BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814873.1|CN814873 HRO4503_D08_H15ZS5 Lib AA071E1X Aven... 34 0.18
gb|CN814880.1|CN814880 HRO4503_E04_J07ZS5 Lib AA071E1X Aven... 34 0.18
gb|CN816327.1|CN816327 HRO4519_E02_J03ZS5 Lib AA071E1X Aven... 34 0.18
gb|CN820248.1|CN820248 HRO4417_B12_C23ZS5 Lib AA069E1X Aven... 34 0.18
gb|CN820810.1|CN820810 HRO4420_B05_D10ZS5 Lib AA069E1X Aven... 34 0.18
gb|CN819436.1|CN819436 HRO4406_C02_E04ZS5 Lib AA069E1X Aven... 32 0.73
gb|CN814882.1|CN814882 HRO4503_E06_J11ZS5 Lib AA071E1X Aven... 30 2.9
gb|CN814918.1|CN814918 HRO4503_H08_P15ZS5 Lib AA071E1X Aven... 30 2.9
gb|CN815251.1|CN815251 HRO4507_E12_J23ZS5 Lib AA071E1X Aven... 30 2.9
gb|CN815722.1|CN815722 HRO4514_G10_M20ZS5 Lib AA071E1X Aven... 30 2.9
gb|CN816401.1|CN816401 HRO4520_C12_F24ZS5 Lib AA071E1X Aven... 30 2.9
gb|CN816706.1|CN816706 HRO4523_G11_N21ZS5 Lib AA071E1X Aven... 30 2.9
gb|CN820550.1|CN820550 HRO4413_F08_K15ZS5 Lib AA069E1X Aven... 30 2.9
gb|CN821067.1|CN821067 HRO4427_B07_D13ZS5 Lib AA069E1X Aven... 30 2.9
emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (c... 30 2.9
dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag... 30 2.9
emb|AJ269530.1|AST269530 Avena strigosa Ty1-copia retrotran... 30 2.9
>gb|CN814873.1|CN814873 HRO4503_D08_H15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D08_H15, mRNA sequence
Length = 449
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 139 agaggaaaatggaagag 155
>gb|CN814880.1|CN814880 HRO4503_E04_J07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E04_J07, mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 156 agaggaaaatggaagag 172
>gb|CN816327.1|CN816327 HRO4519_E02_J03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_E02_J03, mRNA sequence
Length = 714
Score = 34.2 bits (17), Expect = 0.18
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 443 cttgctgcttgttttgagaag 463
|||||||| ||||||||||||
Sbjct: 369 cttgctgcatgttttgagaag 349
>gb|CN820248.1|CN820248 HRO4417_B12_C23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_B12_C23, mRNA
sequence
Length = 388
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 90 agaggaaaatggaagag 106
>gb|CN820810.1|CN820810 HRO4420_B05_D10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_B05_D10, mRNA
sequence
Length = 441
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 148 agaggaaaatggaagag 164
>gb|CN819436.1|CN819436 HRO4406_C02_E04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_C02_E04, mRNA
sequence
Length = 754
Score = 32.2 bits (16), Expect = 0.73
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 cccacttcggcctcgg 93
||||||||||||||||
Sbjct: 703 cccacttcggcctcgg 688
>gb|CN814882.1|CN814882 HRO4503_E06_J11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E06_J11, mRNA sequence
Length = 687
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 452 tgttttgagaagcat 466
|||||||||||||||
Sbjct: 334 tgttttgagaagcat 320
>gb|CN814918.1|CN814918 HRO4503_H08_P15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_H08_P15, mRNA sequence
Length = 812
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 cgccttcgccgctgc 159
|||||||||||||||
Sbjct: 550 cgccttcgccgctgc 564
>gb|CN815251.1|CN815251 HRO4507_E12_J23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_E12_J23, mRNA sequence
Length = 692
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 553 aactagaacatggag 567
|||||||||||||||
Sbjct: 651 aactagaacatggag 665
>gb|CN815722.1|CN815722 HRO4514_G10_M20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G10_M20, mRNA sequence
Length = 837
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 462 agcatgtacagacat 476
|||||||||||||||
Sbjct: 510 agcatgtacagacat 496
>gb|CN816401.1|CN816401 HRO4520_C12_F24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C12_F24, mRNA sequence
Length = 735
Score = 30.2 bits (15), Expect = 2.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 320 ttctcagaggaaaatggaa 338
||||||||||| |||||||
Sbjct: 22 ttctcagaggacaatggaa 40
>gb|CN816706.1|CN816706 HRO4523_G11_N21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_G11_N21, mRNA sequence
Length = 795
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 754 ttctccattgaaacg 768
|||||||||||||||
Sbjct: 161 ttctccattgaaacg 147
>gb|CN820550.1|CN820550 HRO4413_F08_K15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_F08_K15, mRNA
sequence
Length = 247
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 460 gaagcatgtacagac 474
|||||||||||||||
Sbjct: 107 gaagcatgtacagac 93
>gb|CN821067.1|CN821067 HRO4427_B07_D13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B07_D13, mRNA
sequence
Length = 497
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 452 tgttttgagaagcat 466
|||||||||||||||
Sbjct: 108 tgttttgagaagcat 94
>emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (clone ABF2)
Length = 1283
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccg 245
|||||||||||||||
Sbjct: 1093 cggcgctcgtcaccg 1107
>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for
polyprotein
Length = 8665
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 462 agcatgtacagacat 476
|||||||||||||||
Sbjct: 2676 agcatgtacagacat 2690
>emb|AJ269530.1|AST269530 Avena strigosa Ty1-copia retrotransposon TAS1:GAG, AP and IN
regions
Length = 2264
Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 462 agcatgtacagacat 476
|||||||||||||||
Sbjct: 118 agcatgtacagacat 132
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2097
Number of Sequences: 8143
Number of extensions: 2097
Number of successful extensions: 546
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 22
length of query: 808
length of database: 4,702,463
effective HSP length: 16
effective length of query: 792
effective length of database: 4,572,175
effective search space: 3621162600
effective search space used: 3621162600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)