BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAM14e11.yg.2.1
         (197 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819961.1|CN819961  HRO4409_C01_E01ZS5 Lib AA069E1X Aven...    34   0.042
gb|CN815568.1|CN815568  HRO4513_B04_C07ZS5 Lib AA071E1X Aven...    32   0.17 

>gb|CN819961.1|CN819961 HRO4409_C01_E01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4409_C01_E01, mRNA
           sequence
          Length = 540

 Score = 34.2 bits (17), Expect = 0.042
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 115 tctcctccttggacatg 131
           |||||||||||||||||
Sbjct: 225 tctcctccttggacatg 209



>gb|CN815568.1|CN815568 HRO4513_B04_C07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4513_B04_C07, mRNA sequence
          Length = 512

 Score = 32.2 bits (16), Expect = 0.17
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 112 cgatctcctccttgga 127
           ||||||||||||||||
Sbjct: 76  cgatctcctccttgga 61



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 535
Number of Sequences: 8143
Number of extensions: 535
Number of successful extensions: 141
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 4,702,463
effective HSP length: 15
effective length of query: 182
effective length of database: 4,580,318
effective search space: 833617876
effective search space used: 833617876
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)