 214 bits (108), Expect = 4e-054
Identities = 198/228 (86%)
Strand = Plus / Plus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 12 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 71
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtg 521
||| | ||||| |||||| | |||||||||||||||| ||||||||||||||| || |||
Sbjct: 72 gacctgctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgccccctggtg 131
Query: 522 aagggcatcgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtg 581
||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 132 cagggcatcgccgggctcaccgccgcggcgtgcctctgcaccgccatcaaggccaaggtg 191
Query: 582 ctggacatttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|| || | || ||||||||||| |||| || || |||||||||||
Sbjct: 192 ctcaacctcgccctctacgtgcccctcgccctccagctgctcgtcaac 239
>gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 3', mRNA sequence
Length = 473
Score = 214 bits (108), Expect = 4e-054
Identities = 198/228 (86%)
Strand = Plus / Minus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 462 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 403
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtg 521
||| | ||||| |||||| | |||||||||||||||| ||||||||||||||| || |||
Sbjct: 402 gacctgctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgccccctggtg 343
Query: 522 aagggcatcgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtg 581
||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 342 cagggcatcgccgggctcaccgccgcggcgtgcctctgcaccgccatcaaggccaaggtg 283
Query: 582 ctggacatttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|| || | || ||||||||||| |||| || || |||||||||||
Sbjct: 282 ctcaacctcgccctctacgtgcccctcgccctccagctgctcgtcaac 235
>gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49O19
5-PRIME, mRNA sequence
Length = 514
Score = 214 bits (108), Expect = 4e-054
Identities = 198/228 (86%)
Strand = Plus / Plus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 167 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 226
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtg 521
||| | ||||| |||||| | |||||||||||||||| ||||||||||||||| || |||
Sbjct: 227 gacctgctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgccccctggtg 286
Query: 522 aagggcatcgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtg 581
||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 287 cagggcatcgccgggctcaccgccgcggcgtgcctctgcaccgccatcaaggccaaggtg 346
Query: 582 ctggacatttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|| || | || ||||||||||| |||| || || |||||||||||
Sbjct: 347 ctcaacctcgccctctacgtgcccctcgccctccagctgctcgtcaac 394
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 378 ccgtctcccccgacgcccac 397
||||||||||||||||||||
Sbjct: 128 ccgtctcccccgacgcccac 147
>gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. vulgare cDNA clone HI08P12
3-PRIME, mRNA sequence
Length = 456
Score = 206 bits (104), Expect = 1e-051
Identities = 197/228 (86%)
Strand = Plus / Minus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 447 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 388
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtg 521
||| | ||||| |||||| | |||||||||||||||| ||||||||||||||| || |||
Sbjct: 387 gacctgctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgccccctggtg 328
Query: 522 aagggcatcgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtg 581
||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 327 cagggcatcgccgggctcaccgccgcggcgtacctctgcaccgccatcaaggccaaggtg 268
Query: 582 ctggacatttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|| || | || ||||||||||| |||| || || |||||||||||
Sbjct: 267 ctcaacctcgccctctacgtgcccctcgccctccagctgctcgtcaac 220
>gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B195 5-PRIME, mRNA sequence
Length = 535
Score = 186 bits (94), Expect = 1e-045
Identities = 198/230 (86%), Gaps = 2/230 (0%)
Strand = Plus / Plus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 163 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 222
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctg-cccgctcgt 520
||| | ||||| |||||| | |||||||||||||||| |||||||||||| ||| || ||
Sbjct: 223 gacctgctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgcccccctggt 282
Query: 521 gaagggcatcgccgggctctccgcggcggc-gtgcctgtgcaccgccatcaaggccaagg 579
| ||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 283 gcagggcatcgccgggctcaccgccgcggcggtgcctctgcaccgccatcaaggccaagg 342
Query: 580 tgctggacatttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|||| || | || ||||||||||| |||| || || |||||||||||
Sbjct: 343 tgctcaacctcgccctctacgtgcccctcgccctccagctgctcgtcaac 392
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 378 ccgtctcccccgacgcccac 397
||||||||||||||||||||
Sbjct: 124 ccgtctcccccgacgcccac 143
>gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B10
3-PRIME, mRNA sequence
Length = 538
Score = 180 bits (91), Expect = 6e-044
Identities = 142/159 (89%)
Strand = Plus / Minus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggacattctcgggaacgaggtgca 484
