BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.288
(1775 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ452117.1|BJ452117 BJ452117 K. Sato unpublished cDNA li... 490 e-137
gb|BU987740.1|BU987740 HF15K04r HF Hordeum vulgare subsp. v... 484 e-135
gb|BU999438.1|BU999438 HI14I08r HI Hordeum vulgare subsp. v... 472 e-131
gb|BU997209.1|BU997209 HI07E04r HI Hordeum vulgare subsp. v... 464 e-129
gb|CV063418.1|CV063418 BNEL8B1 Barley EST endosperm library... 462 e-128
gb|CB875665.1|CB875665 HX08P22w HX Hordeum vulgare subsp. v... 440 e-122
gb|BU982643.1|BU982643 HA27C18r HA Hordeum vulgare subsp. v... 432 e-119
gb|BF261152.2|BF261152 HVSMEf0023O08f Hordeum vulgare seedl... 430 e-119
gb|AL507857.1|AL507857 AL507857 Hordeum vulgare Barke devel... 426 e-117
gb|BJ459673.1|BJ459673 BJ459673 K. Sato unpublished cDNA li... 420 e-116
gb|BG343577.2|BG343577 HVSMEg0006H01f Hordeum vulgare pre-a... 410 e-113
gb|AV921789.1|AV921789 AV921789 K. Sato unpublished cDNA li... 406 e-111
gb|CA021101.1|CA021101 HZ39B21r HZ Hordeum vulgare subsp. v... 400 e-110
gb|AV912123.1|AV912123 AV912123 K. Sato unpublished cDNA li... 391 e-107
gb|AV912409.1|AV912409 AV912409 K. Sato unpublished cDNA li... 391 e-107
gb|AV918303.1|AV918303 AV918303 K. Sato unpublished cDNA li... 389 e-106
gb|AV919781.1|AV919781 AV919781 K. Sato unpublished cDNA li... 389 e-106
gb|CV058984.1|CV058984 BNEL43b2 Barley EST endosperm librar... 387 e-106
gb|AV910025.1|AV910025 AV910025 K. Sato unpublished cDNA li... 383 e-104
gb|BU984047.1|BU984047 HA31N09r HA Hordeum vulgare subsp. v... 383 e-104
gb|AV917048.1|AV917048 AV917048 K. Sato unpublished cDNA li... 373 e-101
gb|CB858496.1|CB858496 HI07E04w HI Hordeum vulgare subsp. v... 371 e-101
gb|AV914689.1|AV914689 AV914689 K. Sato unpublished cDNA li... 369 e-100
gb|BI953854.1|BI953854 HVSMEm0015A11f Hordeum vulgare green... 367 e-100
gb|AV910248.1|AV910248 AV910248 K. Sato unpublished cDNA li... 367 e-100
gb|BQ753662.1|BQ753662 EBan01_SQ004_O05_R anther, yellow st... 367 e-100
gb|CB883383.1|CB883383 HQ02B08w HQ Hordeum vulgare subsp. v... 365 3e-099
gb|BF261168.2|BF261168 HVSMEf0023O24f Hordeum vulgare seedl... 351 5e-095
gb|BG368159.1|BG368159 HVSMEi0016A16f Hordeum vulgare 20 DA... 327 7e-088
gb|AL509103.1|AL509103 AL509103 Hordeum vulgare Barke devel... 321 4e-086
gb|AL505998.1|AL505998 AL505998 Hordeum vulgare Barke devel... 297 6e-079
gb|BI950887.1|BI950887 HVSMEl0023I15f Hordeum vulgare spike... 293 1e-077
gb|AV919937.1|AV919937 AV919937 K. Sato unpublished cDNA li... 291 4e-077
gb|BG415601.1|BG415601 HVSMEk0007C11f Hordeum vulgare testa... 260 1e-067
gb|BG418692.2|BG418692 HVSMEk0024A01f Hordeum vulgare testa... 248 5e-064
gb|AL511118.1|AL511118 AL511118 Hordeum vulgare Barke devel... 242 3e-062
gb|CA032662.1|CA032662 HX13N04r HX Hordeum vulgare subsp. v... 236 2e-060
gb|AV916355.1|AV916355 AV916355 K. Sato unpublished cDNA li... 210 1e-052
gb|BI777078.2|BI777078 EBpi03_SQ001_N08_R pistil, 4 DPA, no... 206 2e-051
gb|BU980621.1|BU980621 HA21D03r HA Hordeum vulgare subsp. v... 202 3e-050
gb|AL509299.1|AL509299 AL509299 Hordeum vulgare Barke devel... 163 2e-038
gb|BM440990.2|BM440990 EBed02_SQ002_B18_R endosperm, 8 DPA,... 147 1e-033
gb|BI960781.1|BI960781 HVSMEk0016A04f Hordeum vulgare testa... 113 2e-023
gb|AL503708.1|AL503708 AL503708 Hordeum vulgare Barke roots... 44 0.016
gb|AL508467.1|AL508467 AL508467 Hordeum vulgare Barke devel... 44 0.016
gb|BI956594.1|BI956594 HVSMEn0004F06f Hordeum vulgare rachi... 44 0.016
gb|BF628758.3|BF628758 HVSMEb0007O03f Hordeum vulgare seedl... 44 0.016
gb|BQ466754.1|BQ466754 HS01H18T HS Hordeum vulgare subsp. v... 44 0.016
gb|BQ466863.1|BQ466863 HS01N05T HS Hordeum vulgare subsp. v... 44 0.016
gb|BQ467067.1|BQ467067 HS02H18r HS Hordeum vulgare subsp. v... 44 0.016
gb|BI779529.2|BI779529 EBro01_SQ004_F06_R root, 3 week, hyd... 44 0.016
gb|CA008774.1|CA008774 HU12A24r HU Hordeum vulgare subsp. v... 44 0.016
gb|CA025978.1|CA025978 HZ53L12r HZ Hordeum vulgare subsp. v... 44 0.016
gb|CA028642.1|CA028642 HZ62M03r HZ Hordeum vulgare subsp. v... 44 0.016
gb|AL503237.1|AL503237 AL503237 Hordeum vulgare Barke roots... 40 0.25
gb|AL504286.1|AL504286 AL504286 Hordeum vulgare Barke roots... 40 0.25
gb|AL505209.1|AL505209 AL505209 Hordeum vulgare Barke roots... 40 0.25
gb|BF628055.2|BF628055 HVSMEb0003A06f Hordeum vulgare seedl... 40 0.25
gb|BF629612.2|BF629612 HVSMEb0013I12f Hordeum vulgare seedl... 40 0.25
gb|BE195158.2|BE195158 HVSMEh0088H07f Hordeum vulgare 5-45 ... 40 0.25
gb|BG367902.1|BG367902 HVSMEi0014H16f Hordeum vulgare 20 DA... 40 0.25
gb|BE558299.1|BE558299 HV_CEb0017B24f Hordeum vulgare seedl... 40 0.25
gb|BE215523.2|BE215523 HV_CEb0008A17f Hordeum vulgare seedl... 40 0.25
gb|BE216891.2|BE216891 HV_CEb0011P10f Hordeum vulgare seedl... 40 0.25
gb|BG367967.2|BG367967 HVSMEi0015B13f Hordeum vulgare 20 DA... 40 0.25
gb|BG368956.2|BG368956 HVSMEi0021I08f Hordeum vulgare 20 DA... 40 0.25
gb|BF064471.3|BF064471 HV_CEb0015E06f Hordeum vulgare seedl... 40 0.25
gb|AV915588.1|AV915588 AV915588 K. Sato unpublished cDNA li... 40 0.25
gb|AV916491.1|AV916491 AV916491 K. Sato unpublished cDNA li... 40 0.25
gb|AV916692.1|AV916692 AV916692 K. Sato unpublished cDNA li... 40 0.25
gb|AV917282.1|AV917282 AV917282 K. Sato unpublished cDNA li... 40 0.25
gb|AV932123.1|AV932123 AV932123 K. Sato unpublished cDNA li... 40 0.25
gb|AV933916.1|AV933916 AV933916 K. Sato unpublished cDNA li... 40 0.25
gb|BJ462956.1|BJ462956 BJ462956 K. Sato unpublished cDNA li... 40 0.25
gb|BJ465112.1|BJ465112 BJ465112 K. Sato unpublished cDNA li... 40 0.25
gb|BJ469968.1|BJ469968 BJ469968 K. Sato unpublished cDNA li... 40 0.25
gb|BJ470820.1|BJ470820 BJ470820 K. Sato unpublished cDNA li... 40 0.25
gb|BQ459587.1|BQ459587 HA08K16r HA Hordeum vulgare subsp. v... 40 0.25
gb|BQ460208.1|BQ460208 HA06O20r HA Hordeum vulgare subsp. v... 40 0.25
gb|BQ460435.1|BQ460435 HA09K11r HA Hordeum vulgare subsp. v... 40 0.25
gb|BQ465084.1|BQ465084 HU02J16r HU Hordeum vulgare subsp. v... 40 0.25
gb|BM441954.2|BM441954 EBan01_SQ001_B04_R anther, yellow st... 40 0.25
gb|BM442205.2|BM442205 EBan01_SQ002_I10_R anther, yellow st... 40 0.25
gb|BM440883.2|BM440883 EBca01_SQ001_J20_R carpel, pre-anthe... 40 0.25
gb|BI776227.2|BI776227 EBem04_SQ001_B03_R embryo, 12 DPA, n... 40 0.25
gb|BM099668.2|BM099668 EBes01_SQ003_O08_R embryo sac, 4-6 D... 40 0.25
gb|BQ765487.1|BQ765487 EBro03_SQ007_F10_R root, 3 week, wat... 40 0.25
gb|BU968840.1|BU968840 HB08M02r BC Hordeum vulgare subsp. v... 40 0.25
gb|BU971021.1|BU971021 HB16G03r BC Hordeum vulgare subsp. v... 40 0.25
gb|BU973634.1|BU973634 HB25I15r BC Hordeum vulgare subsp. v... 40 0.25
gb|BU976560.1|BU976560 HA03O14r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU978539.1|BU978539 HA13I12r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU980332.1|BU980332 HA20F19r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU980694.1|BU980694 HA21G16r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU981834.1|BU981834 HA24M11r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU982994.1|BU982994 HA28D16r HA Hordeum vulgare subsp. v... 40 0.25
gb|BU984615.1|BU984615 HF04H06r HF Hordeum vulgare subsp. v... 40 0.25
gb|BU986912.1|BU986912 HF13E08r HF Hordeum vulgare subsp. v... 40 0.25
gb|BU989759.1|BU989759 HF22J24r HF Hordeum vulgare subsp. v... 40 0.25
gb|BU990044.1|BU990044 HF23N18r HF Hordeum vulgare subsp. v... 40 0.25
gb|BU990515.1|BU990515 HF25E13r HF Hordeum vulgare subsp. v... 40 0.25
gb|BU990759.1|BU990759 HF25P17r HF Hordeum vulgare subsp. v... 40 0.25
gb|CA003958.1|CA003958 HS16C02r HS Hordeum vulgare subsp. v... 40 0.25
gb|CA004774.1|CA004774 HS18K12r HS Hordeum vulgare subsp. v... 40 0.25
gb|CA006999.1|CA006999 HU06G07r HU Hordeum vulgare subsp. v... 40 0.25
gb|CA013681.1|CA013681 HT09D03r HT Hordeum vulgare subsp. v... 40 0.25
gb|CA019077.1|CA019077 HV10K21r HV Hordeum vulgare subsp. v... 40 0.25
gb|CA022091.1|CA022091 HZ42C07r HZ Hordeum vulgare subsp. v... 40 0.25
gb|CA028913.1|CA028913 HZ63J22r HZ Hordeum vulgare subsp. v... 40 0.25
gb|CA029191.1|CA029191 HZ64H19r HZ Hordeum vulgare subsp. v... 40 0.25
gb|CB858824.1|CB858824 HI08H03w HI Hordeum vulgare subsp. v... 40 0.25
gb|CB882533.1|CB882533 HL02C07w HL Hordeum vulgare subsp. v... 40 0.25
gb|CB882560.1|CB882560 HL02D10w HL Hordeum vulgare subsp. v... 40 0.25
gb|CB882648.1|CB882648 HL02H13w HL Hordeum vulgare subsp. v... 40 0.25
gb|CB883263.1|CB883263 HQ01L02w HQ Hordeum vulgare subsp. v... 40 0.25
gb|CV054979.1|CV054979 BNEL115d9 Barley EST endosperm libra... 40 0.25
gb|CV059646.1|CV059646 BNEL4D5 Barley EST endosperm library... 40 0.25
gb|CV062267.1|CV062267 BNEL78b4 Barley EST endosperm librar... 40 0.25
gb|CK124549.1|CK124549 BES1824109i06 BES1824 Hordeum vulgar... 40 0.25
>gb|BJ452117.1|BJ452117 BJ452117 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak37n09 5', mRNA sequence
Length = 652
Score = 490 bits (247), Expect = e-137
Identities = 514/603 (85%)
Strand = Plus / Plus
Query: 533 tgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtgatactagg 592
|||||| |||||||||||||||||||| || ||||| || || || ||||||||| | ||
Sbjct: 46 tgaaggggatcacaccttgattgctggcgatgatctgattcagtcagatgtgatattggg 105
Query: 593 gtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccatc 652
||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 106 gtccaaaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccatc 165
Query: 653 aaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaa 712
||||| |||||| ||||||||||||| ||||| || || || |||||||| || ||
Sbjct: 166 caacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccggg 225
Query: 713 gactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggttat 772
||||||||| || || |||||| ||||| ||||| || |||||| ||||||| |||||
Sbjct: 226 gactaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgttat 285
Query: 773 gcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccg 832
|||||| || || |||||||| ||| || ||||||||||||| ||| ||||||||||| |
Sbjct: 286 gcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaacag 345
Query: 833 gttcctgaagtctggtgttcaaaaggctgatagcaaaacaagatatgagagagctggaaa 892
|||||| ||||||||||| || ||||| | ||||||| || |||| | |||||||||
Sbjct: 346 gttcctcaagtctggtgtgcagaaggcaggcagcaaaatgagccatgacaaagctggaaa 405
Query: 893 cgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggc 952
|| ||||||||| |||||| |||||||||||| |||||||||||||| ||||| |||||
Sbjct: 406 tgaacaatttgtgacagagacaagcaaatgggtcttccatgagaggggtcatctgaaggc 465
Query: 953 tgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaa 1012
|| ||||| ||||| || |||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 466 agtgaatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgcatcaa 525
