BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH2g03.yg.2.1
         (537 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815619.1|CN815619  HRO4513_F09_K17ZS5 Lib AA071E1X Aven...    34   0.12 
gb|CN816816.1|CN816816  HRO4525_B04_C07ZS5 Lib AA071E1X Aven...    34   0.12 
gb|CN817636.1|CN817636  HRO4458_G10_N20ZS5 Lib AA070E1X Aven...    32   0.48 

>gb|CN815619.1|CN815619 HRO4513_F09_K17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4513_F09_K17, mRNA sequence
          Length = 313

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 287 aatcaagaagattgaaa 303
           |||||||||||||||||
Sbjct: 66  aatcaagaagattgaaa 82



>gb|CN816816.1|CN816816 HRO4525_B04_C07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4525_B04_C07, mRNA sequence
          Length = 763

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 285 agaatcaagaagattgaaaag 305
           |||| ||||||||||||||||
Sbjct: 349 agaagcaagaagattgaaaag 369



>gb|CN817636.1|CN817636 HRO4458_G10_N20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4458_G10_N20, mRNA sequence
          Length = 530

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 107 aaagactcaatgcaag 122
           ||||||||||||||||
Sbjct: 247 aaagactcaatgcaag 232



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1042
Number of Sequences: 8143
Number of extensions: 1042
Number of successful extensions: 248
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 3
length of query: 537
length of database: 4,702,463
effective HSP length: 16
effective length of query: 521
effective length of database: 4,572,175
effective search space: 2382103175
effective search space used: 2382103175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)