|||||| |||||| |||||||||| |||| |||| ||||| | ||||| |||||| | ||
Sbjct: 535 gtgcccgatcgacacgctgaagctgggcgtgtgcctggacctgctcggcaacgagctcca 476
Query: 485 catcggcgacgccaacgtcaagtgctgcccgctcgtgaagggcatcgccgggctctccgc 544
|||||||||||||| ||||||||||||||| || ||| ||||||||||||||||| ||||
Sbjct: 475 catcggcgacgccagcgtcaagtgctgccccctggtgcagggcatcgccgggctcaccgc 416
Query: 545 ggcggcgtgcctgtgcaccgccatcaaggccaaggtgct 583
||||||||||| ||||||||||||||||||||||||||
Sbjct: 415 cgcggcgtgcctctgcaccgccatcaaggccaaggtgct 377
>gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.C09, mRNA sequence
Length = 1035
Score = 172 bits (87), Expect = 1e-041
Identities = 165/191 (86%)
Strand = Plus / Plus
Query: 439 cgctgaagctcggcgcgtgcgtggacattctcgggaacgaggtgcacatcggcgacgcca 498
|||||||||| |||| |||| ||||| | ||||| |||||| | ||||||||||||||||
Sbjct: 157 cgctgaagctgggcgtgtgcctggacctgctcggcaacgagctccacatcggcgacgcca 216
Query: 499 acgtcaagtgctgcccgctcgtgaagggcatcgccgggctctccgcggcggcgtgcctgt 558
||||||||||||||| || ||| ||||||||||||||||| |||| ||||||||||| |
Sbjct: 217 gcgtcaagtgctgccccctggtgcagggcatcgccgggctcaccgccgcggcgtgcctct 276
Query: 559 gcaccgccatcaaggccaaggtgctggacatttccgtctacgtgcccatcgcgctggagg 618
||||||||||||||||||||||||| || | || ||||||||||| |||| || ||
Sbjct: 277 gcaccgccatcaaggccaaggtgctcaacctcgccctctacgtgcccctcgccctccagc 336
Query: 619 tgctcgtcaac 629
|||||||||||
Sbjct: 337 tgctcgtcaac 347
>gb|CA027544.1|CA027544 HZ59E07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59E07
5-PRIME, mRNA sequence
Length = 287
Score = 121 bits (61), Expect = 5e-026
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
||||||||||||||||| |||| |||||| |||||| |||||||||| |||| |||| ||
Sbjct: 167 acgcccacgccgtcctccgacacgtgcccgatcgacacgctgaagctgggcgtgtgcctg 226
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgccc 514
||| | ||||| |||||| | |||||||||||||||| |||||||||||||||
Sbjct: 227 gacctgctcggcaacgagctccacatcggcgacgccagcgtcaagtgctgccc 279
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 378 ccgtctcccccgacgcccac 397
||||||||||||||||||||
Sbjct: 128 ccgtctcccccgacgcccac 147
>gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006N23f, mRNA sequence
Length = 739
Score = 111 bits (56), Expect = 5e-023
Identities = 134/160 (83%)
Strand = Plus / Plus
Query: 420 gacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtggacattctcgggaacgag 479
|||| |||||| |||||| | ||||| || |||| |||| ||||| | ||| | ||| ||
Sbjct: 8 gacacgtgcccgatcgacaccctgaaactgggcgtgtgcctggacctgctcagcaacaag 67
Query: 480 gtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtgaagggcatcgccgggctc 539
| |||||||||||| ||| |||||||||||| || || ||| |||||||||||||||||
Sbjct: 68 ctccacatcggcgacaccagcgtcaagtgctggcccctggtgcagggcatcgccgggctc 127
Query: 540 tccgcggcggcgtgcctgtgcaccgccatcaaggccaagg 579
|||| ||||||||||| ||||||| ||||| ||||||||
Sbjct: 128 accgccgcggcgtgcctctgcaccgacatcacggccaagg 167
>gb|BI950729.1|BI950729 HVSMEl0023A02f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023A02f, mRNA sequence
Length = 990
Score = 97.6 bits (49), Expect = 7e-019
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 402 acgcccacgccgtcctcggacaagtgccccatcgacgcgctgaagctcggcgcgtgcgtg 461
|||||||||||||||| |||| |||| | |||||| |||||||||| |||| |||| ||
Sbjct: 208 acgcccacgccgtccttcgacacgtgcacgatcgacacgctgaagctgggcgtgtgcctg 267
Query: 462 gacattctcgggaacgaggtgcacatcggcgacgccaacgtcaagtgctgccc 514
||| | ||||| ||||| | |||||||||||||||| |||||||||||||||
Sbjct: 268 gacctgctcggcaacgaactccacatcggcgacgccagcgtcaagtgctgccc 320
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 378 ccgtctcccccgacgcccac 397
||||||||||||||||||||
Sbjct: 169 ccgtctcccccgacgcccac 188
>gb|CB859980.1|CB859980 HI12D15w HI Hordeum vulgare subsp. vulgare cDNA clone HI12D15
3-PRIME, mRNA sequence
Length = 430
Score = 87.7 bits (44), Expect = 7e-016
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 530 cgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtgctggacat 589
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |
Sbjct: 430 cgccgggctcaccgccgcggcgtgcctctgcaccgccatcaaggccaaggtgctcaacct 371
Query: 590 ttccgtctacgtgcccatcgcgctggaggtgctcgtcaac 629
|| ||||||||||| |||| || || |||||||||||
Sbjct: 370 cgccctctacgtgcccctcgccctccagctgctcgtcaac 331
>gb|BF624942.2|BF624942 HVSMEa0005D17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0005D17f, mRNA sequence
Length = 889
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||||||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 50 gcaatggactccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 109
>gb|BF623587.2|BF623587 HVSMEa0002N21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002N21f, mRNA sequence
Length = 906
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 42 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 101
>gb|BF621589.2|BF621589 HVSMEa0011I07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011I07f, mRNA sequence
Length = 744
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 46 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 105
>gb|BF626711.2|BF626711 HVSMEb0001C08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001C08f, mRNA sequence