Query: 1013 tgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgta 1072
||||||| |||||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct: 526 tgatgacttggaatactcagttgagatatacgaatggtctggaacaagctggaagccata 585
Query: 1073 tgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaaactat 1132
|||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||| |||
Sbjct: 586 tgttgccgatgatgttcagattcagtttttcatgatgagcccttacgttctgaaaaatat 645
Query: 1133 gtc 1135
|||
Sbjct: 646 gtc 648
>gb|BU987740.1|BU987740 HF15K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF15K04
5-PRIME, mRNA sequence
Length = 620
Score = 484 bits (244), Expect = e-135
Identities = 505/592 (85%)
Strand = Plus / Plus
Query: 544 acaccttgattgctggtgacgatcttatccattcggatgtgatactagggtctgaaaaga 603
|||||||||||||||| || ||||| || || || ||||||||| | ||||| ||||||
Sbjct: 24 acaccttgattgctggcgatgatctgattcagtcagatgtgatattggggtccaaaaaga 83
Query: 604 ttgaggctcctgtattgtttcgaggaattggacacatggctaatccatcaaacagtttgg 663
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||| ||||
Sbjct: 84 ttgaggctcctgtattgtttcgagggattggacatgcggccaatccatccaacagcttgg 143
Query: 664 ttctgaaggttctatcagcctctccatcagcatattcagctaatccaaagactaagttag 723
|| ||||||||||||| ||||| || || || |||||||| || ||| ||||||||| |
Sbjct: 144 ttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagggactaagttgg 203
Query: 724 cgtctcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaagaa 783
| || |||||| ||||| ||||| || |||||| ||||||| ||||||||||| || |
Sbjct: 204 catccgttccatctctcacagggtcggccatatcactggtttctgttatgcaggctagga 263
Query: 784 ataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccggttcctgaagt 843
| |||||||| ||| || ||||||||||||| ||| ||||||||||| ||||||| ||||
Sbjct: 264 acaatgctcgtgtgttgatatctggatcactggatttgtttagcaacaggttcctcaagt 323
Query: 844 ctggtgttcaaaaggctgatagcaaaacaagatatgagagagctggaaacgagcaatttg 903
||||||| || ||||| | ||||||| || |||| | ||||||||| || |||||||
Sbjct: 324 ctggtgtgcagaaggcaggcagcaaaatgagccatgacaaagctggaaatgaacaatttg 383
Query: 904 tggcagagataagcaaatgggttttccatgagaggggacatctaaaggctgttaatgtta 963
|| |||||| |||||||||||| |||||||||||||| ||||| ||||| || ||||| |
Sbjct: 384 tgacagagacaagcaaatgggtcttccatgagaggggtcatctgaaggcagtgaatgtca 443
Query: 964 ggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctgg 1023
|||| || |||||||||||||| ||||||| ||||||||||||| ||||||||| |||
Sbjct: 444 ggcaccataaggttggggagacagatgaacctagcatgtaccgcatcaatgatgacttgg 503
Query: 1024 aatactctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatg 1083
||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 504 aatactcagttgagatatacgaatggtctggaacaagctggaagccatatgttgccgatg 563
Query: 1084 atgtgcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtc 1135
|||| ||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 atgttcagattcagtttttcatgatgagcccttacgttctgaaaaatatgtc 615
>gb|BU999438.1|BU999438 HI14I08r HI Hordeum vulgare subsp. vulgare cDNA clone HI14I08
5-PRIME, mRNA sequence
Length = 644
Score = 472 bits (238), Expect = e-131
Identities = 502/589 (85%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 533 tgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtgatactagg 592
|||||| |||||||||||||||||||| || ||||| || || || ||||||||| | ||
Sbjct: 56 tgaaggggatcacaccttgattgctggcgatgatctgattcagtcagatgtgatattggg 115
Query: 593 gtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccatc 652
||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 116 gtccaaaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccatc 175
Query: 653 aaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaa 712
||||| |||||| ||||||||||||| ||||| || || || |||||||| || |||
Sbjct: 176 caacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagg 235
Query: 713 gactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggttat 772
||||||||| || || |||||| ||||| ||||| || |||||| ||||||| |||||
Sbjct: 236 gactaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgttat 295
Query: 773 gcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccg 832
|||||| || || |||||||| ||| || ||||||||||||| ||| ||||||||||| |
Sbjct: 296 gcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaacag 355
Query: 833 gttcctgaagtctggtgttcaaaaggctgatagcaaaacaagatatgagagagctggaaa 892
|||||| ||||||||||| || ||||| | ||||||| || |||| | |||||||||
Sbjct: 356 gttcctcaagtctggtgtgcagaaggcaggcagcaaaatgagccatgacaaagctggaaa 415
Query: 893 cgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggc 952
|| ||||||||| |||||| |||||||||||| |||||||||||||| ||||| |||||
Sbjct: 416 tgaacaatttgtgacagagacaagcaaatgggtcttccatgagaggggtcatctgaaggc 475
Query: 953 tgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaa 1012
|| ||||| ||||| || |||||||||||||| ||||||| |||||||||||||| ||
Sbjct: 476 agtgaatgtcaggcaccataaggttggggagacagatgaacctggcatgtaccgcatcaa 535
Query: 1013 tgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgta 1072
||||||| |||||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct: 536 tgatgacttggaatactcagttgagatatacgaatggtctggaacaagctggaagccata 595
Query: 1073 tgttg-ctgatgatgtgcagcttcaatttttcatgatgagcccttacgt 1120
||||| | |||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 596 tgttgccngatgatgttcagattcagtttttcatgatgagcccttacgt 644
>gb|BU997209.1|BU997209 HI07E04r HI Hordeum vulgare subsp. vulgare cDNA clone HI07E04
5-PRIME, mRNA sequence
Length = 660
Score = 464 bits (234), Expect = e-129
Identities = 528/626 (84%)
Strand = Plus / Plus
Query: 183 gacgacctggccgtgcggtcgtcgcactcggccttcttcggctcgctccaggcgcgcggg 242
||||| |||||||| || || || ||||||||||||||||||||||||||||| ||||||
Sbjct: 35 gacgatctggccgtccgctcctcccactcggccttcttcggctcgctccaggcccgcggg 94
Query: 243 ttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctacggccag 302
| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 95 ctagatctggagttccgcctcgcggacgaccccaagctctcgctccaccgctacggtcag 154
Query: 303 tacctctacgacggcctcgtgctcttcgccccctccacaccacgttttggtggatcagtg 362
|||||||||||||||||||| ||||||||||| || || || || ||||| ||||| |||
Sbjct: 155 tacctctacgacggcctcgtcctcttcgccccgtcgaccccgcgctttggcggatcggtg 214
Query: 363 gaccagaacgcagtcctcgaatttattgatgctgggcatgacatgatcctggcggcagat 422
||||||||||| || || || || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 215 gaccagaacgctgttctggagttcatcgatgctgggcacgacatgattctggcagcagat 274
Query: 423 tcctctgcctctgatctcattcgtggcattgcaacagagtgtggggttgattttgatgag 482
|| || |||||||| || || ||||| ||||| ||||||||||||||||||||||||
Sbjct: 275 cattcggcttctgatctgatccgcggcatcgcaaccgagtgtggggttgattttgatgag 334
Query: 483 gatccagaggcaatggttattgaccatatgaactatgccgtcacagatgttgaaggtgat 542
|| || || || |||||||||||||| || || |||||| ||| || |||||| |||
Sbjct: 335 gacccggaagcgatggttattgaccacattaattatgcctccactgagtctgaaggggat 394
Query: 543 cacaccttgattgctggtgacgatcttatccattcggatgtgatactagggtctgaaaag 602
||||||||||||||||| || ||||| || || || ||||||||| | ||||| |||||
Sbjct: 395 cacaccttgattgctggcgatgatctgattcagtcagatgtgatattggggtccaaaaag 454
Query: 603 attgaggctcctgtattgtttcgaggaattggacacatggctaatccatcaaacagtttg 662
|||||||||||||||||||||||||| |||||||| ||| |||||||| ||||| |||
Sbjct: 455 attgaggctcctgtattgtttcgagggattggacatgcggccaatccatccaacagcttg 514
Query: 663 gttctgaaggttctatcagcctctccatcagcatattcagctaatccaaagactaagtta 722
||| ||||||||||||| ||||| || || || |||||||| || ||| |||||||||
Sbjct: 515 gttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagggactaagttg 574
Query: 723 gcgtctcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaaga 782
|| || |||||| ||||| ||||| || |||||| ||||||| ||||||||||| ||
Sbjct: 575 gcatccgttccatctctcacagggtcggccatatcactggtttctgttatgcaggctagg 634
Query: 783 aataatgctcgggtgctgttatctgg 808
|| |||||||| ||| || |||||||
Sbjct: 635 aacaatgctcgtgtgttgatatctgg 660
>gb|CV063418.1|CV063418 BNEL8B1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL8B1 5' similar to putative
dolichyl-di-phosphooligosaccharide- protein, mRNA
sequence
Length = 551
Score = 462 bits (233), Expect = e-128
Identities = 434/501 (86%)
Strand = Plus / Plus
Query: 884 agctggaaacgagcaatttgtggcagagataagcaaatgggttttccatgagaggggaca 943
||||||||| || ||||||||| |||||| |||||||||||| |||||||||||||| ||
Sbjct: 20 agctggaaatgaacaatttgtgacagagacaagcaaatgggtcttccatgagaggggtca 79
Query: 944 tctaaaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgta 1003
||| ||||| || ||||| ||||| || |||||||||||||| ||||||| |||||||
Sbjct: 80 tctgaaggcagtgaatgtcaggcaccataaggttggggagacagatgaacctagcatgta 139
Query: 1004 ccgcattaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctg 1063
|||||| ||||||||| |||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 140 ccgcatcaatgatgacttggaatactcagttgagatatacgaatggtctggaacaagctg 199
Query: 1064 gaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttct 1123
|||||| |||||||| |||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 200 gaagccatatgttgccgatgatgttcagattcagtttttcatgatgagcccttacgttct 259
Query: 1124 gaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgt 1183
||||| |||||| || ||||| | | | | |||||| || ||||||||||||| |||||
Sbjct: 260 gaaaaatatgtcaaccgacaaaactgctctatattcagcatccttcaaagttccggatgt 319
Query: 1184 ttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtcttt 1243
|||||||||||||||||||||||||||||||||||| || ||||| ||||| | ||| |
Sbjct: 320 ttatggagttttccagttcaaagttgagtaccaaaggcttggatacactggcgtctctct 379
Query: 1244 tacaaagcagattccagtacgtccttacagacataatgagtatgagagattcataacatc 1303
| |||||||||||||||| || || ||||| ||| | ||||||||||| |||||||| ||
Sbjct: 380 tgcaaagcagattccagtgcggccatacaggcatgacgagtatgagaggttcataacttc 439
Query: 1304 agcgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattctcgtt 1363
||||| |||||||| | |||||||||||||||||||| || |||||| ||||||| |
Sbjct: 440 agcgtttccatactatgctgcctcattttcaacaatgggagccttcttcatattctcagt 499
Query: 1364 tgtgtacctgtaccacaaata 1384
|| ||||||||| ||||||||
Sbjct: 500 tgcgtacctgtatcacaaata 520
>gb|CB875665.1|CB875665 HX08P22w HX Hordeum vulgare subsp. vulgare cDNA clone HX08P22
3-PRIME, mRNA sequence
Length = 679
Score = 440 bits (222), Expect = e-122
Identities = 414/478 (86%)
Strand = Plus / Minus
Query: 907 cagagataagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggc 966
|||||| |||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 677 cagagacaagcaaatgggtcttccatgagaggggtcatctgaaggcagtgaatgtcaggc 618
Query: 967 atcacaaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaat 1026
| || |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||
Sbjct: 617 accataaggttggggagacagatgaacctagcatgtaccgcatcaatgatgacttggaat 558
Query: 1027 actctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatg 1086
|||| |||||||| || |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 557 actcagttgagatatacgaatggtctggaacaagctggaagccatatgttgccgatgatg 498
Query: 1087 tgcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaaca 1146
