BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= M73028.2.1
(1802 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 40 0.007
gb|CN815589.1|CN815589 HRO4513_D02_G03ZS5 Lib AA071E1X Aven... 34 0.41
gb|CN819919.1|CN819919 HRO4407_H03_P05ZS5 Lib AA069E1X Aven... 34 0.41
gb|CN821022.1|CN821022 HRO4422_F07_K14ZS5 Lib AA069E1X Aven... 34 0.41
emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (c... 34 0.41
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 40.1 bits (20), Expect = 0.007
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 459 tccggtgcggcaagagctgccggctccg 486
|||| ||||||||||||||||| |||||
Sbjct: 489 tccgctgcggcaagagctgccgcctccg 516
>gb|CN815589.1|CN815589 HRO4513_D02_G03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D02_G03, mRNA sequence
Length = 578
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 913 cagcagcagcggcagca 929
|||||||||||||||||
Sbjct: 265 cagcagcagcggcagca 249
>gb|CN819919.1|CN819919 HRO4407_H03_P05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_H03_P05, mRNA
sequence
Length = 780
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 936 cggccgaggaggagggg 952
|||||||||||||||||
Sbjct: 46 cggccgaggaggagggg 30
>gb|CN821022.1|CN821022 HRO4422_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_F07_K14, mRNA
sequence
Length = 533
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 541 agaagacatcatcatca 557
|||||||||||||||||
Sbjct: 104 agaagacatcatcatca 120
>emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (clone ABF2)
Length = 1283
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 849 cggccgcggcggcgtcg 865
|||||||||||||||||
Sbjct: 1009 cggccgcggcggcgtcg 1025
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3519
Number of Sequences: 8143
Number of extensions: 3519
Number of successful extensions: 977
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 8
length of query: 1802
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1785
effective length of database: 4,564,032
effective search space: 8146797120
effective search space used: 8146797120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)