BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 58 1e-008
gb|CN816916.1|CN816916 HRO4526_C01_E02ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN820739.1|CN820739 HRO4414_B03_C06ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN821332.1|CN821332 HRO4424_B04_D08ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Aven... 40 0.003
gb|CN815724.1|CN815724 HRO4514_G12_M24ZS5 Lib AA071E1X Aven... 38 0.013
gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Aven... 36 0.053
gb|CN817207.1|CN817207 HRO4464_C02_E04ZS5 Lib AA070E1X Aven... 36 0.053
gb|CN818039.1|CN818039 HRO4472_D02_G04ZS5 Lib AA070E1X Aven... 36 0.053
gb|CN820274.1|CN820274 HRO4417_E07_I13ZS5 Lib AA069E1X Aven... 36 0.053
gb|CN815573.1|CN815573 HRO4513_B09_C17ZS5 Lib AA071E1X Aven... 34 0.21
gb|CN821410.1|CN821410 HRO4425_A03_A05ZS5 Lib AA069E1X Aven... 34 0.21
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 58.0 bits (29), Expect = 1e-008
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 473 tgggagcccatgcgcgagtcctggggctccatatggaggatggac 517
|||| ||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 82 tgggcgccgatgcgcgagtcctgggggtccatctggaggatggac 126
Score = 38.2 bits (19), Expect = 0.013
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 374 tacctggcggtgctggtggagtacgag 400
||||||||||||||| | |||||||||
Sbjct: 1 tacctggcggtgctgatcgagtacgag 27
>gb|CN816916.1|CN816916 HRO4526_C01_E02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_C01_E02, mRNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 820 ctacctagctagctagctagct 841
||||||||||||||||||||||
Sbjct: 166 ctacctagctagctagctagct 187
>gb|CN820739.1|CN820739 HRO4414_B03_C06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B03_C06, mRNA
sequence
Length = 704
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 820 ctacctagctagctagctagct 841
||||||||||||||||||||||
Sbjct: 525 ctacctagctagctagctagct 504
>gb|CN821332.1|CN821332 HRO4424_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_B04_D08, mRNA
sequence
Length = 385
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 820 ctacctagctagctagctagct 841
||||||||||||||||||||||
Sbjct: 185 ctacctagctagctagctagct 164
>gb|CN814954.1|CN814954 HRO4504_C08_F16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C08_F16, mRNA sequence
Length = 443
Score = 40.1 bits (20), Expect = 0.003
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgct 579
|||||| |||||| ||| ||||||||||||||
Sbjct: 16 ctgcgcatcaccagcgactccggcaagacgct 47
>gb|CN815724.1|CN815724 HRO4514_G12_M24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G12_M24, mRNA sequence
Length = 702
Score = 38.2 bits (19), Expect = 0.013
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 822 acctagctagctagctagc 840
|||||||||||||||||||
Sbjct: 381 acctagctagctagctagc 363
>gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D07_H13, mRNA sequence
Length = 651
Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 823 cctagctagctagctagc 840
||||||||||||||||||
Sbjct: 557 cctagctagctagctagc 574
>gb|CN817207.1|CN817207 HRO4464_C02_E04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_C02_E04, mRNA sequence
Length = 329
Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 820 ctacctagctagctagct 837
||||||||||||||||||
Sbjct: 83 ctacctagctagctagct 66
>gb|CN818039.1|CN818039 HRO4472_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_D02_G04, mRNA sequence
Length = 445
Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 824 ctagctagctagctagct 841
||||||||||||||||||
Sbjct: 291 ctagctagctagctagct 308
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 825 tagctagctagctagct 841
|||||||||||||||||
Sbjct: 309 tagctagctagctagct 293
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 824 ctagctagctagctagc 840
|||||||||||||||||
Sbjct: 306 ctagctagctagctagc 290
>gb|CN820274.1|CN820274 HRO4417_E07_I13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_E07_I13, mRNA
sequence
Length = 429
Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 824 ctagctagctagctagct 841
||||||||||||||||||
Sbjct: 276 ctagctagctagctagct 293
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 825 tagctagctagctagct 841
|||||||||||||||||
Sbjct: 294 tagctagctagctagct 278
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 824 ctagctagctagctagc 840
|||||||||||||||||
Sbjct: 291 ctagctagctagctagc 275
>gb|CN815573.1|CN815573 HRO4513_B09_C17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B09_C17, mRNA sequence
Length = 775
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 626 tacagctccatcgtcca 642
|||||||||||||||||
Sbjct: 647 tacagctccatcgtcca 631
>gb|CN821410.1|CN821410 HRO4425_A03_A05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_A03_A05, mRNA
sequence
Length = 687
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 674 cgtacatatagatatat 690
|||||||||||||||||
Sbjct: 394 cgtacatatagatatat 378
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2336
Number of Sequences: 8143
Number of extensions: 2336
Number of successful extensions: 909
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 42
length of query: 912
length of database: 4,702,463
effective HSP length: 16
effective length of query: 896
effective length of database: 4,572,175
effective search space: 4096668800
effective search space used: 4096668800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)