BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBL6b07.xg.2.1
         (644 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814886.1|CN814886  HRO4503_E10_J19ZS5 Lib AA071E1X Aven...    42   6e-004
gb|CN814884.1|CN814884  HRO4503_E08_J15ZS5 Lib AA071E1X Aven...    38   0.009

>gb|CN814886.1|CN814886 HRO4503_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_E10_J19, mRNA sequence
          Length = 889

 Score = 42.1 bits (21), Expect = 6e-004
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 265 cgagaagagcgacgtgtacag 285
           |||||||||||||||||||||
Sbjct: 391 cgagaagagcgacgtgtacag 411



>gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_E08_J15, mRNA sequence
          Length = 830

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 269 aagagcgacgtgtacagcttcgg 291
           ||||||||||||||||| |||||
Sbjct: 355 aagagcgacgtgtacagtttcgg 377



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1245
Number of Sequences: 8143
Number of extensions: 1245
Number of successful extensions: 334
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 3
length of query: 644
length of database: 4,702,463
effective HSP length: 16
effective length of query: 628
effective length of database: 4,572,175
effective search space: 2871325900
effective search space used: 2871325900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)