BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.003
gb|CN820645.1|CN820645 HRO4415_G08_N15ZS5 Lib AA069E1X Aven... 30 0.84
gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta... 30 0.84
gb|CN816047.1|CN816047 HRO4516_C10_F20ZS5 Lib AA071E1X Aven... 28 3.3
gb|CN817307.1|CN817307 HRO4454_D05_H10ZS5 Lib AA070E1X Aven... 28 3.3
gb|CN817316.1|CN817316 HRO4465_A05_B09ZS5 Lib AA070E1X Aven... 28 3.3
gb|CN818071.1|CN818071 HRO4472_B06_C12ZS5 Lib AA070E1X Aven... 28 3.3
gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Aven... 28 3.3
gb|CN819539.1|CN819539 HRO4401_D01_G01ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819558.1|CN819558 HRO4401_E11_I21ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819704.1|CN819704 HRO4403_B09_D17ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819732.1|CN819732 HRO4403_E02_J03ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819877.1|CN819877 HRO4407_B11_D21ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819879.1|CN819879 HRO4407_C03_F05ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819907.1|CN819907 HRO4407_F09_L17ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN819908.1|CN819908 HRO4407_F10_L19ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820001.1|CN820001 HRO4409_G10_M19ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820007.1|CN820007 HRO4409_H06_O11ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820022.1|CN820022 HRO4410_C01_E02ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820036.1|CN820036 HRO4410_D06_G12ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820245.1|CN820245 HRO4417_B09_C17ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820268.1|CN820268 HRO4417_D11_G21ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820335.1|CN820335 HRO4418_B12_C24ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820369.1|CN820369 HRO4418_E12_I24ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820380.1|CN820380 HRO4418_F12_K24ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820391.1|CN820391 HRO4418_G11_M22ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820401.1|CN820401 HRO4418_H10_O20ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820429.1|CN820429 HRO4419_C05_F09ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820430.1|CN820430 HRO4419_C06_F11ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820473.1|CN820473 HRO4419_G06_N11ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820529.1|CN820529 HRO4413_D08_G15ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820639.1|CN820639 HRO4415_G02_N03ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN820665.1|CN820665 HRO4416_A05_B10ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN821121.1|CN821121 HRO4427_G03_N05ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN821292.1|CN821292 HRO4423_F10_L19ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN821319.1|CN821319 HRO4424_A02_B04ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN821357.1|CN821357 HRO4424_D06_H12ZS5 Lib AA069E1X Aven... 28 3.3
gb|CN821580.1|CN821580 HRO4426_H09_O18ZS5 Lib AA069E1X Aven... 28 3.3
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 28 3.3
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.003
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggta 23
>gb|CN820645.1|CN820645 HRO4415_G08_N15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G08_N15, mRNA
sequence
Length = 646
Score = 30.2 bits (15), Expect = 0.84
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 tacatcccttccttt 183
|||||||||||||||
Sbjct: 558 tacatcccttccttt 544
>gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta subunit precursor (P60b) mRNA,
complete cds
Length = 1923
Score = 30.2 bits (15), Expect = 0.84
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 tacatcccttccttt 183
|||||||||||||||
Sbjct: 1835 tacatcccttccttt 1821
>gb|CN816047.1|CN816047 HRO4516_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_C10_F20, mRNA sequence
Length = 771
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 ctgaagaaatcaaa 75
||||||||||||||
Sbjct: 325 ctgaagaaatcaaa 312
>gb|CN817307.1|CN817307 HRO4454_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_D05_H10, mRNA sequence
Length = 478
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 catgtattcatggt 206
||||||||||||||
Sbjct: 433 catgtattcatggt 420
>gb|CN817316.1|CN817316 HRO4465_A05_B09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_A05_B09, mRNA sequence
Length = 686
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 ttgccatttgctat 135
||||||||||||||
Sbjct: 332 ttgccatttgctat 319
>gb|CN818071.1|CN818071 HRO4472_B06_C12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_B06_C12, mRNA sequence
Length = 831
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 tattcatggtgagt 210
||||||||||||||
Sbjct: 94 tattcatggtgagt 107
>gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4467_F11_K21, mRNA
sequence
Length = 452
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggc 14
||||||||||||||
Sbjct: 33 gcggccgcccgggc 46
>gb|CN819539.1|CN819539 HRO4401_D01_G01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_D01_G01, mRNA
sequence
Length = 547
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 448 acatcccttccttt 435
>gb|CN819558.1|CN819558 HRO4401_E11_I21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_E11_I21, mRNA
sequence
Length = 537
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 465 acatcccttccttt 452
>gb|CN819704.1|CN819704 HRO4403_B09_D17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B09_D17, mRNA
sequence
Length = 433
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 358 acatcccttccttt 345
>gb|CN819732.1|CN819732 HRO4403_E02_J03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_E02_J03, mRNA
sequence
Length = 598
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 511 acatcccttccttt 498
>gb|CN819877.1|CN819877 HRO4407_B11_D21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_B11_D21, mRNA
sequence
Length = 595
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 485 acatcccttccttt 472
