BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818337.1|CN818337 HRO4469_G06_N11ZS5 Lib AA070E1X Aven... 40 0.005
gb|CN818445.1|CN818445 HRO4453_C05_F09ZS5 Lib AA070E1X Aven... 40 0.005
gb|CN820409.1|CN820409 HRO4419_A06_B11ZS5 Lib AA069E1X Aven... 40 0.005
>gb|CN818337.1|CN818337 HRO4469_G06_N11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_G06_N11, mRNA sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 aggagaaggagaaggagaag 210
||||||||||||||||||||
Sbjct: 66 aggagaaggagaaggagaag 85
>gb|CN818445.1|CN818445 HRO4453_C05_F09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C05_F09, mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 aggagaaggagaaggagaag 210
||||||||||||||||||||
Sbjct: 73 aggagaaggagaaggagaag 92
>gb|CN820409.1|CN820409 HRO4419_A06_B11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_A06_B11, mRNA
sequence
Length = 693
Score = 40.1 bits (20), Expect = 0.005
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 295 acaaggagaacgagaaggagaagc 318
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2758
Number of Sequences: 8143
Number of extensions: 2758
Number of successful extensions: 768
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 5
length of query: 1318
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1302
effective length of database: 4,572,175
effective search space: 5952971850
effective search space used: 5952971850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)