BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819961.1|CN819961 HRO4409_C01_E01ZS5 Lib AA069E1X Aven... 289 3e-078
gb|CN816734.1|CN816734 HRO4524_B08_D16ZS5 Lib AA071E1X Aven... 34 0.25
gb|CN818124.1|CN818124 HRO4471_F05_K09ZS5 Lib AA070E1X Aven... 34 0.25
>gb|CN819961.1|CN819961 HRO4409_C01_E01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_C01_E01, mRNA
sequence
Length = 540
Score = 289 bits (146), Expect = 3e-078
Identities = 319/378 (84%), Gaps = 9/378 (2%)
Strand = Plus / Plus
Query: 418 attattaaggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccact 477
||||||| |||||||| ||||||||||| |||||||| || || || |||||||||
Sbjct: 9 attattactgggatgggattcaaaaatgaggtttcaaagaagcttaatgcggagcccact 68
Query: 478 cttgaatttgcaattgtacaagatgcagatcgcctggatgcaattggggcaattggtatt 537
||||| ||||||||||| |||||||||||||| |||||||| ||| ||| ||
Sbjct: 69 cttgagtttgcaattgtgcaagatgcagatcgtctggatgc---------aatcggtgtt 119
Query: 538 gcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctg 597
||||||||||||||||| || || ||||||||||| ||||| |||||||||| | | ||
Sbjct: 120 gcaagatgttttacatacggagggagcaagaacagtgcattgcatgatcctaaagtactt 179
Query: 598 ccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatc 657
||||| |||| |||| ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct: 180 ccacgggataatctgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaatc 239
Query: 658 aatcattttcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaa 717
|||||||| ||||||||||| || || ||||||||||||||||||||||||| ||||||
Sbjct: 240 aatcatttccatgagaagctcttcaagttgaaggacatgatgaagacagaggctgggaaa 299
Query: 718 aggagagctgagaaaaggcataggttcatggaggaatttgtggctgaattctacgaagag 777
| |||||| ||||||||||| | |||||||||| | |||||| | ||||||||||| |||
Sbjct: 300 aagagagcggagaaaaggcacatgttcatggagaattttgtgtccgaattctacgaggag 359
Query: 778 tggagtggcagggcttga 795
||||||||||| ||||||
Sbjct: 360 tggagtggcagagcttga 377
>gb|CN816734.1|CN816734 HRO4524_B08_D16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_B08_D16, mRNA sequence
Length = 818
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 362 agatgtttcttcaagag 378
|||||||||||||||||
Sbjct: 123 agatgtttcttcaagag 139
>gb|CN818124.1|CN818124 HRO4471_F05_K09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_F05_K09, mRNA sequence
Length = 682
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1084 cacctgaaggtcaagcg 1100
|||||||||||||||||
Sbjct: 260 cacctgaaggtcaagcg 244
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3494
Number of Sequences: 8143
Number of extensions: 3494
Number of successful extensions: 849
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 4
length of query: 1105
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1089
effective length of database: 4,572,175
effective search space: 4979098575
effective search space used: 4979098575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)