Length = 864
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 44 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 103
>gb|BG300289.1|BG300289 HVSMEb0011P11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011P11f, mRNA sequence
Length = 525
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 50 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgagctctcctcg 109
>gb|BQ764819.1|BQ764819 EBca01_SQ005_B03_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_B03 5', mRNA sequence
Length = 411
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 51 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 110
>gb|BU996997.1|BU996997 HI06J01r HI Hordeum vulgare subsp. vulgare cDNA clone HI06J01
5-PRIME, mRNA sequence
Length = 514
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 62 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 121
>gb|BU997771.1|BU997771 HI08P12r HI Hordeum vulgare subsp. vulgare cDNA clone HI08P12
5-PRIME, mRNA sequence
Length = 606
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 44 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 103
>gb|BU998445.1|BU998445 HI11B10r HI Hordeum vulgare subsp. vulgare cDNA clone HI11B10
5-PRIME, mRNA sequence
Length = 507
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 58 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 117
>gb|BU998807.1|BU998807 HI12D15r HI Hordeum vulgare subsp. vulgare cDNA clone HI12D15
5-PRIME, mRNA sequence
Length = 540
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 62 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 121
>gb|CA020533.1|CA020533 HZ36J15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J15
5-PRIME, mRNA sequence
Length = 439
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||||||||||
Sbjct: 48 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 107
>gb|CB858919.1|CB858919 HI08L14w HI Hordeum vulgare subsp. vulgare cDNA clone HI08L14
3-PRIME, mRNA sequence
Length = 396
Score = 56.0 bits (28), Expect = 2e-006
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 558 tgcaccgccatcaaggccaaggtgctggacatttccgtctacgtgcccatcgcgctggag 617
|||||||||||||||||||||||||| || | || ||||||||||| |||| || ||
Sbjct: 392 tgcaccgccatcaaggccaaggtgctcaacctcgccctctacgtgcccctcgccctccag 333
Query: 618 gtgctcgtcaac 629
|||||||||||
Sbjct: 332 ctgctcgtcaac 321
>gb|BF619550.2|BF619550 HVSMEc0004A17f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0004A17f, mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 1e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| | ||||||||||||| || |||||||||| ||| ||||||
Sbjct: 24 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctntcctcg 83
>gb|BG416135.1|BG416135 HVSMEk0009O09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009O09f, mRNA sequence
Length = 749
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 388 cgacgcccacgcccacgcccacgcc 412
|||||||||||||||||||||||||
Sbjct: 103 cgacgcccacgcccacgcccacgcc 127
Score = 42.1 bits (21), Expect = 0.035
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 390 acgcccacgcccacgcccacg 410
|||||||||||||||||||||
Sbjct: 111 acgcccacgcccacgcccacg 131
>gb|BI958980.1|BI958980 HVSMEn0017I17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017I17f, mRNA sequence
Length = 610
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 388 cgacgcccacgcccacgcccacgcc 412
|||||||||||||||||||||||||
Sbjct: 451 cgacgcccacgcccacgcccacgcc 475
Score = 42.1 bits (21), Expect = 0.035
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 390 acgcccacgcccacgcccacg 410
|||||||||||||||||||||
Sbjct: 459 acgcccacgcccacgcccacg 479
>gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01V 5',
mRNA sequence
Length = 657
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 428 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 467
>gb|BF618066.2|BF618066 HVSMEc0003K14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003K14f, mRNA sequence
Length = 778
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 54 gcaatggactccaccaagttatccgcgctgctggcgctcgccatgctcgcgctctcctcg 113
|||||||| ||||| ||| ||||||||||||| || |||||||||| ||||||||||
Sbjct: 36 gcaatggagtccacgaagggctccgcgctgctggttctggccatgctcgtgctctcctcg 95
>gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024F18f, mRNA sequence
Length = 855
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 334 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 373
>gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
5-PRIME, mRNA sequence
Length = 552
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 282 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 321
>gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. vulgare cDNA clone HA02A21
3-PRIME, mRNA sequence
Length = 570
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 514 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 475
>gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_F02 5', mRNA sequence
Length = 574
