BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 210 9e-055
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 82 6e-016
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 72 5e-013
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 36 0.030
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 34 0.12
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 34 0.12
gb|CN819527.1|CN819527 HRO4401_B12_C23ZS5 Lib AA069E1X Aven... 32 0.47
gb|CN821350.1|CN821350 HRO4424_C11_F22ZS5 Lib AA069E1X Aven... 32 0.47
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 210 bits (106), Expect = 9e-055
Identities = 190/218 (87%)
Strand = Plus / Minus
Query: 272 cccttggtcctgacgatgaagggatcgatcctgacccagagcagggagaagatggaggcc 331
||||||| | || ||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 300 cccttggacttggcgatgaagggatcaatcctgacccagacgagggagaagatggaggcg 241
Query: 332 agcagcacggaccagatgacgacaatggtgggcgtccggttctggcgccccatgagcccc 391
||||| || ||||||| ||||| ||||||||||| ||||| || | |||||||||||||
Sbjct: 240 agcaggacagaccagagcacgacgatggtgggcgtgcggttttgcctccccatgagcccc 181
Query: 392 ttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaagagc 451
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 180 ttgaggaatgggtagaggtggacgatgacccagaaggaaaagaagagcttcccgaagagg 121
Query: 452 gggccccacgactggtacccgttgttgatggcgtcgga 489
|||||||| ||| ||| || ||||||| ||||||||
Sbjct: 120 gggccccatgacccgtagccattgttgactgcgtcgga 83
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 81.8 bits (41), Expect = 6e-016
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
||||| || ||||||||||||||||| | ||| || || ||||||||||| |||||||||
Sbjct: 96 cccataagacccttgaggaacgggtataagtgaacaatcacccagaaggcaaagaagagc 37
Query: 440 ttgccgaagagcgggccccacgactggta 468
|| ||||||||||| ||||| || |||||
Sbjct: 36 tttccgaagagcggcccccatgattggta 8
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 71.9 bits (36), Expect = 5e-013
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 380 cccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagc 439
||||| || ||||||||||| ||||| | ||| || || ||||||||||| |||||||||
Sbjct: 185 cccataagacccttgaggaatgggtataagtgaacaatcacccagaaggcaaagaagagc 126
Query: 440 ttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
|| ||||| ||||| ||||| || ||||| || ||||||||||
Sbjct: 125 tttccgaacagcggcccccatgattggtaaccactgttgatggc 82
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 36.2 bits (18), Expect = 0.030
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 389 cccttgaggaacgggtagaggtggac 414
||||||||||| |||||||| |||||
Sbjct: 43 cccttgaggaatgggtagagatggac 18
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 423 agaaggcgaagaagagc 439
|||||||||||||||||
Sbjct: 52 agaaggcgaagaagagc 68
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 423 agaaggcgaagaagagc 439
|||||||||||||||||
Sbjct: 11 agaaggcgaagaagagc 27
>gb|CN819527.1|CN819527 HRO4401_B12_C23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_B12_C23, mRNA
sequence
Length = 469
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 371 ttctggcgccccatga 386
||||||||||||||||
Sbjct: 75 ttctggcgccccatga 60
>gb|CN821350.1|CN821350 HRO4424_C11_F22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C11_F22, mRNA
sequence
Length = 654
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 371 ttctggcgccccatga 386
||||||||||||||||
Sbjct: 230 ttctggcgccccatga 215
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1359
Number of Sequences: 8143
Number of extensions: 1359
Number of successful extensions: 379
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 10
length of query: 526
length of database: 4,702,463
effective HSP length: 16
effective length of query: 510
effective length of database: 4,572,175
effective search space: 2331809250
effective search space used: 2331809250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)