| ||| |||| ||||||||||||||||||||||||||||||| |||||| || ||||| |
Sbjct: 497 ttcagattcagtttttcatgatgagcccttacgttctgaaaaatatgtcaaccgacaaaa 438
Query: 1147 agggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaag 1206
| | | |||||| || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 ctgctctatattcagcatccttcaaagttccggatgtttatggagttttccagttcaaag 378
Query: 1207 ttgagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtc 1266
||||||||||||| || ||||| ||||| | ||| || |||||||||||||||| || |
Sbjct: 377 ttgagtaccaaaggcttggatacactggcgtctctcttgcaaagcagattccagtgcggc 318
Query: 1267 cttacagacataatgagtatgagagattcataacatcagcgtacccatactacaccgcct 1326
| ||||| ||| | ||||||||||| |||||||| ||||||| |||||||| | ||||
Sbjct: 317 catacaggcatgacgagtatgagaggttcataacttcagcgtttccatactatgctgcct 258
Query: 1327 cattttcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
|||||||||||||||| || |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 257 cattttcaacaatgggagccttcttcatattctcagttgcgtacctgtatcacaaata 200
>gb|BU982643.1|BU982643 HA27C18r HA Hordeum vulgare subsp. vulgare cDNA clone HA27C18
5-PRIME, mRNA sequence
Length = 597
Score = 432 bits (218), Expect = e-119
Identities = 467/550 (84%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 48 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 107
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 108 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 167
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 168 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 227
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 228 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 287
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 288 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 347
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 348 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 407
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatc 572
|| |||||| ||| || |||||| |||||||||||||||||||| || ||||| ||
Sbjct: 408 aattatgcctccactgagtctgaaggggatcacaccttgattgctggcgatgatctgatt 467
Query: 573 cattcggatgtgatactagggtctgaaaagattgaggctcctgtattgtttcgaggaatt 632
|| || ||||||||| | ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 468 cagtcagatgtgatattggggtccaaaaagattgaggctcctgtattgtttcgagggatt 527
Query: 633 ggacacatggctaatccatcaaacagtttggttctgaaggttctatcagcctctccatca 692
||||| ||| |||||||| ||||| |||||| ||||||||||||| ||||| || ||
Sbjct: 528 ggacatgcggccaatccatccaacagcttggttttgaaggttctatctgcctcgccgtcg 587
Query: 693 gcatattcag 702
|| |||||||
Sbjct: 588 gcgtattcag 597
>gb|BF261152.2|BF261152 HVSMEf0023O08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023O08f, mRNA sequence
Length = 726
Score = 430 bits (217), Expect = e-119
Identities = 481/569 (84%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 122 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 181
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| || ||| | ||||| || ||||||||||| |||||
Sbjct: 182 gccttcttcggctcgctccaggcccgtgggctagatctggagttccgcctcgcggacgac 241
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 242 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 301
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 302 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 361
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 362 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 421
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 422 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 481
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatc 572
|| |||||| ||| || |||||| |||||||||||||||||||| || ||||| ||
Sbjct: 482 aattatgcctccactgagtctgaaggggatcacaccttgattgctggcgatgatctgatt 541
Query: 573 cattcggatgtgatactagggtctgaaaagattgaggctcctgtattgtttcgaggaatt 632
|| || ||||||||| | ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 542 cagtcagatgtgatattggggtccaaaaagattgaggctcctgtattgtttcgagggatt 601
Query: 633 ggacacatggctaatccatcaaacagtttggttctgaaggttctatcagcctctccatca 692
||||| ||| |||||||| ||||| |||||| ||||||||||||| ||||| || ||
Sbjct: 602 ggacatgcggccaatccatccaacagcttggttttgaaggttctatctgcctcgccgtcg 661
Query: 693 gcatattcagctaatccaaagactaagtt 721
|| |||||||| || ||| |||||||||
Sbjct: 662 gcgtattcagcaaacccagggactaagtt 690
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 52 cgtcctcctcctcctcgccgccgc 75
>gb|AL507857.1|AL507857 AL507857 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A21V 5',
mRNA sequence
Length = 612
Score = 426 bits (215), Expect = e-117
Identities = 500/594 (84%), Gaps = 1/594 (0%)
Strand = Plus / Plus
Query: 255 ttccgcctcgctgacgatcccaagctctcgctccaccgctacggccagtacctctacgac 314
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8 ttccgcctcgcggacgaccccaagctctcgctccaccgctacggtcagtacctctacgac 67
Query: 315 ggcctcgtgctcttcgccccctccacaccacgttttggtggatcagtggaccagaacgca 374
|||||||| ||||||||||| || || || || ||||| ||||| ||||||||||||||
Sbjct: 68 ggcctcgtcctcttcgccccgtcgaccccgcgctttggcggatcggtggaccagaacgct 127
Query: 375 gtcctcgaatttattgatgctgggcatgacatgatcctggcggcagattcctctgcctct 434
|| || || || || ||||||||||| |||||||| ||||| |||||| || || |||
Sbjct: 128 gttctggagttcatcgatgctgggcacgacatgattctggcagcagatcattcggcttct 187
Query: 435 gatctcattcgtggcattgcaacagagtgtggggttgattttgatgaggatccagaggca 494
||||| || || ||||| ||||| |||||||||||||||||||||||||| || || ||
Sbjct: 188 gatctgatccgcggcatcgcaaccgagtgtggggttgattttgatgaggacccggaagcg 247
Query: 495 atggttattgaccatatgaactatgccgtcacagatgttgaaggtgatcacaccttgatt 554
|||||||||||||| || || |||||| ||| || |||||| |||||||||||||||
Sbjct: 248 atggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgatt 307
Query: 555 gctggtgacgatcttatccattcggatgtgatactagggtctgaaaagattgaggctcct 614
||||| || ||||| || || || ||||||||| | ||||| |||||||||||||||||
Sbjct: 308 gctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcct 367
Query: 615 gtattgtttcgaggaattggacacatggctaatccatcaaacagtttggttctgaaggtt 674
|||||||||||||| |||||||| ||| |||||||| ||||| |||||| ||||||||
Sbjct: 368 gtattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggtt 427
Query: 675 ctatcagcctctccatcagcatattcagctaatccaaagactaagttagcgtctcctcca 734
||||| ||||| || || || |||||||| || ||| ||||||||| || || ||||
Sbjct: 428 ctatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttcca 487
Query: 735 tcgctcactgggtcagctatatcattggtttc-ggttatgcaggcaagaaataatgctcg 793
|| ||||| ||||| || |||||| ||||||| ||||||||||| | || ||||||||
Sbjct: 488 tctctcacagggtcggccatatcactggtttcttgttatgcaggctangaacaatgctcg 547
Query: 794 ggtgctgttatctggatcactcgatctgtttagcaaccggttcctgaagtctgg 847
||| || ||||||||||||| ||| ||||||||||| ||||||| ||||||||
Sbjct: 548 tgtgttgatatctggatcactggatttgtttagcaacaggttcctcaagtctgg 601
>gb|BJ459673.1|BJ459673 BJ459673 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak37n09 3', mRNA sequence
Length = 613
Score = 420 bits (212), Expect = e-116
Identities = 408/472 (86%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 914 aagcaaatgggttttccatgagaggggacatc-taaaggctgttaatgttaggcatcaca 972
|||||||||||| |||||||||||||| |||| | ||||| || ||||| ||||| || |
Sbjct: 602 aagcaaatgggtcttccatgagaggggtcatcctgaaggcagtgaatgtcaggcaccata 543
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||| |
Sbjct: 542 aggttggggagacagatgaacctagcatgtaccgcatcaatgatgacttggaatactcag 483
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 482 ttgagatatacgaatggtctggaacaagctggaagccatatgttgccgatgatgttcaga 423
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtt 1152
|||| ||||||||||||||||||||||||||||||| |||||| || ||||| | | |
Sbjct: 422 ttcagtttttcatgatgagcccttacgttctgaaaaatatgtcaaccgacaaaactgctc 363
Query: 1153 tgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgagt 1212
| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 362 tatattcagcatccttcaaagttccggatgtttatggagttttccagttcaaagttgagt 303
Query: 1213 accaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtccttaca 1272
||||||| || ||||| ||||| | ||| || |||||||||||||||| || || ||||
Sbjct: 302 accaaaggcttggatacactggcgtctctcttgcaaagcagattccagtgcggccataca 243
Query: 1273 gacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctcatttt 1332
| ||| | ||||||||||| |||||||| ||||||| |||||||| | ||||||||||
Sbjct: 242 ggcatgacgagtatgagaggttcataacttcagcgtttccatactatgctgcctcatttt 183
Query: 1333 caacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
|||||||||| || |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 182 caacaatgggagccttcttcatattctcagttgcgtacctgtatcacaaata 131
>gb|BG343577.2|BG343577 HVSMEg0006H01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H01f, mRNA sequence
Length = 985
Score = 410 bits (207), Expect = e-113
Identities = 514/615 (83%), Gaps = 2/615 (0%)
Strand = Plus / Plus
Query: 246 gatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctacggccagtac 305
||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 2 gatctggagttccgcctcgcggacgaccccaagctctcgctccaccgctacggtcagtac 61
Query: 306 ctctacgacggcctcgtgctcttcgccccctccacaccacgttttggtggatcagtggac 365
||||||||||||||||| ||||||||||| || || || || ||||| ||||| ||||||
Sbjct: 62 ctctacgacggcctcgtcctcttcgccccgtcgaccccgcgctttggcggatcggtggac 121
Query: 366 cagaacgcagtcctcgaatttattgatgctgggcatgacatgatcctggcggcagattcc 425
|||||||| || || || || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 122 cagaacgctgttctggagttcatcgatgctgggcacgacatgattctggcagcagatcat 181
Query: 426 tctgcctctgatctcattcgtggcattgcaacagagtgtggggttgattttgatgaggat 485
|| || |||||||| || || ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 182 tcggcttctgatctgatccgcggcatcgcaaccgagtgtggggttgattttgatgaggac 241
Query: 486 ccagaggcaatggttattgaccatatgaactatgccgtcacagatgttgaaggtgatcac 545
|| || || |||||||||||||| || || |||||| ||| || |||||| ||||||
Sbjct: 242 ccggaagcgatggttattgaccacattaattatgcctccactgagtctgaaggggatcac 301
Query: 546 accttgattgctggtgacgatcttatccattcggatgtgatactagggtctgaaaagatt 605
|||||||||||||| || ||||| || || || ||||||||| | ||||| ||||||||
Sbjct: 302 accttgattgctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagatt 361
Query: 606 gaggctcctgtattgtttcgaggaattggacacatggctaatccatcaaacagtttggtt 665
||||||||||||||||||||||| |||||||| ||| |||||||| ||||| ||||||
Sbjct: 362 gaggctcctgtattgtttcgagggattggacatgcggccaatccatccaacagcttggtt 421
Query: 666 ctgaaggttctatcagcctctccatcagcatattcagctaatccaaagactaagttagcg 725
||||||||||||| ||||| || || || |||||||| || ||| ||||||||| ||
Sbjct: 422 ttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggca 481
Query: 726 tctcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaagaaat 785
|| |||||| ||||| ||||| || |||||| ||||||| |||||||| || || ||
Sbjct: 482 tccgttccatctctcacagggtcggccatatcactggtttctgttatgcangctaggaac 541
Query: 786 aatgctcgg-gtgctgttatctggatcactcgatctgtttagcaaccggttcctgaagtc 844
