BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= L46398.2.1
         (1263 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY597512.1|  Avena sativa leafy hull sterile 1 (LHS1) mRN...   155   1e-037
gb|CN819912.1|CN819912  HRO4407_G05_N09ZS5 Lib AA069E1X Aven...    36   0.073
gb|CN820167.1|CN820167  HRO4411_H09_P17ZS5 Lib AA069E1X Aven...    36   0.073
gb|CN820937.1|CN820937  HRO4421_F10_K19ZS5 Lib AA069E1X Aven...    36   0.073
gb|CN821202.1|CN821202  HRO4428_F05_L10ZS5 Lib AA069E1X Aven...    36   0.073
gb|CN818146.1|CN818146  HRO4471_E03_I05ZS5 Lib AA070E1X Aven...    34   0.29 

>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
          Length = 904

 Score =  155 bits (78), Expect = 1e-037
 Identities = 114/126 (90%)
 Strand = Plus / Plus

                                                                       
Query: 232 atcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcctgctcaag 291
           |||||||||||||| | ||| ||||| |||||| |||||||||| ||||| |||||||||
Sbjct: 1   atcgagaacaagataagccggcaggtgaccttcgccaagcgccggaacgggctgctcaag 60

                                                                       
Query: 292 aaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctccggc 351
           ||||| |||||||||||  |||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 61  aaggcgtacgagctctcgctgctctgcgacgccgaggacgccctcatcatcttctccggc 120

                 
Query: 352 cgcggc 357
           ||||||
Sbjct: 121 cgcggc 126



>gb|CN819912.1|CN819912 HRO4407_G05_N09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4407_G05_N09, mRNA
            sequence
          Length = 751

 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1226 tgcatagaattcaaagtt 1243
            ||||||||||||||||||
Sbjct: 570  tgcatagaattcaaagtt 587



>gb|CN820167.1|CN820167 HRO4411_H09_P17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4411_H09_P17, mRNA
            sequence
          Length = 306

 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1226 tgcatagaattcaaagtt 1243
            ||||||||||||||||||
Sbjct: 166  tgcatagaattcaaagtt 183



>gb|CN820937.1|CN820937 HRO4421_F10_K19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4421_F10_K19, mRNA
            sequence
          Length = 740

 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1226 tgcatagaattcaaagtt 1243
            ||||||||||||||||||
Sbjct: 442  tgcatagaattcaaagtt 459



>gb|CN821202.1|CN821202 HRO4428_F05_L10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4428_F05_L10, mRNA
            sequence
          Length = 585

 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1226 tgcatagaattcaaagtt 1243
            ||||||||||||||||||
Sbjct: 271  tgcatagaattcaaagtt 288



>gb|CN818146.1|CN818146 HRO4471_E03_I05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4471_E03_I05, mRNA sequence
          Length = 545

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 333 gctcatcatcttctccg 349
           |||||||||||||||||
Sbjct: 6   gctcatcatcttctccg 22



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2962
Number of Sequences: 8143
Number of extensions: 2962
Number of successful extensions: 777
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 8
length of query: 1263
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1247
effective length of database: 4,572,175
effective search space: 5701502225
effective search space used: 5701502225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)