BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815175.1|CN815175 HRO4506_F12_K24ZS5 Lib AA071E1X Aven... 32 0.55
gb|BE439183.1|BE439183 CDO1495_WHE03E09F ITEC CDO Oat cDNA ... 30 2.2
gb|CN815115.1|CN815115 HRO4506_A07_A14ZS5 Lib AA071E1X Aven... 30 2.2
gb|CN816390.1|CN816390 HRO4520_B09_D18ZS5 Lib AA071E1X Aven... 30 2.2
gb|CN818754.1|CN818754 HRO4455_C01_E01ZS5 Lib AA070E1X Aven... 30 2.2
gb|CN818795.1|CN818795 HRO4456_C02_E04ZS5 Lib AA070E1X Aven... 30 2.2
gb|CN820872.1|CN820872 HRO4420_H08_P16ZS5 Lib AA069E1X Aven... 30 2.2
gb|CN814670.1|CN814670 HRO4501_C03_E05ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN814820.1|CN814820 HRO4502_H01_O02ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN814833.1|CN814833 HRO4503_A02_B03ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN815251.1|CN815251 HRO4507_E12_J23ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN815424.1|CN815424 HRO4509_E06_I11ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN816086.1|CN816086 HRO4516_G09_N18ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN816811.1|CN816811 HRO4525_A11_A21ZS5 Lib AA071E1X Aven... 28 8.6
gb|CN817499.1|CN817499 HRO4458_A04_B08ZS5 Lib AA070E1X Aven... 28 8.6
gb|CN820484.1|CN820484 HRO4419_H05_P09ZS5 Lib AA069E1X Aven... 28 8.6
gb|CN820645.1|CN820645 HRO4415_G08_N15ZS5 Lib AA069E1X Aven... 28 8.6
gb|CN820848.1|CN820848 HRO4420_F01_L02ZS5 Lib AA069E1X Aven... 28 8.6
gb|AF234528.1|AF234528 Avena nuda actin 1 gene, complete cds 28 8.6
gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta... 28 8.6
>gb|CN815175.1|CN815175 HRO4506_F12_K24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F12_K24, mRNA sequence
Length = 708
Score = 32.2 bits (16), Expect = 0.55
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 493 aattgcatcgaaagct 508
||||||||||||||||
Sbjct: 344 aattgcatcgaaagct 359
>gb|BE439183.1|BE439183 CDO1495_WHE03E09F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1495_WHE03E09, mRNA sequence
Length = 404
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 288 atggtgggaggatat 302
|||||||||||||||
Sbjct: 272 atggtgggaggatat 258
>gb|CN815115.1|CN815115 HRO4506_A07_A14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_A07_A14, mRNA sequence
Length = 472
Score = 30.2 bits (15), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 447 tattttcgattctttcgcg 465
|||||||||||| ||||||
Sbjct: 306 tattttcgattccttcgcg 324
>gb|CN816390.1|CN816390 HRO4520_B09_D18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_B09_D18, mRNA sequence
Length = 856
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 560 agaagatattggata 574
|||||||||||||||
Sbjct: 408 agaagatattggata 422
>gb|CN818754.1|CN818754 HRO4455_C01_E01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_C01_E01, mRNA sequence
Length = 352
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 446 atattttcgattctt 460
|||||||||||||||
Sbjct: 247 atattttcgattctt 261
>gb|CN818795.1|CN818795 HRO4456_C02_E04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_C02_E04, mRNA sequence
Length = 724
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 446 atattttcgattctt 460
|||||||||||||||
Sbjct: 681 atattttcgattctt 695
>gb|CN820872.1|CN820872 HRO4420_H08_P16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_H08_P16, mRNA
sequence
Length = 498
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 446 atattttcgattctt 460
|||||||||||||||
Sbjct: 415 atattttcgattctt 429
>gb|CN814670.1|CN814670 HRO4501_C03_E05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_C03_E05, mRNA sequence
Length = 470
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 401 ggataatattgaca 414
||||||||||||||
Sbjct: 440 ggataatattgaca 427
>gb|CN814820.1|CN814820 HRO4502_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_H01_O02, mRNA sequence
Length = 494
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 aacttgccaagctg 234
||||||||||||||
Sbjct: 104 aacttgccaagctg 91
>gb|CN814833.1|CN814833 HRO4503_A02_B03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A02_B03, mRNA sequence
Length = 626
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 aacttgccaagctg 234
||||||||||||||
Sbjct: 437 aacttgccaagctg 450
>gb|CN815251.1|CN815251 HRO4507_E12_J23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_E12_J23, mRNA sequence
Length = 692
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 312 atcaaaacttcctt 325
||||||||||||||
Sbjct: 380 atcaaaacttcctt 367
>gb|CN815424.1|CN815424 HRO4509_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_E06_I11, mRNA sequence
Length = 693
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 atactcgatgaagc 41
||||||||||||||
Sbjct: 310 atactcgatgaagc 297
>gb|CN816086.1|CN816086 HRO4516_G09_N18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_G09_N18, mRNA sequence
Length = 698
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 249 gcagctccatcatc 262
||||||||||||||
Sbjct: 601 gcagctccatcatc 614
>gb|CN816811.1|CN816811 HRO4525_A11_A21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A11_A21, mRNA sequence
Length = 725
Score = 28.2 bits (14), Expect = 8.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 497 gcatcgaaagctgggatc 514
|||| |||||||||||||
Sbjct: 292 gcattgaaagctgggatc 275
>gb|CN817499.1|CN817499 HRO4458_A04_B08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A04_B08, mRNA sequence
Length = 599
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 344 tggagtgttttcta 357
||||||||||||||
Sbjct: 277 tggagtgttttcta 290
>gb|CN820484.1|CN820484 HRO4419_H05_P09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_H05_P09, mRNA
sequence
Length = 551
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 356 tatggatcttagga 369
||||||||||||||
Sbjct: 439 tatggatcttagga 452
>gb|CN820645.1|CN820645 HRO4415_G08_N15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G08_N15, mRNA
sequence
Length = 646
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 tggaacgctgcatg 208
||||||||||||||
Sbjct: 511 tggaacgctgcatg 498
>gb|CN820848.1|CN820848 HRO4420_F01_L02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F01_L02, mRNA
sequence
Length = 440
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 270 gctgaagatcctga 283
||||||||||||||
Sbjct: 177 gctgaagatcctga 190
>gb|AF234528.1|AF234528 Avena nuda actin 1 gene, complete cds
Length = 1796
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 272 tgaagatcctgaca 285
||||||||||||||
Sbjct: 1137 tgaagatcctgaca 1150
>gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta subunit precursor (P60b) mRNA,
complete cds
Length = 1923
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 tggaacgctgcatg 208
||||||||||||||
Sbjct: 1788 tggaacgctgcatg 1775
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1250
Number of Sequences: 8143
Number of extensions: 1250
Number of successful extensions: 327
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 21
length of query: 612
length of database: 4,702,463
effective HSP length: 16
effective length of query: 596
effective length of database: 4,572,175
effective search space: 2725016300
effective search space used: 2725016300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)