| ||||| | ||| || ||||||||||||| ||| ||||||||||| |||||| ||||
Sbjct: 542 antgctcngtgtg-tgatatctggatcactggatttgtttagcaacaggttccntcagtc 600
Query: 845 tggtgttcaaaaggc 859
|||||| || |||||
Sbjct: 601 tggtgtgcagaaggc 615
>gb|AV921789.1|AV921789 AV921789 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12n02 3', mRNA sequence
Length = 616
Score = 406 bits (205), Expect = e-111
Identities = 391/453 (86%)
Strand = Plus / Minus
Query: 932 tgagaggggacatctaaaggctgttaatgttaggcatcacaaggttggggagaccaatga 991
||||||||| ||||| ||||| || ||||| ||||| || |||||||||||||| ||||
Sbjct: 616 tgagaggggtcatctgaaggcagtgaatgtcaggcaccataaggttggggagacagatga 557
Query: 992 accaggcatgtaccgcattaatgatgacctggaatactctgttgagatctatgaatggtc 1051
||| ||||||||||||| ||||||||| |||||||||| |||||||| || ||||||||
Sbjct: 556 acctagcatgtaccgcatcaatgatgacttggaatactcagttgagatatacgaatggtc 497
Query: 1052 cggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatgag 1111
||||||||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||
Sbjct: 496 tggaacaagctggaagccatatgttgccgatgatgttcagattcagtttttcatgatgag 437
Query: 1112 cccttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaa 1171
||||||||||||||||| |||||| || ||||| | | | | |||||| || |||||||
Sbjct: 436 cccttacgttctgaaaaatatgtcaaccgacaaaactgctctatattcagcatccttcaa 377
Query: 1172 agttccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatac 1231
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 376 agttccggatgtttatggagttttccagttcaaagttgagtaccaaaggcttggatacac 317
Query: 1232 tggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgagag 1291
||| | ||| || |||||||||||||||| || || ||||| ||| | |||||||||||
Sbjct: 316 tggcgtctctcttgcaaagcagattccagtgcggccatacaggcatgacgagtatgagag 257
Query: 1292 attcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttctt 1351
|||||||| ||||||| |||||||| | |||||||||||||||||||| || |||||
Sbjct: 256 gttcataacttcagcgtttccatactatgctgcctcattttcaacaatgggagccttctt 197
Query: 1352 cgtattctcgtttgtgtacctgtaccacaaata 1384
| ||||||| ||| ||||||||| ||||||||
Sbjct: 196 catattctcagttgcgtacctgtatcacaaata 164
>gb|CA021101.1|CA021101 HZ39B21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B21
5-PRIME, mRNA sequence
Length = 582
Score = 400 bits (202), Expect = e-110
Identities = 388/450 (86%)
Strand = Plus / Plus
Query: 935 gaggggacatctaaaggctgttaatgttaggcatcacaaggttggggagaccaatgaacc 994
|||||| ||||| ||||| || ||||| ||||| || |||||||||||||| |||||||
Sbjct: 11 gaggggtcatctgaaggcagtgaatgtcaggcaccataaggttggggagacagatgaacc 70
Query: 995 aggcatgtaccgcattaatgatgacctggaatactctgttgagatctatgaatggtccgg 1054
||||||||||||| ||||||||| |||||||||| |||||||| || |||||||| ||
Sbjct: 71 tagcatgtaccgcatcaatgatgacttggaatactcagttgagatatacgaatggtctgg 130
Query: 1055 aacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagccc 1114
||||||||||||||| |||||||| |||||||| ||| |||| |||||||||||||||||
Sbjct: 131 aacaagctggaagccatatgttgccgatgatgttcagattcagtttttcatgatgagccc 190
Query: 1115 ttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagt 1174
|||||||||||||| |||||| || ||||| | | | | |||||| || ||||||||||
Sbjct: 191 ttacgttctgaaaaatatgtcaaccgacaaaactgctctatattcagcatccttcaaagt 250
Query: 1175 tccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactgg 1234
||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 251 tccggatgtttatggagttttccagttcaaagttgagtaccaaaggcttggatacactgg 310
Query: 1235 tctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagatt 1294
| ||| || |||||||||||||||| || || ||||| ||| | ||||||||||| ||
Sbjct: 311 cgtctctcttgcaaagcagattccagtgcggccatacaggcatgacgagtatgagaggtt 370
Query: 1295 cataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgt 1354
|||||| ||||||| |||||||| | |||||||||||||||||||| || |||||| |
Sbjct: 371 cataacttcagcgtttccatactatgctgcctcattttcaacaatgggagccttcttcat 430
Query: 1355 attctcgtttgtgtacctgtaccacaaata 1384
|||||| ||| ||||||||| ||||||||
Sbjct: 431 attctcagttgcgtacctgtatcacaaata 460
>gb|AV912123.1|AV912123 AV912123 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak2n06 3', mRNA sequence
Length = 603
Score = 391 bits (197), Expect = e-107
Identities = 377/437 (86%)
Strand = Plus / Minus
Query: 948 aaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgc 1007
||||| || ||||| ||||| || |||||||||||||| ||||||| |||||||||||
Sbjct: 602 aaggcagtgaatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgc 543
Query: 1008 attaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaag 1067
|| ||||||||| |||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 542 atcaatgatgacttggaatactcagttgagatatacgaatggtctggaacaagctggaag 483
Query: 1068 ccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaa 1127
|| |||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 482 ccatatgttgccgatgatgttcagattcagtttttcatgatgagcccttacgttctgaaa 423
Query: 1128 actatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgtttat 1187
| |||||| || ||||| | | | | |||||| || ||||||||||||| |||||||||
Sbjct: 422 aatatgtcaaccgacaaaactgctctatattcagcatccttcaaagttccggatgtttat 363
Query: 1188 ggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtcttttaca 1247
|||||||||||||||||||||||||||||||| || ||||| ||||| | ||| || ||
Sbjct: 362 ggagttttccagttcaaagttgagtaccaaaggcttggatacactggcgtctctcttgca 303
Query: 1248 aagcagattccagtacgtccttacagacataatgagtatgagagattcataacatcagcg 1307
|||||||||||||| || || ||||| ||| | ||||||||||| |||||||| ||||||
Sbjct: 302 aagcagattccagtgcggccatacaggcatgacgagtatgagaggttcataacttcagcg 243
Query: 1308 tacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattctcgtttgtg 1367
| |||||||| | |||||||||||||||||||| || |||||| ||||||| ||| |
Sbjct: 242 tttccatactatgctgcctcattttcaacaatgggagccttcttcatattctcagttgcg 183
Query: 1368 tacctgtaccacaaata 1384
|||||||| ||||||||
Sbjct: 182 tacctgtatcacaaata 166
>gb|AV912409.1|AV912409 AV912409 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak3n06 3', mRNA sequence
Length = 620
Score = 391 bits (197), Expect = e-107
Identities = 377/437 (86%)
Strand = Plus / Minus
Query: 948 aaggctgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgc 1007
||||| || ||||| ||||| || |||||||||||||| ||||||| |||||||||||
Sbjct: 620 aaggcagtgaatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgc 561
Query: 1008 attaatgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaag 1067
|| ||||||||| |||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 560 atcaatgatgacttggaatactcagttgagatatacgaatggtctggaacaagctggaag 501
Query: 1068 ccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaa 1127
|| |||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 500 ccatatgttgccgatgatgttcagattcagtttttcatgatgagcccttacgttctgaaa 441
Query: 1128 actatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccagatgtttat 1187
| |||||| || ||||| | | | | |||||| || ||||||||||||| |||||||||
Sbjct: 440 aatatgtcaaccgacaaaactgctctatattcagcatccttcaaagttccggatgtttat 381
Query: 1188 ggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtcttttaca 1247
|||||||||||||||||||||||||||||||| || ||||| ||||| | ||| || ||
Sbjct: 380 ggagttttccagttcaaagttgagtaccaaaggcttggatacactggcgtctctcttgca 321
Query: 1248 aagcagattccagtacgtccttacagacataatgagtatgagagattcataacatcagcg 1307
|||||||||||||| || || ||||| ||| | ||||||||||| |||||||| ||||||
Sbjct: 320 aagcagattccagtgcggccatacaggcatgacgagtatgagaggttcataacttcagcg 261
Query: 1308 tacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattctcgtttgtg 1367
| |||||||| | |||||||||||||||||||| || |||||| ||||||| ||| |
Sbjct: 260 tttccatactatgctgcctcattttcaacaatgggagccttcttcatattctcagttgcg 201
Query: 1368 tacctgtaccacaaata 1384
|||||||| ||||||||
Sbjct: 200 tacctgtatcacaaata 184
>gb|AV918303.1|AV918303 AV918303 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j10 3', mRNA sequence
Length = 619
Score = 389 bits (196), Expect = e-106
Identities = 370/428 (86%)
Strand = Plus / Minus
Query: 957 aatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaatgat 1016
||||| ||||| || |||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct: 612 aatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgcatcaatgat 553
Query: 1017 gacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgtatgtt 1076
||| |||||||||| |||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 552 gacttggaatactcagttgagatatacgaatggtctggaacaagctggaagccatatgtt 493
Query: 1077 gctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcg 1136
|| |||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 492 gccgatgatgttcagattcagtttttcatgatgagcccttacgttctgaaaaatatgtca 433
Query: 1137 actgacaacaagggtttgtattcaacaaccttcaaagttccagatgtttatggagttttc 1196
|| ||||| | | | | |||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 432 accgacaaaactgctctatattcagcatccttcaaagttccggatgtttatggagttttc 373
Query: 1197 cagttcaaagttgagtaccaaagactgggatatactggtctgtcttttacaaagcagatt 1256
||||||||||||||||||||||| || ||||| ||||| | ||| || |||||||||||
Sbjct: 372 cagttcaaagttgagtaccaaaggcttggatacactggcgtctctcttgcaaagcagatt 313
Query: 1257 ccagtacgtccttacagacataatgagtatgagagattcataacatcagcgtacccatac 1316
||||| || || ||||| ||| | ||||||||||| |||||||| ||||||| ||||||
Sbjct: 312 ccagtgcggccatacaggcatgacgagtatgagaggttcataacttcagcgtttccatac 253
Query: 1317 tacaccgcctcattttcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtac 1376
|| | |||||||||||||||||||| || |||||| ||||||| ||| |||||||||
Sbjct: 252 tatgctgcctcattttcaacaatgggagccttcttcatattctcagttgcgtacctgtat 193
Query: 1377 cacaaata 1384
||||||||
Sbjct: 192 cacaaata 185
>gb|AV919781.1|AV919781 AV919781 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7j11 3', mRNA sequence
Length = 619
Score = 389 bits (196), Expect = e-106
Identities = 370/428 (86%)
Strand = Plus / Minus
Query: 957 aatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaatgat 1016
||||| ||||| || |||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct: 611 aatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgcatcaatgat 552
Query: 1017 gacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgtatgtt 1076
||| |||||||||| |||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 551 gacttggaatactcagttgagatatacgaatggtctggaacaagctggaagccatatgtt 492
Query: 1077 gctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcg 1136
|| |||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 491 gccgatgatgttcagattcagtttttcatgatgagcccttacgttctgaaaaatatgtca 432
Query: 1137 actgacaacaagggtttgtattcaacaaccttcaaagttccagatgtttatggagttttc 1196
|| ||||| | | | | |||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 431 accgacaaaactgctctatattcagcatccttcaaagttccggatgtttatggagttttc 372
Query: 1197 cagttcaaagttgagtaccaaagactgggatatactggtctgtcttttacaaagcagatt 1256
||||||||||||||||||||||| || ||||| ||||| | ||| || |||||||||||
Sbjct: 371 cagttcaaagttgagtaccaaaggcttggatacactggcgtctctcttgcaaagcagatt 312
Query: 1257 ccagtacgtccttacagacataatgagtatgagagattcataacatcagcgtacccatac 1316
