BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ1a04.yg.2.1
(386 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta... 48 6e-006
emb|X78433.1|ASLBDG A.sativa L. mRNA for beta-D-glucosidase 40 0.001
>gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta subunit precursor (P60b) mRNA,
complete cds
Length = 1923
Score = 48.1 bits (24), Expect = 6e-006
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||| | |||||| || ||||||||||||||||| ||||||
Sbjct: 549 agagaacggcataaagccatatattacgcttttccactgggacacccctcaa 600
>emb|X78433.1|ASLBDG A.sativa L. mRNA for beta-D-glucosidase
Length = 1898
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 cttttccactgggacacacctcaa 89
||||||||||||||||| ||||||
Sbjct: 571 cttttccactgggacacccctcaa 594
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 251
Number of Sequences: 8143
Number of extensions: 251
Number of successful extensions: 64
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 2
length of query: 386
length of database: 4,702,463
effective HSP length: 15
effective length of query: 371
effective length of database: 4,580,318
effective search space: 1699297978
effective search space used: 1699297978
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)