BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCA10g02.yg.2.1
         (277 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820768.1|CN820768  HRO4414_E10_I20ZS5 Lib AA069E1X Aven...    32   0.24 
gb|CN820908.1|CN820908  HRO4421_C11_E21ZS5 Lib AA069E1X Aven...    32   0.24 

>gb|CN820768.1|CN820768 HRO4414_E10_I20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_E10_I20, mRNA
           sequence
          Length = 559

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 173 tcccctctccatcgtt 188
           ||||||||||||||||
Sbjct: 23  tcccctctccatcgtt 38



>gb|CN820908.1|CN820908 HRO4421_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4421_C11_E21, mRNA
           sequence
          Length = 685

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 240 aggagatgacacttga 255
           ||||||||||||||||
Sbjct: 53  aggagatgacacttga 68



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 528
Number of Sequences: 8143
Number of extensions: 528
Number of successful extensions: 111
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 2
length of query: 277
length of database: 4,702,463
effective HSP length: 15
effective length of query: 262
effective length of database: 4,580,318
effective search space: 1200043316
effective search space used: 1200043316
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)