||||| || || ||||| ||| | ||||||||||| |||||||| ||||||| ||||||
Sbjct: 311 ccagtgcggccatacaggcatgacgagtatgagaggttcataacttcagcgtttccatac 252
Query: 1317 tacaccgcctcattttcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtac 1376
|| | |||||||||||||||||||| || |||||| ||||||| ||| |||||||||
Sbjct: 251 tatgctgcctcattttcaacaatgggagccttcttcatattctcagttgcgtacctgtat 192
Query: 1377 cacaaata 1384
||||||||
Sbjct: 191 cacaaata 184
>gb|CV058984.1|CV058984 BNEL43b2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL43b2 5' similar to putative
dolichyl-di-phosphooligosaccharide- protein, mRNA
sequence
Length = 600
Score = 387 bits (195), Expect = e-106
Identities = 480/575 (83%)
Strand = Plus / Plus
Query: 432 tctgatctcattcgtggcattgcaacagagtgtggggttgattttgatgaggatccagag 491
|||||||| || || ||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 26 tctgatctgatccgcggcatcgcaaccgagtgtggggttgattttgatgaggacccggaa 85
Query: 492 gcaatggttattgaccatatgaactatgccgtcacagatgttgaaggtgatcacaccttg 551
|| |||||||||||||| || || |||||| ||| || |||||| ||||||||||||
Sbjct: 86 gcgatggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttg 145
Query: 552 attgctggtgacgatcttatccattcggatgtgatactagggtctgaaaagattgaggct 611
|||||||| || ||||| || || || ||||||||| | ||||| ||||||||||||||
Sbjct: 146 attgctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggct 205
Query: 612 cctgtattgtttcgaggaattggacacatggctaatccatcaaacagtttggttctgaag 671
||||||||||||||||| |||||||| ||| |||||||| ||||| |||||| |||||
Sbjct: 206 cctgtattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaag 265
Query: 672 gttctatcagcctctccatcagcatattcagctaatccaaagactaagttagcgtctcct 731
|||||||| ||||| || || || |||||||| || || ||||||||| || || |
Sbjct: 266 gttctatctgcctcgccgtcggcgtattcagcaaacccggggactaagttggcatccgtt 325
Query: 732 ccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaagaaataatgct 791
||||| ||||| ||||| || |||||| ||||||| ||||||||||| || || ||||||
Sbjct: 326 ccatctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgct 385
Query: 792 cgggtgctgttatctggatcactcgatctgtttagcaaccggttcctgaagtctggtgtt 851
|| ||| || ||||||||||||| ||| ||||||||||| ||||||| |||||||||||
Sbjct: 386 cgtgtgttgatatctggatcactggatttgtttagcaacaggttcctcaagtctggtgtg 445
Query: 852 caaaaggctgatagcaaaacaagatatgagagagctggaaacgagcaatttgtggcagag 911
|| ||||| | ||||||| || |||| | ||||||||| || ||||||||| |||||
Sbjct: 446 cagaaggcaggcagcaaaatgagccatgacaaagctggaaatgaacaatttgtgacagag 505
Query: 912 ataagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcac 971
| |||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 506 acaagcaaatgggtcttccatgagaggggtcatctgaaggcagtgaatgtcaggcaccat 565
Query: 972 aaggttggggagaccaatgaaccaggcatgtaccg 1006
|||||||||||||| ||||||| ||||||||||
Sbjct: 566 aaggttggggagacagatgaacctagcatgtaccg 600
>gb|AV910025.1|AV910025 AV910025 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak2n06 5', mRNA sequence
Length = 607
Score = 383 bits (193), Expect = e-104
Identities = 358/413 (86%)
Strand = Plus / Plus
Query: 972 aaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactct 1031
|||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct: 7 aaggttggggagacagatgaacctagcatgtaccgcatcaatgatgacttggaatactca 66
Query: 1032 gttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcag 1091
|||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 67 gttgagatatacgaatggtctggaacaagctggaagccatatgttgccgatgatgttcag 126
Query: 1092 cttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggt 1151
|||| ||||||||||||||||||||||||||||||| |||||| || ||||| | | |
Sbjct: 127 attcagtttttcatgatgagcccttacgttctgaaaaatatgtcaaccgacaaaactgct 186
Query: 1152 ttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgag 1211
| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 187 ctatattcagcatccttcaaagttccggatgtttatggagttttccagttcaaagttgag 246
Query: 1212 taccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtccttac 1271
|||||||| || ||||| ||||| | ||| || |||||||||||||||| || || |||
Sbjct: 247 taccaaaggcttggatacactggcgtctctcttgcaaagcagattccagtgcggccatac 306
Query: 1272 agacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctcattt 1331
|| ||| | ||||||||||| |||||||| ||||||| |||||||| | |||||||||
Sbjct: 307 aggcatgacgagtatgagaggttcataacttcagcgtttccatactatgctgcctcattt 366
Query: 1332 tcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
||||||||||| || |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 367 tcaacaatgggagccttcttcatattctcagttgcgtacctgtatcacaaata 419
>gb|BU984047.1|BU984047 HA31N09r HA Hordeum vulgare subsp. vulgare cDNA clone HA31N09
5-PRIME, mRNA sequence
Length = 593
Score = 383 bits (193), Expect = e-104
Identities = 358/413 (86%)
Strand = Plus / Plus
Query: 972 aaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactct 1031
|||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct: 14 aaggttggggagacagatgaacctagcatgtaccgcatcaatgatgacttggaatactca 73
Query: 1032 gttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcag 1091
|||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 74 gttgagatatacgaatggtctggaacaagctggaagccatatgttgccgatgatgttcag 133
Query: 1092 cttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggt 1151
|||| ||||||||||||||||||||||||||||||| |||||| || ||||| | | |
Sbjct: 134 attcagtttttcatgatgagcccttacgttctgaaaaatatgtcaaccgacaaaactgct 193
Query: 1152 ttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgag 1211
| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 194 ctatattcagcatccttcaaagttccggatgtttatggagttttccagttcaaagttgag 253
Query: 1212 taccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtccttac 1271
|||||||| || ||||| ||||| | ||| || |||||||||||||||| || || |||
Sbjct: 254 taccaaaggcttggatacactggcgtctctcttgcaaagcagattccagtgcggccatac 313
Query: 1272 agacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctcattt 1331
|| ||| | ||||||||||| |||||||| ||||||| |||||||| | |||||||||
Sbjct: 314 aggcatgacgagtatgagaggttcataacttcagcgtttccatactatgctgcctcattt 373
Query: 1332 tcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
||||||||||| || |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 374 tcaacaatgggagccttcttcatattctcagttgcgtacctgtatcacaaata 426
>gb|AV917048.1|AV917048 AV917048 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j10 5', mRNA sequence
Length = 515
Score = 373 bits (188), Expect = e-101
Identities = 427/507 (84%)
Strand = Plus / Plus
Query: 533 tgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtgatactagg 592
|||||| ||| |||||||||||||||| || ||||| || || || ||||||||| | ||
Sbjct: 9 tgaaggggatnacaccttgattgctggcgatgatctgattcagtcagatgtgatattggg 68
Query: 593 gtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccatc 652
||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 69 gtccaaaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccatc 128
Query: 653 aaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaa 712
||||| |||||| ||||||||||||| ||||| || || || |||||||| || |||
Sbjct: 129 caacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagg 188
Query: 713 gactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggttat 772
||||||||| || || |||||| ||||| ||||| || |||||| ||||||| |||||
Sbjct: 189 gactaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgttat 248
Query: 773 gcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccg 832
|||||| || || |||||||| ||| || ||||||||||||| ||| ||||||||||| |
Sbjct: 249 gcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaacag 308
Query: 833 gttcctgaagtctggtgttcaaaaggctgatagcaaaacaagatatgagagagctggaaa 892
|||||| ||||||||||| || ||||| | ||||||| || |||| | |||||||||
Sbjct: 309 gttcctcaagtctggtgtgcagaaggcaggcagcaaaatgagccatgacaaagctggaaa 368
Query: 893 cgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggc 952
|| ||||||||| |||||| |||||||||||| |||||||||||||| ||||| |||||
Sbjct: 369 tgaacaatttgtgacagagacaagcaaatgggtcttccatgagaggggtcatctgaaggc 428
Query: 953 tgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaa 1012
|| ||||| ||||| || |||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 429 agtgaatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgcatcaa 488
Query: 1013 tgatgacctggaatactctgttgagat 1039
||||||| |||||||||| ||||||||
Sbjct: 489 tgatgacttggaatactcagttgagat 515
>gb|CB858496.1|CB858496 HI07E04w HI Hordeum vulgare subsp. vulgare cDNA clone HI07E04
3-PRIME, mRNA sequence
Length = 601
Score = 371 bits (187), Expect = e-101
Identities = 352/407 (86%)
Strand = Plus / Minus
Query: 978 ggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctgttgag 1037
|||||||| ||||||| ||||||||||||| ||||||||| |||||||||| ||||||
Sbjct: 601 ggggagacagatgaacctagcatgtaccgcatcaatgatgacttggaatactcagttgag 542
Query: 1038 atctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaa 1097
|| || |||||||| ||||||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 541 atatacgaatggtctggaacaagctggaagccatatgttgccgatgatgttcagattcag 482
Query: 1098 tttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgtat 1157
||||||||||||||||||||||||||||||| |||||| || ||||| | | | | |||
Sbjct: 481 tttttcatgatgagcccttacgttctgaaaaatatgtcaaccgacaaaactgctctatat 422
Query: 1158 tcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaa 1217
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcagcatccttcaaagttccggatgtttatggagttttccagttcaaagttgagtaccaa 362
Query: 1218 agactgggatatactggtctgtcttttacaaagcagattccagtacgtccttacagacat 1277
|| || ||||| ||||| | ||| || |||||||||||||||| || || ||||| |||
Sbjct: 361 aggcttggatacactggcgtctctcttgcaaagcagattccagtgcggccatacaggcat 302
Query: 1278 aatgagtatgagagattcataacatcagcgtacccatactacaccgcctcattttcaaca 1337
| ||||||||||| |||||||| ||||||| |||||||| | |||||||||||||||
Sbjct: 301 gacgagtatgagaggttcataacttcagcgtttccatactatgctgcctcattttcaaca 242
Query: 1338 atgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
||||| || |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 241 atgggagccttcttcatattctcagttgcgtacctgtatcacaaata 195
>gb|AV914689.1|AV914689 AV914689 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7j11 5', mRNA sequence
Length = 561
Score = 369 bits (186), Expect = e-100
Identities = 420/498 (84%)
Strand = Plus / Plus
Query: 533 tgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtgatactagg 592
|||||| |||||||||||||||||||| || ||||| || || || ||||||||| | ||
Sbjct: 60 tgaaggggatcacaccttgattgctggcgatgatctgattcagtcagatgtgatattggg 119
Query: 593 gtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccatc 652
||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 120 gtccaaaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccatc 179
Query: 653 aaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaa 712
||||| |||||| ||||||||||||| ||||| || || || |||||||| || |||
Sbjct: 180 caacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagg 239
