BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 58 4e-009
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 50 1e-006
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 42 3e-004
gb|CN815198.1|CN815198 HRO4507_A02_B03ZS5 Lib AA071E1X Aven... 32 0.25
gb|CN819480.1|CN819480 HRO4406_E07_I14ZS5 Lib AA069E1X Aven... 32 0.25
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 58.0 bits (29), Expect = 4e-009
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttcttt 284
|||||||||||||| ||||||||||||||||||
Sbjct: 110 tcatggggccccctcttcgggaagctcttcttt 142
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 50.1 bits (25), Expect = 1e-006
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 250 aatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||| || |||||||| ||||||||||||||
Sbjct: 101 aatcatgggggccgctgttcggaaagctcttctttgc 137
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 42.1 bits (21), Expect = 3e-004
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 250 aatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||| || || ||||| ||||||||||||||
Sbjct: 12 aatcatgggggccgctcttcggaaagctcttctttgc 48
>gb|CN815198.1|CN815198 HRO4507_A02_B03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_A02_B03, mRNA sequence
Length = 458
Score = 32.2 bits (16), Expect = 0.25
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 266 gttcgggaagctcttc 281
||||||||||||||||
Sbjct: 74 gttcgggaagctcttc 89
>gb|CN819480.1|CN819480 HRO4406_E07_I14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E07_I14, mRNA
sequence
Length = 595
Score = 32.2 bits (16), Expect = 0.25
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 112 agggcggagacgacgaggag 131
||||||| ||||||||||||
Sbjct: 204 agggcggtgacgacgaggag 223
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 463
Number of Sequences: 8143
Number of extensions: 463
Number of successful extensions: 106
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 5
length of query: 286
length of database: 4,702,463
effective HSP length: 15
effective length of query: 271
effective length of database: 4,580,318
effective search space: 1241266178
effective search space used: 1241266178
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)