BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AF332176.2.1
         (912 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820496.1|CN820496  HRO4413_A07_A13ZS5 Lib AA069E1X Aven...    58   1e-008
gb|CN816916.1|CN816916  HRO4526_C01_E02ZS5 Lib AA071E1X Aven...    44   2e-004
gb|CN820739.1|CN820739  HRO4414_B03_C06ZS5 Lib AA069E1X Aven...    44   2e-004
gb|CN821332.1|CN821332  HRO4424_B04_D08ZS5 Lib AA069E1X Aven...    44   2e-004
gb|CN814954.1|CN814954  HRO4504_C08_F16ZS5 Lib AA071E1X Aven...    40   0.003
gb|CN815724.1|CN815724  HRO4514_G12_M24ZS5 Lib AA071E1X Aven...    38   0.013
gb|CN817023.1|CN817023  HRO4527_D07_H13ZS5 Lib AA071E1X Aven...    36   0.053
gb|CN817207.1|CN817207  HRO4464_C02_E04ZS5 Lib AA070E1X Aven...    36   0.053
gb|CN818039.1|CN818039  HRO4472_D02_G04ZS5 Lib AA070E1X Aven...    36   0.053
gb|CN820274.1|CN820274  HRO4417_E07_I13ZS5 Lib AA069E1X Aven...    36   0.053
gb|CN815573.1|CN815573  HRO4513_B09_C17ZS5 Lib AA071E1X Aven...    34   0.21 
gb|CN821410.1|CN821410  HRO4425_A03_A05ZS5 Lib AA069E1X Aven...    34   0.21 
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
           sequence
          Length = 642

 Score = 58.0 bits (29), Expect = 1e-008
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 473 tgggagcccatgcgcgagtcctggggctccatatggaggatggac 517
           |||| ||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 82  tgggcgccgatgcgcgagtcctgggggtccatctggaggatggac 126

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 374 tacctggcggtgctggtggagtacgag 400
           ||||||||||||||| | |||||||||
Sbjct: 1   tacctggcggtgctgatcgagtacgag 27
>gb|CN816916.1|CN816916 HRO4526_C01_E02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4526_C01_E02, mRNA sequence
          Length = 561

 Score = 44.1 bits (22), Expect = 2e-004
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 820 ctacctagctagctagctagct 841
           ||||||||||||||||||||||
Sbjct: 166 ctacctagctagctagctagct 187
>gb|CN820739.1|CN820739 HRO4414_B03_C06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_B03_C06, mRNA
           sequence
          Length = 704

 Score = 44.1 bits (22), Expect = 2e-004
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 820 ctacctagctagctagctagct 841
           ||||||||||||||||||||||
Sbjct: 525 ctacctagctagctagctagct 504
>gb|CN821332.1|CN821332 HRO4424_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4424_B04_D08, mRNA
           sequence
          Length = 385

 Score = 44.1 bits (22), Expect = 2e-004
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 820 ctacctagctagctagctagct 841
           ||||||||||||||||||||||
Sbjct: 185 ctacctagctagctagctagct 164
>gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4504_C08_F16, mRNA sequence
          Length = 443

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgct 579
           |||||| |||||| ||| ||||||||||||||
Sbjct: 16  ctgcgcatcaccagcgactccggcaagacgct 47
>gb|CN815724.1|CN815724 HRO4514_G12_M24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4514_G12_M24, mRNA sequence
          Length = 702

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 822 acctagctagctagctagc 840
           |||||||||||||||||||
Sbjct: 381 acctagctagctagctagc 363
>gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_D07_H13, mRNA sequence
          Length = 651

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 823 cctagctagctagctagc 840
           ||||||||||||||||||
Sbjct: 557 cctagctagctagctagc 574
>gb|CN817207.1|CN817207 HRO4464_C02_E04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4464_C02_E04, mRNA sequence
          Length = 329

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 820 ctacctagctagctagct 837
           ||||||||||||||||||
Sbjct: 83  ctacctagctagctagct 66
>gb|CN818039.1|CN818039 HRO4472_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4472_D02_G04, mRNA sequence
          Length = 445

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 824 ctagctagctagctagct 841
           ||||||||||||||||||
Sbjct: 291 ctagctagctagctagct 308

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 825 tagctagctagctagct 841
           |||||||||||||||||
Sbjct: 309 tagctagctagctagct 293

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 824 ctagctagctagctagc 840
           |||||||||||||||||
Sbjct: 306 ctagctagctagctagc 290
>gb|CN820274.1|CN820274 HRO4417_E07_I13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4417_E07_I13, mRNA
           sequence
          Length = 429

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 824 ctagctagctagctagct 841
           ||||||||||||||||||
Sbjct: 276 ctagctagctagctagct 293

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 825 tagctagctagctagct 841
           |||||||||||||||||
Sbjct: 294 tagctagctagctagct 278

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 824 ctagctagctagctagc 840
           |||||||||||||||||
Sbjct: 291 ctagctagctagctagc 275
>gb|CN815573.1|CN815573 HRO4513_B09_C17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4513_B09_C17, mRNA sequence
          Length = 775

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 626 tacagctccatcgtcca 642
           |||||||||||||||||
Sbjct: 647 tacagctccatcgtcca 631
>gb|CN821410.1|CN821410 HRO4425_A03_A05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4425_A03_A05, mRNA
           sequence
          Length = 687

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 674 cgtacatatagatatat 690
           |||||||||||||||||
Sbjct: 394 cgtacatatagatatat 378
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2336
Number of Sequences: 8143
Number of extensions: 2336
Number of successful extensions: 909
Number of sequences better than  0.5: 12
Number of HSP's better than  0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 42
length of query: 912
length of database: 4,702,463
effective HSP length: 16
effective length of query: 896
effective length of database: 4,572,175
effective search space: 4096668800
effective search space used: 4096668800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)