Query: 713 gactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggttat 772
||||||||| || || |||||| ||||| ||||| || |||||| ||||||| |||||
Sbjct: 240 gactaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgttat 299
Query: 773 gcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccg 832
|||||| || || |||||||| ||| || ||||||||||||| ||| ||||||||||| |
Sbjct: 300 gcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaacag 359
Query: 833 gttcctgaagtctggtgttcaaaaggctgatagcaaaacaagatatgagagagctggaaa 892
|||||| ||||||||||| || ||||| | ||||||| || |||| | |||||||||
Sbjct: 360 gttcctcaagtctggtgtgcagaaggcaggcagcaaaatgagccatgacaaagctggaaa 419
Query: 893 cgagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggc 952
|| ||||||||| |||||| |||||||||||| |||||||||||||| ||||| |||||
Sbjct: 420 tgaacaatttgtgacagagacaagcaaatgggtcttccatgagaggggtcatctgaaggc 479
Query: 953 tgttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaa 1012
|| ||||| ||||| || |||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 480 agtgaatgtcaggcaccataaggttggggagacagatgaacctagcatgtaccgcatcaa 539
Query: 1013 tgatgacctggaatactc 1030
||||||| ||||||||||
Sbjct: 540 tgatgacttggaatactc 557
>gb|BI953854.1|BI953854 HVSMEm0015A11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0015A11f, mRNA sequence
Length = 624
Score = 367 bits (185), Expect = e-100
Identities = 410/485 (84%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 130 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 189
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 190 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 249
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 250 cccaagctctcgctccaccgctacggtcagtacctttacgacggcctcgtcctcttcgcc 309
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 310 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 369
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 370 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 429
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 430 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 489
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatc 572
|| |||||| |||| || |||||| |||||||||||||||||||| || ||||| ||
Sbjct: 490 aattatgccttcactgagtctgaaggggatcacaccttgattgctggcgatgatctgatt 549
Query: 573 cattcggatgtgatactagggtctgaaaagattgaggctcctgtattgtttcgaggaatt 632
|| | |||| |||| | ||| | ||||||||||||||||||||||||||| ||| |||
Sbjct: 550 cagtgcgatgggatattgggggccaaaaagattgaggctcctgtattgtttcaagggatt 609
Query: 633 ggaca 637
|||||
Sbjct: 610 ggaca 614
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 60 cgtcctcctcctcctcgccgccgc 83
>gb|AV910248.1|AV910248 AV910248 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak3n06 5', mRNA sequence
Length = 512
Score = 367 bits (185), Expect = e-100
Identities = 365/424 (86%), Gaps = 2/424 (0%)
Strand = Plus / Plus
Query: 963 aggcatcacaaggttggggagacca--atgaaccaggcatgtaccgcattaatgatgacc 1020
||||| || |||||||||||| || ||||||| ||||||||||||| |||||||||
Sbjct: 2 aggcaccataaggttggggagtacaggatgaacctagcatgtaccgcatcaatgatgact 61
Query: 1021 tggaatactctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctg 1080
|||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| |
Sbjct: 62 tggaatactcagttgagatatacgaatggtctggaacaagctggaagccatatgttgccg 121
Query: 1081 atgatgtgcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactg 1140
||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||| || |
Sbjct: 122 atgatgttcagattcagtttttcatgatgagcccttacgttctgaaaaatatgtcaaccg 181
Query: 1141 acaacaagggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagt 1200
|||| | | | | |||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 182 acaaaactgctctatattcagcatccttcaaagttccggatgtttatggagttttccagt 241
Query: 1201 tcaaagttgagtaccaaagactgggatatactggtctgtcttttacaaagcagattccag 1260
||||||||||||||||||| || ||||| ||||| | ||| || |||||||||||||||
Sbjct: 242 tcaaagttgagtaccaaaggcttggatacactggcgtctctcttgcaaagcagattccag 301
Query: 1261 tacgtccttacagacataatgagtatgagagattcataacatcagcgtacccatactaca 1320
| || || ||||| ||| | ||||||||||| |||||||| ||||||| ||||||||
Sbjct: 302 tgcggccatacaggcatgacgagtatgagaggttcataacttcagcgtttccatactatg 361
Query: 1321 ccgcctcattttcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccaca 1380
| |||||||||||||||||||| || |||||| ||||||| ||| ||||||||| ||||
Sbjct: 362 ctgcctcattttcaacaatgggagccttcttcatattctcagttgcgtacctgtatcaca 421
Query: 1381 aata 1384
||||
Sbjct: 422 aata 425
>gb|BQ753662.1|BQ753662 EBan01_SQ004_O05_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_O05 5', mRNA sequence
Length = 610
Score = 367 bits (185), Expect = e-100
Identities = 395/465 (84%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 146 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 205
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 206 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 265
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 266 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 325
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 326 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 385
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 386 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 445
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 446 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 505
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatc 572
|| |||||| ||| || |||||| |||||||||||||||||||| || ||||| ||
Sbjct: 506 aattatgcctccactgagtctgaaggggatcacaccttgattgctggcgatgatctgatt 565
Query: 573 cattcggatgtgatactagggtctgaaaagattgaggctcctgta 617
|| || ||||||||| | ||||| ||||||||||||||||||||
Sbjct: 566 cagtcagatgtgatattggggtccaaaaagattgaggctcctgta 610
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 76 cgtcctcctcctcctcgccgccgc 99
>gb|CB883383.1|CB883383 HQ02B08w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02B08
3-PRIME, mRNA sequence
Length = 634
Score = 365 bits (184), Expect = 3e-099
Identities = 394/464 (84%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 171 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 230
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 231 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 290
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 291 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 350
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 351 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 410
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 411 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 470
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 471 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 530
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatc 572
|| |||||| ||| || |||||| |||||||||||||||||||| || ||||| ||
Sbjct: 531 aattatgcctccactgagtctgaaggggatcacaccttgattgctggcgatgatctgatt 590
Query: 573 cattcggatgtgatactagggtctgaaaagattgaggctcctgt 616
|| || ||||||||| | ||||| |||||||||||||||||||
Sbjct: 591 cagtcagatgtgatattggggtccaaaaagattgaggctcctgt 634
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 101 cgtcctcctcctcctcgccgccgc 124
>gb|BF261168.2|BF261168 HVSMEf0023O24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023O24f, mRNA sequence
Length = 730
Score = 351 bits (177), Expect = 5e-095
Identities = 444/533 (83%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 123 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 182
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
|||||||||||||||||||| || || ||| | |||| || ||||||||||| |||||
Sbjct: 183 gccttcttcggctcgctccacgcccgtgggctaaatctggagttccgcctcgcggacgac 242
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 243 cccaagctctcactccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 302
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| | || || || ||||| ||||| |||||||||||||| | || || || || |||
Sbjct: 303 ccgacgaccccgcgctttggcggatcggtggaccagaacgctgctctggagttcatcgat 362
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 363 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 422
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 423 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 482
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatc 572
|| |||||| ||| || |||||| |||||||||||||| ||||| || ||||| ||
Sbjct: 483 aattatgcctgcactgactctgaaggggatcacaccttgatggctggcgatgatctgatt 542
Query: 573 cattcggatgtgatactagggtctgaaaagattgaggctcctgtattgtttcgaggaatt 632
|| || ||||||||| | ||||| ||||||||||||||||||||| | ||||||| |||
Sbjct: 543 cagtcagatgtgatattggggtccaaaaagattgaggctcctgtatcgattcgagggatt 602
Query: 633 ggacacatggctaatccatcaaacagtttggttctgaaggttctatcagcctc 685
||||| ||| ||| |||| ||||| |||||| ||||||||||||| |||||
Sbjct: 603 ggacatgcggccaattcatccaacaggttggttttgaaggttctatctgcctc 655
>gb|BG368159.1|BG368159 HVSMEi0016A16f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0016A16f, mRNA sequence
Length = 563
Score = 327 bits (165), Expect = 7e-088
Identities = 353/416 (84%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || | ||||||
Sbjct: 147 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctccttccactcg 206
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 207 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 266
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 267 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 326
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 327 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 386
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 387 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 446
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 447 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 506
Query: 513 aactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatct 568
|| |||||| ||| || |||||| |||||||||||||||||||| || |||||
Sbjct: 507 aattatgcctncactgagtctgaaggggatcacaccttgattgctggcgatgatct 562
>gb|AL509103.1|AL509103 AL509103 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10L12V 5',
mRNA sequence
Length = 700
Score = 321 bits (162), Expect = 4e-086
Identities = 355/418 (84%), Gaps = 1/418 (0%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 206 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 265
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 266 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 325
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 326 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 385
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 386 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 445
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 446 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 505
