BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF13b04.yg.2.1
         (370 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF118559.1|AF118559  Avena fatua puroindoline precursor, ...    38   0.005

>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
          Length = 571

 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  gcggccgcccgggcaggta 19
          |||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggta 23



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 897
Number of Sequences: 8143
Number of extensions: 897
Number of successful extensions: 257
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 2
length of query: 370
length of database: 4,702,463
effective HSP length: 15
effective length of query: 355
effective length of database: 4,580,318
effective search space: 1626012890
effective search space used: 1626012890
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)