BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCN28g01.yg.2.1
         (513 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819735.1|CN819735  HRO4403_E05_J09ZS5 Lib AA069E1X Aven...    36   0.029
gb|CN820316.1|CN820316  HRO4418_A04_A08ZS5 Lib AA069E1X Aven...    36   0.029
gb|CN815008.1|CN815008  HRO4504_H03_P06ZS5 Lib AA071E1X Aven...    32   0.46 
gb|CN815855.1|CN815855  HRO4511_C04_F07ZS5 Lib AA071E1X Aven...    32   0.46 
gb|CN821011.1|CN821011  HRO4422_E07_I14ZS5 Lib AA069E1X Aven...    32   0.46 

>gb|CN819735.1|CN819735 HRO4403_E05_J09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4403_E05_J09, mRNA
           sequence
          Length = 407

 Score = 36.2 bits (18), Expect = 0.029
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 287 tcattctgttctgctagt 304
           ||||||||||||||||||
Sbjct: 142 tcattctgttctgctagt 159



>gb|CN820316.1|CN820316 HRO4418_A04_A08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4418_A04_A08, mRNA
           sequence
          Length = 328

 Score = 36.2 bits (18), Expect = 0.029
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 287 tcattctgttctgctagt 304
           ||||||||||||||||||
Sbjct: 44  tcattctgttctgctagt 61



>gb|CN815008.1|CN815008 HRO4504_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4504_H03_P06, mRNA sequence
          Length = 769

 Score = 32.2 bits (16), Expect = 0.46
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 252 ttttttgcaaataaaaaaggatgg 275
           |||||||||||  |||||||||||
Sbjct: 31  ttttttgcaaaataaaaaggatgg 54



>gb|CN815855.1|CN815855 HRO4511_C04_F07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_C04_F07, mRNA sequence
          Length = 371

 Score = 32.2 bits (16), Expect = 0.46
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 103 catcatccctcttacagttc 122
           ||||||||||| ||||||||
Sbjct: 160 catcatccctcctacagttc 179



>gb|CN821011.1|CN821011 HRO4422_E07_I14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_E07_I14, mRNA
           sequence
          Length = 636

 Score = 32.2 bits (16), Expect = 0.46
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 219 tttcaagaaaatttttccat 238
           |||||||||||| |||||||
Sbjct: 163 tttcaagaaaatatttccat 144



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1499
Number of Sequences: 8143
Number of extensions: 1499
Number of successful extensions: 432
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 5
length of query: 513
length of database: 4,702,463
effective HSP length: 16
effective length of query: 497
effective length of database: 4,572,175
effective search space: 2272370975
effective search space used: 2272370975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)