BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAH4a02.xg.2.1
         (526 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815070.1|CN815070  HRO4505_E07_I13ZS5 Lib AA071E1X Aven...   127   1e-029
gb|CN819475.1|CN819475  HRO4406_D10_G20ZS5 Lib AA069E1X Aven...    32   0.47 
gb|CN820070.1|CN820070  HRO4410_G05_M10ZS5 Lib AA069E1X Aven...    32   0.47 
gb|CN821232.1|CN821232  HRO4423_A03_B05ZS5 Lib AA069E1X Aven...    32   0.47 

>gb|CN815070.1|CN815070 HRO4505_E07_I13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4505_E07_I13, mRNA sequence
          Length = 356

 Score =  127 bits (64), Expect = 1e-029
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaacagcg 64
           ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 249 gaacactaatagctgctctagctgaagctgcatttcttattggattagaaagaaacaacg 308

                                                           
Query: 65  acgtggttgagatggcaagttgtgctccactccttgtaaacgacaatg 112
           || ||||||| ||||||||||| | ||||||| | ||||| |||||||
Sbjct: 309 acctggttgaaatggcaagttggggtccactcttcgtaaatgacaatg 356



>gb|CN819475.1|CN819475 HRO4406_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4406_D10_G20, mRNA
           sequence
          Length = 705

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 125 acccagatgctatagt 140
           ||||||||||||||||
Sbjct: 202 acccagatgctatagt 217



>gb|CN820070.1|CN820070 HRO4410_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4410_G05_M10, mRNA
           sequence
          Length = 721

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 125 acccagatgctatagt 140
           ||||||||||||||||
Sbjct: 248 acccagatgctatagt 263



>gb|CN821232.1|CN821232 HRO4423_A03_B05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_A03_B05, mRNA
           sequence
          Length = 697

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 125 acccagatgctatagt 140
           ||||||||||||||||
Sbjct: 250 acccagatgctatagt 265



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1287
Number of Sequences: 8143
Number of extensions: 1287
Number of successful extensions: 370
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 4
length of query: 526
length of database: 4,702,463
effective HSP length: 16
effective length of query: 510
effective length of database: 4,572,175
effective search space: 2331809250
effective search space used: 2331809250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)