BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK780254.1|CK780254 umn214 UMN cDNA from oat Avena sativ... 40 0.005
gb|M83381.1|ASTAVEC A.sativa avenin mRNA, complete cds 40 0.005
gb|CN816802.1|CN816802 HRO4525_A01_A01ZS5 Lib AA071E1X Aven... 38 0.018
gb|M38721.1|ASTAVEA A.sativa avenin mRNA, complete cds 38 0.018
gb|CN817293.1|CN817293 HRO4464_H01_O02ZS5 Lib AA070E1X Aven... 34 0.28
gb|CN817829.1|CN817829 HRO4453_E10_J19ZS5 Lib AA070E1X Aven... 34 0.28
gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Aven... 34 0.28
gb|CN821560.1|CN821560 HRO4426_G01_M02ZS5 Lib AA069E1X Aven... 34 0.28
gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks o... 34 0.28
emb|AM071409.1| Avena sativa partial mRNA for CBF-like tran... 34 0.28
>gb|CK780254.1|CK780254 umn214 UMN cDNA from oat Avena sativa cDNA clone JMT4_E11 5', mRNA
sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 209 cagcagcagcaacaacaaca 228
>gb|M83381.1|ASTAVEC A.sativa avenin mRNA, complete cds
Length = 875
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 423 cagcagcagcaacaacaaca 442
>gb|CN816802.1|CN816802 HRO4525_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A01_A01, mRNA sequence
Length = 361
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1037 gggccacaaccttgtcgtggacggcgg 1063
|||||||||||| ||||| ||||||||
Sbjct: 9 gggccacaacctcgtcgtcgacggcgg 35
>gb|M38721.1|ASTAVEA A.sativa avenin mRNA, complete cds
Length = 725
Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaac 78
|||||||||||||||||||
Sbjct: 355 cagcagcagcaacaacaac 373
>gb|CN817293.1|CN817293 HRO4464_H01_O02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H01_O02, mRNA sequence
Length = 455
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 874 acctcgacctcgacctc 890
|||||||||||||||||
Sbjct: 55 acctcgacctcgacctc 71
>gb|CN817829.1|CN817829 HRO4453_E10_J19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_E10_J19, mRNA sequence
Length = 420
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 874 acctcgacctcgacctc 890
|||||||||||||||||
Sbjct: 35 acctcgacctcgacctc 51
>gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E10_J20, mRNA
sequence
Length = 776
Score = 34.2 bits (17), Expect = 0.28
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||| ||||||
Sbjct: 478 cagcagcagcaacagcaacat 498
>gb|CN821560.1|CN821560 HRO4426_G01_M02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_G01_M02, mRNA
sequence
Length = 675
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaaca 76
|||||||||||||||||
Sbjct: 313 cagcagcagcaacaaca 329
>gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks old, post-germination Avena
sativa cDNA clone ASCID1-1_016_f08, mRNA sequence
Length = 592
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 514 gccagacgcgcgccgcc 530
|||||||||||||||||
Sbjct: 140 gccagacgcgcgccgcc 124
>emb|AM071409.1| Avena sativa partial mRNA for CBF-like transcription factor (cbf4
gene)
Length = 848
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 428 cgacgtccggcgcgccg 444
|||||||||||||||||
Sbjct: 449 cgacgtccggcgcgccg 465
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3293
Number of Sequences: 8143
Number of extensions: 3293
Number of successful extensions: 925
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 29
length of query: 1220
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1204
effective length of database: 4,572,175
effective search space: 5504898700
effective search space used: 5504898700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)