BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ2b01.yg.2.1
(541 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ548072.1|BQ548072 CDO57-3 CDO Avena sativa cDNA clone ... 32 0.48
gb|CK780253.1|CK780253 umn212 UMN cDNA from oat Avena sativ... 32 0.48
gb|CN817081.1|CN817081 HRO4528_A07_B14ZS5 Lib AA071E1X Aven... 32 0.48
gb|CN819834.1|CN819834 HRO4404_F03_L06ZS5 Lib AA069E1X Aven... 32 0.48
gb|AY038004.1| Avena sativa isolate Pc68LrkB2 sequence cont... 32 0.48
gb|AY038007.1| Avena sativa isolate Pc68LrkB5 sequence cont... 32 0.48
gb|AY038013.1| Avena sativa isolate Pc68LrkC5 sequence cont... 32 0.48
>gb|BQ548072.1|BQ548072 CDO57-3 CDO Avena sativa cDNA clone CDO57 3', mRNA sequence
Length = 706
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 136 agaagtgcattgagct 151
||||||||||||||||
Sbjct: 512 agaagtgcattgagct 497
>gb|CK780253.1|CK780253 umn212 UMN cDNA from oat Avena sativa cDNA clone JMT4_E10 5', mRNA
sequence
Length = 620
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 ggcagatactaacaaa 226
||||||||||||||||
Sbjct: 220 ggcagatactaacaaa 205
>gb|CN817081.1|CN817081 HRO4528_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A07_B14, mRNA sequence
Length = 745
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 ggcagatactaacaaa 226
||||||||||||||||
Sbjct: 274 ggcagatactaacaaa 259
>gb|CN819834.1|CN819834 HRO4404_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_F03_L06, mRNA
sequence
Length = 588
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 atgatgtccttgatcg 34
||||||||||||||||
Sbjct: 197 atgatgtccttgatcg 182
>gb|AY038004.1| Avena sativa isolate Pc68LrkB2 sequence containing transposon and
repetitive DNA linked to receptor kinase gene
Length = 3930
Score = 32.2 bits (16), Expect = 0.48
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 94 tcatggatgatgttatttcc 113
|||||||||||| |||||||
Sbjct: 2270 tcatggatgatgatatttcc 2251
>gb|AY038007.1| Avena sativa isolate Pc68LrkB5 sequence containing retrotransposon
and repetitive DNA linked to receptor kinase gene
Length = 1918
Score = 32.2 bits (16), Expect = 0.48
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 94 tcatggatgatgttatttcc 113
|||||||||||| |||||||
Sbjct: 746 tcatggatgatgatatttcc 727
>gb|AY038013.1| Avena sativa isolate Pc68LrkC5 sequence containing retrotransposon
and repetitive DNA linked to receptor kinase gene
Length = 2396
Score = 32.2 bits (16), Expect = 0.48
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 94 tcatggatgatgttatttcc 113
|||||||||||| |||||||
Sbjct: 1658 tcatggatgatgatatttcc 1677
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1233
Number of Sequences: 8143
Number of extensions: 1233
Number of successful extensions: 333
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 7
length of query: 541
length of database: 4,702,463
effective HSP length: 16
effective length of query: 525
effective length of database: 4,572,175
effective search space: 2400391875
effective search space used: 2400391875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)