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 383 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 422
>gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_M19 5', mRNA sequence
Length = 548
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 116 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 155
>gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N09 5', mRNA sequence
Length = 606
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 91 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 130
>gb|BI777552.2|BI777552 EBro04_SQ001_J04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_J04 5', mRNA sequence
Length = 349
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 552 tgcctgtgcaccgccatcaaggccaaggtgct 583
||||| |||||||||||||||||||| |||||
Sbjct: 60 tgcctttgcaccgccatcaaggccaacgtgct 91
>gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E06 5', mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 95 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 134
>gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L21
5-PRIME, mRNA sequence
Length = 495
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 91 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 130
>gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K04
5-PRIME, mRNA sequence
Length = 557
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 231 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 270
>gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A02
5-PRIME, mRNA sequence
Length = 563
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 157 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 196
>gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42K16
5-PRIME, mRNA sequence
Length = 640
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 313 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 352
>gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G24
5-PRIME, mRNA sequence
Length = 554
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 323 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 362
>gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D113 5-PRIME, mRNA sequence
Length = 585
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 425 gtgccccatcgacgcgctgaagctcggcgcgtgcgtggac 464
|||||| ||||||||||||||||| |||||||||||||
Sbjct: 148 gtgcccgatcgacgcgctgaagctgaacgcgtgcgtggac 187
>gb|BF622994.1|BF622994 HVSMEa0012I07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012I07f, mRNA sequence
Length = 802
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 387 ccgacgcccacgcccacgcccacgccgtcct 417
|||||||| |||||||| |||||||||||||
Sbjct: 598 ccgacgccgacgcccactcccacgccgtcct 628
>gb|BI958584.1|BI958584 HVSMEn0015M01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015M01f, mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 390 acgcccacgcccacgcccacgcc 412
|||||||||||||||||||||||
Sbjct: 8 acgcccacgcccacgcccacgcc 30
Score = 42.1 bits (21), Expect = 0.035
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 392 gcccacgcccacgcccacgcc 412
|||||||||||||||||||||
Sbjct: 4 gcccacgcccacgcccacgcc 24
>gb|AV912950.1|AV912950 AV912950 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11b23 5', mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 551 gtgcctgtgcaccgccatcaaggccaa 577
|||||| ||||||||||||||||||||
Sbjct: 321 gtgcctctgcaccgccatcaaggccaa 347
>gb|AV917706.1|AV917706 AV917706 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11b23 3', mRNA sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 551 gtgcctgtgcaccgccatcaaggccaa 577
|||||| ||||||||||||||||||||
Sbjct: 345 gtgcctctgcaccgccatcaaggccaa 319
>gb|AJ434576.1|AJ434576 AJ434576 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200077B04F1, mRNA sequence
Length = 486
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 551 gtgcctgtgcaccgccatcaaggccaa 577
|||||| ||||||||||||||||||||
Sbjct: 94 gtgcctctgcaccgccatcaaggccaa 120
>gb|AJ463257.1|AJ463257 AJ463257 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028D03F1, mRNA sequence
Length = 360
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 551 gtgcctgtgcaccgccatcaaggccaa 577
|||||| ||||||||||||||||||||
Sbjct: 184 gtgcctctgcaccgccatcaaggccaa 210
>gb|AJ463258.1|AJ463258 AJ463258 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028D03F2, mRNA sequence
Length = 420
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 551 gtgcctgtgcaccgccatcaaggccaa 577
|||||| ||||||||||||||||||||
Sbjct: 184 gtgcctctgcaccgccatcaaggccaa 210
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,252
Number of Sequences: 312970
Number of extensions: 140252
Number of successful extensions: 40107
Number of sequences better than 0.5: 124
Number of HSP's better than 0.5 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39751
Number of HSP's gapped (non-prelim): 322
length of query: 1020
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1001
effective length of database: 169,188,109
effective search space: 169357297109
effective search space used: 169357297109
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)