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatg 512
||||| |||||||||||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 506 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatggttattgaccacatt 565
Query: 513 aactatgccgtcacagatgttgaa-ggtgatcacaccttgattgctggtgacgatctt 569
|| |||||| ||| || |||| || |||||||||||||||||||| || ||||||
Sbjct: 566 aattatgcctccactgagtctgaagggggatcacaccttgattgctggcgatgatctt 623
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 136 cgtcctcctcctcctcgccgccgc 159
>gb|AL505998.1|AL505998 AL505998 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F14T 5',
mRNA sequence
Length = 663
Score = 297 bits (150), Expect = 6e-079
Identities = 316/370 (85%), Gaps = 1/370 (0%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 259 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 318
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 319 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 378
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 379 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 438
Query: 333 ccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgat 392
|| || || || || ||||| ||||| |||||||||||||| || || || || || |||
Sbjct: 439 ccgtcgaccccgcgctttggcggatcggtggaccagaacgctgttctggagttcatcgat 498
Query: 393 gctgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcatt 452
|||||||| |||||||| ||||| |||||| || || |||||||| || || |||||
Sbjct: 499 gctgggcacgacatgattctggcagcagatcattcggcttctgatctgatccgcggcatc 558
Query: 453 gcaacagagtgtggggttgattttgatgaggatccagaggcaat-ggttattgaccatat 511
||||| |||||||||||||||||||||||||| || || || || |||||||||||| ||
Sbjct: 559 gcaaccgagtgtggggttgattttgatgaggacccggaagcgatgggttattgaccacat 618
Query: 512 gaactatgcc 521
|| ||||||
Sbjct: 619 taattatgcc 628
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 189 cgtcctcctcctcctcgccgccgc 212
>gb|BI950887.1|BI950887 HVSMEl0023I15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023I15f, mRNA sequence
Length = 999
Score = 293 bits (148), Expect = 1e-077
Identities = 419/509 (82%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 348 tttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctgggcatgacatg 407
||||| ||||| |||||||||||||| || || || || || ||||||||||| ||||||
Sbjct: 9 tttggcggatcggtggaccagaacgctgttctggagttcatcgatgctgggcacgacatg 68
Query: 408 atcctggcggcagattcctctgcctctgatctcattcgtggcattgcaacagagtgtggg 467
|| ||||| |||||| || || |||||||| || || ||||| ||||| |||||||||
Sbjct: 69 attctggcagcagatcattcggcttctgatctgatccgcggcatcgcaaccgagtgtggg 128
Query: 468 gttgattttgatgaggatccagaggcaatggttattgaccatatgaactatgccgtcaca 527
||||||||||||||||| || || || |||||||||||||| || || |||||| |||
Sbjct: 129 gttgattttgatgaggacccggaagcgatggttattgaccacattaattatgcctccact 188
Query: 528 gatgttgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtgata 587
|| |||||| |||||||||||||||||||| || ||||| || || || |||||||||
Sbjct: 189 gagtctgaaggggatcacaccttgattgctggcgatgatctgattcantcagatgtgata 248
Query: 588 ctagggtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaat 647
| ||||| ||||||||||||||||||||||||||| ||| |||||||| ||| |||
Sbjct: 249 ttggggtccaaaaagattgaggctcctgtattgtttcnagggattggacatgcggccaat 308
Query: 648 ccatcaaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaat 707
||||| ||||| |||||| ||||||||||||| ||||| || || || |||||||| |
Sbjct: 309 ccatccaacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcanac 368
Query: 708 ccaaagactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcg 767
||| ||||||||| || || |||||| ||||| ||||| | |||||| ||| |||
Sbjct: 369 ccagggactaagttggcatccgttccatctctcacagggtcggacatatcactgggttct 428
Query: 768 gttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagc 827
||||||||||| | || |||||||| ||| || ||||||||||||| ||| || |||||
Sbjct: 429 gttatgcaggctaagaacaatgctcgtgtgttgatatctggatcactggatttg-ttagc 487
Query: 828 aaccggttcctgaagtctggtgttcaaaa 856
||| ||||||| ||||||||||| |||||
Sbjct: 488 aacaggttcctcaagtctggtgtgcaaaa 516
>gb|AV919937.1|AV919937 AV919937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8h20 3', mRNA sequence
Length = 527
Score = 291 bits (147), Expect = 4e-077
Identities = 296/347 (85%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 997 gcatgtaccgcattaatgatgacctggaatactctgttgagatctatgaa-tggtccgga 1055
||||||||||||| ||||||||| |||||||||| |||||||| || ||| ||||| |||
Sbjct: 527 gcatgtaccgcatcaatgatgacttggaatactcagttgagatatacgaaatggtctgga 468
Query: 1056 acaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagccct 1115
|||||||||||||| |||||| | |||||||| ||| |||| ||||||||||||||||||
Sbjct: 467 acaagctggaagccatatgttncngatgatgttcagattcagtttttcatgatgagccct 408
Query: 1116 tacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagtt 1175
|||||||| | || |||||| || ||||| | | | | |||| | || |||||||||||
Sbjct: 407 tacgttcttanaaatatgtcaaccgacaaaactgctntatattnagcatccttcaaagtt 348
Query: 1176 ccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggt 1235
|| |||||||||| |||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct: 347 ccggatgtttatgnagttttncagttcaaagttgagtaccaaaggcttggatacnctggc 288
Query: 1236 ctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattc 1295
| ||| || ||||||||||||||||||| || ||||| ||| | ||||||||||| |||
Sbjct: 287 gtctctcttgcaaagcagattccagtacggccatacaggcatgacgagtatgagaggttc 228
Query: 1296 ataacatcagcgtacccatactacaccgcctcattttcaacaatggg 1342
||||| ||||||| |||||||| | ||||||||||||||||||||
Sbjct: 227 ataacttcagcgtttccatactatgctgcctcattttcaacaatggg 181
>gb|BG415601.1|BG415601 HVSMEk0007C11f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0007C11f, mRNA sequence
Length = 625
Score = 260 bits (131), Expect = 1e-067
Identities = 359/434 (82%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 654 aacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaag 713
||||| |||||| ||||||||||||| ||||| || || || |||||||| || ||| |
Sbjct: 1 aacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccaggg 60
Query: 714 actaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggttatg 773
|||||||| || || |||||| ||||| ||||| || |||||| ||||||| ||||||
Sbjct: 61 actaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgttatg 120
Query: 774 caggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccgg 833
||||| || || |||||||| ||| || ||||||||||||| ||| ||||||||||| ||
Sbjct: 121 caggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaacagg 180
Query: 834 ttcctgaagtctggtgttcaaaaggctgatagcaaaacaagatatgagagagctggaaac 893
||||| ||||||||||| || ||||| | ||||||| || |||| | |||||||||
Sbjct: 181 ttcctcaagtctggtgtgcagaaggcaggcagcaaaatgagccatgacaaagctggaaat 240
Query: 894 gagcaatttgtggcagagataagcaaatgggttttccatgagaggggacatctaaaggct 953
|| ||||||||| |||||| |||||||||||| |||||||||| ||| ||||| || ||
Sbjct: 241 gaacaatttgtgacagagacaagcaaatgggtcttccatgagaagggtcatctgaaagca 300
Query: 954 gttaatgttaggcatcacaaggttggggagaccaatgaaccaggcatgtaccgcattaat 1013
|| ||||| |||| || |||||||||||||| |||||||| ||||||||||||| |||
Sbjct: 301 gtgaatgtcaggccccataaggttggggagacaaatgaacctagcatgtaccgcatcaat 360
Query: 1014 gatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgtat 1073
|||||| ||||||||| | ||||| || ||||||| ||||||| |||| |||| |||
Sbjct: 361 gatgactnggaatactcaggtgagaaataccaatggtctggaacaaactgg-agccatat 419
Query: 1074 gttgctgatgatgt 1087
||||| ||||||||
Sbjct: 420 gttgccgatgatgt 433
Score = 40.1 bits (20), Expect = 0.25
Identities = 34/36 (94%), Gaps = 2/36 (5%)
Strand = Plus / Plus
Query: 1184 ttatggagttttccagttcaaagttgagtaccaaag 1219
||||||||||||||| ||||||| ||||||||||||
Sbjct: 520 ttatggagttttcca-ttcaaag-tgagtaccaaag 553
>gb|BG418692.2|BG418692 HVSMEk0024A01f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024A01f, mRNA sequence
Length = 822
Score = 248 bits (125), Expect = 5e-064
Identities = 417/513 (81%), Gaps = 1/513 (0%)
Strand = Plus / Plus
Query: 348 tttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctgggcatgacatg 407
||||| ||||| |||||||||||||| || || || || || ||||||||||| ||||||
Sbjct: 5 tttggcggatcggtggaccagaacgctgttctggagttcatcgatgctgggcacgacatg 64
Query: 408 atcctggcggcagattcctctgcctctgatctcattcgtggcattgcaacagagtgtggg 467
|| ||||| |||||| || || |||||||| || || ||||| ||||| |||||||||
Sbjct: 65 attctggcagcagatcattcggcttctgatctgatccgcggcatcgcaaccgagtgtggg 124
Query: 468 gttgattttgatgaggatccagaggcaatggttattgaccatatgaactatgccgtcaca 527
||||||||||||||||| || || || |||||||||||||| || || |||||| |||
Sbjct: 125 gttgattttgatgaggacccggaagcgatggttattgaccacattaattatgcctccact 184
Query: 528 gatgttgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtgata 587
|| |||||| |||||||||||||||||||| || ||||| || ||||| |||||||||
Sbjct: 185 gagtctgaaggggatcacaccttgattgctggcgatgatctgattcattcagatgtgata 244
Query: 588 ctagggtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaat 647
| ||||| ||||||||||||||||||||||| ||||||| |||||||| || |||
Sbjct: 245 ttggggtccaaaaagattgaggctcctgtattgcttcgagggattggacatgcggacaat 304
Query: 648 ccatcaaacagtttggttctgaaggttctatcagcctctccatcagcatatt-cagctaa 706
||||| ||||| |||||| |||||| |||||| ||||| || || || |||| |||| ||
Sbjct: 305 ccatccaacagcttggttttgaaggctctatctgcctcgccgtcggcgtattgcagcaaa 364
Query: 707 tccaaagactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttc 766
||| ||||||||| || | |||||| ||||| ||||| | |||||| ||| |||
Sbjct: 365 cccagggactaagttggcatgcgttccatctctcacagggtctggcatatcactgggttc 424
Query: 767 ggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttag 826
||||||||||| | || || ||||| ||| || ||||||||||||| ||| | ||||
Sbjct: 425 tgttatgcaggctacgaacaacgctcgtgtgttgatatctggatcactggattcgcttag 484
Query: 827 caaccggttcctgaagtctggtgttcaaaaggc 859
|||| ||||||| |||| |||||| || |||||
Sbjct: 485 caacaggttcctcaagtgtggtgtgcacaaggc 517
>gb|AL511118.1|AL511118 AL511118 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A21u 3',
mRNA sequence
Length = 518
Score = 242 bits (122), Expect = 3e-062
Identities = 253/294 (86%), Gaps = 2/294 (0%)
Strand = Plus / Minus
Query: 1093 ttcaatttttcatgatgagccc-ttacgttctgaaaactatgtcgactgacaacaagggt 1151
|||||||||||||||||||||| ||||||||| |||| ||||||||| ||||| | | |
Sbjct: 511 ttcaatttttcatgatgagccccttacgttcttaaaaatatgtcgaccgacaaaactgct 452
Query: 1152 -ttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttga 1210
|| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 451 cttatattcagcatccttcaaagttccggatgtttatggagttttccagttcaaagttga 392
Query: 1211 gtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcctta 1270
||||||||| || ||||| ||||| | ||| || |||||||||||||||| || || ||
Sbjct: 391 gtaccaaaggcttggatacactggcgtctctcttgcaaagcagattccagtgcggccata 332
Query: 1271 cagacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctcatt 1330
||| ||| | ||||||||||| |||||||| ||||||| |||||||| | ||||||||
Sbjct: 331 caggcatgacgagtatgagaggttcataacttcagcgtttccatactatgctgcctcatt 272