>gb|CN819879.1|CN819879 HRO4407_C03_F05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C03_F05, mRNA
sequence
Length = 623
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 534 acatcccttccttt 521
>gb|CN819907.1|CN819907 HRO4407_F09_L17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_F09_L17, mRNA
sequence
Length = 467
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 447 acatcccttccttt 434
>gb|CN819908.1|CN819908 HRO4407_F10_L19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_F10_L19, mRNA
sequence
Length = 633
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 548 acatcccttccttt 535
>gb|CN820001.1|CN820001 HRO4409_G10_M19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_G10_M19, mRNA
sequence
Length = 565
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 448 acatcccttccttt 435
>gb|CN820007.1|CN820007 HRO4409_H06_O11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_H06_O11, mRNA
sequence
Length = 690
Score = 28.2 bits (14), Expect = 3.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 112 ttgttcgccattgccatt 129
|||||| |||||||||||
Sbjct: 80 ttgttccccattgccatt 63
>gb|CN820022.1|CN820022 HRO4410_C01_E02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_C01_E02, mRNA
sequence
Length = 668
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 tttgccaacttgca 194
||||||||||||||
Sbjct: 191 tttgccaacttgca 178
>gb|CN820036.1|CN820036 HRO4410_D06_G12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_D06_G12, mRNA
sequence
Length = 825
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 750 acatcccttccttt 737
>gb|CN820245.1|CN820245 HRO4417_B09_C17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_B09_C17, mRNA
sequence
Length = 740
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 66 acatcccttccttt 79
>gb|CN820268.1|CN820268 HRO4417_D11_G21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_D11_G21, mRNA
sequence
Length = 634
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 563 acatcccttccttt 550
>gb|CN820335.1|CN820335 HRO4418_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B12_C24, mRNA
sequence
Length = 561
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 481 acatcccttccttt 468
>gb|CN820369.1|CN820369 HRO4418_E12_I24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_E12_I24, mRNA
sequence
Length = 814
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 70 acatcccttccttt 83
>gb|CN820380.1|CN820380 HRO4418_F12_K24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_F12_K24, mRNA
sequence
Length = 610
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 ttcctttgccaact 190
||||||||||||||
Sbjct: 108 ttcctttgccaact 95
>gb|CN820391.1|CN820391 HRO4418_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G11_M22, mRNA
sequence
Length = 498
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggc 14
||||||||||||||
Sbjct: 49 gcggccgcccgggc 62
>gb|CN820401.1|CN820401 HRO4418_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_H10_O20, mRNA
sequence
Length = 730
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 664 acatcccttccttt 651
>gb|CN820429.1|CN820429 HRO4419_C05_F09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_C05_F09, mRNA
sequence
Length = 541
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 448 acatcccttccttt 435
>gb|CN820430.1|CN820430 HRO4419_C06_F11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_C06_F11, mRNA
sequence
Length = 688
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 539 acatcccttccttt 526
>gb|CN820473.1|CN820473 HRO4419_G06_N11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_G06_N11, mRNA
sequence
Length = 455
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 380 acatcccttccttt 367
>gb|CN820529.1|CN820529 HRO4413_D08_G15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D08_G15, mRNA
sequence
Length = 710
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 683 acatcccttccttt 670
>gb|CN820639.1|CN820639 HRO4415_G02_N03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G02_N03, mRNA
sequence
Length = 641
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 560 acatcccttccttt 547
>gb|CN820665.1|CN820665 HRO4416_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_A05_B10, mRNA
sequence
Length = 442
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 ttgttcgccattgc 125
||||||||||||||
Sbjct: 116 ttgttcgccattgc 103
>gb|CN821121.1|CN821121 HRO4427_G03_N05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_G03_N05, mRNA
sequence
Length = 566
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 496 acatcccttccttt 483
>gb|CN821292.1|CN821292 HRO4423_F10_L19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F10_L19, mRNA
sequence
Length = 779
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 704 acatcccttccttt 691
>gb|CN821319.1|CN821319 HRO4424_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A02_B04, mRNA
sequence
Length = 571
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 485 acatcccttccttt 472
>gb|CN821357.1|CN821357 HRO4424_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_D06_H12, mRNA
sequence
Length = 548
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 447 acatcccttccttt 434
>gb|CN821580.1|CN821580 HRO4426_H09_O18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_H09_O18, mRNA
sequence
Length = 432
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 acatcccttccttt 183
||||||||||||||
Sbjct: 357 acatcccttccttt 344
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete sequence
Length = 16091
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 gcaggtactgaagt 26
||||||||||||||
Sbjct: 10421 gcaggtactgaagt 10434
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 865
Number of Sequences: 8143
Number of extensions: 865
Number of successful extensions: 168
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 39
length of query: 247
length of database: 4,702,463
effective HSP length: 15
effective length of query: 232
effective length of database: 4,580,318
effective search space: 1062633776
effective search space used: 1062633776
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)