BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818275.1|CN818275 HRO4470_C10_F20ZS5 Lib AA070E1X Aven... 32 0.44
gb|CN818631.1|CN818631 HRO4467_D05_G09ZS5 Lib AA070E1X Aven... 32 0.44
>gb|CN818275.1|CN818275 HRO4470_C10_F20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C10_F20, mRNA sequence
Length = 387
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 gcaagacccacttcga 258
||||||||||||||||
Sbjct: 16 gcaagacccacttcga 31
>gb|CN818631.1|CN818631 HRO4467_D05_G09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_D05_G09, mRNA sequence
Length = 464
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 gcaagacccacttcga 258
||||||||||||||||
Sbjct: 73 gcaagacccacttcga 88
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 608
Number of Sequences: 8143
Number of extensions: 608
Number of successful extensions: 132
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 2
length of query: 494
length of database: 4,702,463
effective HSP length: 16
effective length of query: 478
effective length of database: 4,572,175
effective search space: 2185499650
effective search space used: 2185499650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)