BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816746.1|CN816746 HRO4524_C10_F20ZS5 Lib AA071E1X Aven... 32 0.48
gb|CN818764.1|CN818764 HRO4468_D02_G04ZS5 Lib AA070E1X Aven... 32 0.48
>gb|CN816746.1|CN816746 HRO4524_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_C10_F20, mRNA sequence
Length = 754
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 24 cgacgtggctgctgac 39
||||||||||||||||
Sbjct: 487 cgacgtggctgctgac 472
>gb|CN818764.1|CN818764 HRO4468_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_D02_G04, mRNA sequence
Length = 718
Score = 32.2 bits (16), Expect = 0.48
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 493 cataacatgatattagctcatgca 516
|||||||||||||| || ||||||
Sbjct: 161 cataacatgatattggcacatgca 184
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 980
Number of Sequences: 8143
Number of extensions: 980
Number of successful extensions: 234
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 2
length of query: 541
length of database: 4,702,463
effective HSP length: 16
effective length of query: 525
effective length of database: 4,572,175
effective search space: 2400391875
effective search space used: 2400391875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)