Query: 1331 ttcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
|||||||||||| || |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 271 ttcaacaatgggagccttcttcatattctcagttgcgtacctgtatcacaaata 218
>gb|CA032662.1|CA032662 HX13N04r HX Hordeum vulgare subsp. vulgare cDNA clone HX13N04
5-PRIME, mRNA sequence
Length = 474
Score = 236 bits (119), Expect = 2e-060
Identities = 239/279 (85%)
Strand = Plus / Plus
Query: 1106 gatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaac 1165
||||||||||||||||||||||| |||||| || ||||| | | | | |||||| || |
Sbjct: 1 gatgagcccttacgttctgaaaaatatgtcaaccgacaaaactgctctatattcagcatc 60
Query: 1166 cttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactggg 1225
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 61 cttcaaagttccggatgtttatggagttttccagttcaaagttgagtaccaaaggcttgg 120
Query: 1226 atatactggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagta 1285
||| ||||| | ||| || |||||||||||||||| || || ||||| ||| | |||||
Sbjct: 121 atacactggcgtctctcttgcaaagcagattccagtgcggccatacaggcatgacgagta 180
Query: 1286 tgagagattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgc 1345
|||||| |||||||| ||||||| |||||||| | |||||||||||||||||||| ||
Sbjct: 181 tgagaggttcataacttcagcgtttccatactatgctgcctcattttcaacaatgggagc 240
Query: 1346 tttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
|||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 241 cttcttcatattctcagttgcgtacctgtatcacaaata 279
>gb|AV916355.1|AV916355 AV916355 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12n02 5', mRNA sequence
Length = 345
Score = 210 bits (106), Expect = 1e-052
Identities = 284/342 (83%), Gaps = 1/342 (0%)
Strand = Plus / Plus
Query: 497 ggttattgaccatatgaactatgccgtcacagatgttgaaggtgatcacaccttg-attg 555
|||||||||||| || || |||||| ||| || |||||| |||||||||||| ||||
Sbjct: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60
Query: 556 ctggtgacgatcttatccattcggatgtgatactagggtctgaaaagattgaggctcctg 615
|||| || ||||| || || || ||||||||| | ||||| ||||||||||||||||||
Sbjct: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcctg 120
Query: 616 tattgtttcgaggaattggacacatggctaatccatcaaacagtttggttctgaaggttc 675
||||||||||||| |||||||| ||| |||||||| ||||| |||||| |||||||||
Sbjct: 121 tattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggttc 180
Query: 676 tatcagcctctccatcagcatattcagctaatccaaagactaagttagcgtctcctccat 735
|||| ||||| || || || |||||||| || ||| ||||||||| || || |||||
Sbjct: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240
Query: 736 cgctcactgggtcagctatatcattggtttcggttatgcaggcaagaaataatgctcggg 795
| ||||| ||||| || |||||| ||||||| ||||||||||| || || |||||||| |
Sbjct: 241 ctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgctcgtg 300
Query: 796 tgctgttatctggatcactcgatctgtttagcaaccggttcc 837
|| || ||||||||||||| ||| ||||||||||| ||||||
Sbjct: 301 tgttgatatctggatcactggatttgtttagcaacaggttcc 342
>gb|BI777078.2|BI777078 EBpi03_SQ001_N08_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_N08 5', mRNA sequence
Length = 246
Score = 206 bits (104), Expect = 2e-051
Identities = 191/220 (86%)
Strand = Plus / Plus
Query: 1165 ccttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactgg 1224
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 23 ccttcaaagttccggatgtttatggagttttccagttcaaagttgagtaccaaaggcttg 82
Query: 1225 gatatactggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagt 1284
|||| ||||| | ||| || |||||||||||||||| || || ||||| ||| | ||||
Sbjct: 83 gatacactggcgtctctcttgcaaagcagattccagtgcggccatacaggcatgacgagt 142
Query: 1285 atgagagattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtg 1344
||||||| |||||||| ||||||| |||||||| | |||||||||||||||||||| |
Sbjct: 143 atgagaggttcataacttcagcgtttccatactatgctgcctcattttcaacaatgggag 202
Query: 1345 ctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
| |||||| ||||||| ||| ||||||||| ||||||||
Sbjct: 203 ccttcttcatattctcagttgcgtacctgtatcacaaata 242
>gb|BU980621.1|BU980621 HA21D03r HA Hordeum vulgare subsp. vulgare cDNA clone HA21D03
5-PRIME, mRNA sequence
Length = 413
Score = 202 bits (102), Expect = 3e-050
Identities = 162/182 (89%)
Strand = Plus / Plus
Query: 153 ccccgcgggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcg 212
|||||||||||| |||||| || ||| | ||||| |||||||| || || || ||||||
Sbjct: 209 ccccgcgggcgcaagctgctggtgctcgtcgacgatctggccgtccgctcctcccactcg 268
Query: 213 gccttcttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgat 272
||||||||||||||||||||||| |||||| | ||||| || ||||||||||| |||||
Sbjct: 269 gccttcttcggctcgctccaggcccgcgggctagatctggagttccgcctcgcggacgac 328
Query: 273 cccaagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcc 332
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 329 cccaagctctcgctccaccgctacggtcagtacctctacgacggcctcgtcctcttcgcc 388
Query: 333 cc 334
||
Sbjct: 389 cc 390
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgc 103
|||||| |||||||||||||||||
Sbjct: 139 cgtcctcctcctcctcgccgccgc 162
>gb|AL509299.1|AL509299 AL509299 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F14u 3',
mRNA sequence
Length = 415
Score = 163 bits (82), Expect = 2e-038
Identities = 173/202 (85%), Gaps = 1/202 (0%)
Strand = Plus / Minus
Query: 1184 ttatggagttttccagttcaaagttgagtacc-aaagactgggatatactggtctgtctt 1242
|||||||||||||||||||||||||||||||| |||| || ||||| ||||| | |||
Sbjct: 415 ttatggagttttccagttcaaagttgagtacccaaaggcttggatacactggcgtctctc 356
Query: 1243 ttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcataacat 1302
|| |||||||||||||||| || || ||||| ||| | ||||||||||| |||||||| |
Sbjct: 355 ttgcaaagcagattccagtgcggccatacaggcatgacgagtatgagaggttcataactt 296
Query: 1303 cagcgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattctcgt 1362
|||||| |||||||| | |||||||||||||||||||| || |||||| |||||||
Sbjct: 295 cagcgtttccatactatgctgcctcattttcaacaatgggagccttcttcatattctcag 236
Query: 1363 ttgtgtacctgtaccacaaata 1384
||| ||||||||| ||||||||
Sbjct: 235 ttgcgtacctgtatcacaaata 214
>gb|BM440990.2|BM440990 EBed02_SQ002_B18_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ002_B18 5', mRNA sequence
Length = 253
Score = 147 bits (74), Expect = 1e-033
Identities = 192/229 (83%), Gaps = 3/229 (1%)
Strand = Plus / Plus
Query: 598 aaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccatcaaaca 657
||||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||
Sbjct: 17 aaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccatccaaca 76
Query: 658 gtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaagacta 717
| |||||| |||| |||||||| ||||| || || || |||||||| || |||| |||||
Sbjct: 77 gcttggttttgaaagttctatctgcctcgccgtcggcgtattcagcaaacccaaggacta 136
Query: 718 agttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggttatgcagg 777
|||| || || |||||| ||||| ||||| || |||||| ||||||| ||||||||||
Sbjct: 137 agttggcatccgttccatctctcacagggtcggccatatcactggtttctgttatgcagg 196
Query: 778 c-aagaaataatgctcgggtgctgttatctggatcactcgatctgttta 825
| ||||| ||||||| ||| || ||||||||||||| ||| ||||||
Sbjct: 197 ctaagaa--catgctcgtgtgttgatatctggatcactggatttgttta 243
>gb|BI960781.1|BI960781 HVSMEk0016A04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016A04f, mRNA sequence
Length = 700
Score = 113 bits (57), Expect = 2e-023
Identities = 253/317 (79%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 322 tgctcttcgccccctccacaccacgttttggtggatcagtggaccagaacgcagtcctcg 381
||||||||||||| | || || || ||||| ||||| | |||||| ||||| || || |
Sbjct: 13 tgctcttcgccccgttgaccccgcgctttggcggatcggaggaccacaacgctgttctgg 72
Query: 382 aatttattgatgctgggcatgacatgatcctggcggcagattcctctgcctctgatctca 441
| || || ||||||||||| |||||||| ||||| || ||| || || |||||||| |
Sbjct: 73 agttcatcgatgctgggcacgacatgattctggcagccgatcattcggcttctgatctga 132
Query: 442 ttcgtggcattgcaacagagtgtggggttgattttgatgaggatccagaggcaatggtta 501
| || ||||| ||||| ||||||||||||||| |||||||||| || || || |||| ||
Sbjct: 133 tccgcggcatcgcaaccgagtgtggggttgatcttgatgaggacccggaagctatggcta 192
Query: 502 ttgaccatatgaactatgccgtcacagatgttgaaggtgatcacaccttgattgctggtg 561
||||||| || || | |||| ||| || |||||| |||||||||||||||||||| |
Sbjct: 193 ttgaccacattaattctgcctccactgaatctgaaggggatcacaccttgattgctggcg 252
Query: 562 acgatcttatccattcggatgtgatactagggt-ctgaaaagattgaggctcctgtattg 620
| ||||| || || || ||||||||| | |||| | || ||||||| ||||||| ||||
Sbjct: 253 atgatctcattcactcagatgtgatattggggtccacaacagattgatgctcctggattg 312
Query: 621 tttcgaggaattggaca 637
| ||||| ||||||||
Sbjct: 313 ctccgagggattggaca 329
>gb|AL503708.1|AL503708 AL503708 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03C15T 5', mRNA sequence
Length = 489
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgcc 101
||||||||||||||||||||||
Sbjct: 71 cgtcctgctcctcctcgccgcc 92
>gb|AL508467.1|AL508467 AL508467 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08N16V 5',
mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 cgccacgtcctgctcctcctcgccgccgcc 104
|||| ||| |||||||||||||||||||||
Sbjct: 127 cgccgcgtgctgctcctcctcgccgccgcc 156
>gb|BI956594.1|BI956594 HVSMEn0004F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004F06f, mRNA sequence
Length = 809
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 cgccacgtcctgctcctcctcgccgccgcc 104
|||| ||| |||||||||||||||||||||
Sbjct: 134 cgccgcgtgctgctcctcctcgccgccgcc 163
>gb|BF628758.3|BF628758 HVSMEb0007O03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007O03f, mRNA sequence
Length = 697
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgcc 101
||||||||||||||||||||||
Sbjct: 183 cgtcctgctcctcctcgccgcc 204
>gb|BQ466754.1|BQ466754 HS01H18T HS Hordeum vulgare subsp. vulgare cDNA clone HS01H18
5-PRIME, mRNA sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgcc 101
||||||||||||||||||||||
Sbjct: 85 cgtcctgctcctcctcgccgcc 106
>gb|BQ466863.1|BQ466863 HS01N05T HS Hordeum vulgare subsp. vulgare cDNA clone HS01N05
5-PRIME, mRNA sequence
Length = 680
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgcc 101
||||||||||||||||||||||
Sbjct: 85 cgtcctgctcctcctcgccgcc 106
>gb|BQ467067.1|BQ467067 HS02H18r HS Hordeum vulgare subsp. vulgare cDNA clone HS02H18
5-PRIME, mRNA sequence
Length = 551
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgcc 101
||||||||||||||||||||||
Sbjct: 85 cgtcctgctcctcctcgccgcc 106
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 180,065
Number of Sequences: 312970
Number of extensions: 180065
Number of successful extensions: 53897
Number of sequences better than 0.5: 119
Number of HSP's better than 0.5 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53692
Number of HSP's gapped (non-prelim): 153
length of query: 1775
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1756
effective length of database: 169,188,109
effective search space: 297094319404
effective search space used: 297094319404
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)