BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021175.2.1
(1225 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815479.1|CN815479 HRO4512_B03_D06ZS5 Lib AA071E1X Aven... 34 0.28
gb|CN815936.1|CN815936 HRO4515_B03_D05ZS5 Lib AA071E1X Aven... 34 0.28
gb|CN817314.1|CN817314 HRO4465_A03_B05ZS5 Lib AA070E1X Aven... 34 0.28
gb|CN818025.1|CN818025 HRO4472_E10_I20ZS5 Lib AA070E1X Aven... 34 0.28
gb|CN818630.1|CN818630 HRO4467_D04_G07ZS5 Lib AA070E1X Aven... 34 0.28
emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (c... 34 0.28
emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll ... 34 0.28
>gb|CN815479.1|CN815479 HRO4512_B03_D06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_B03_D06, mRNA sequence
Length = 490
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcg 111
|||||||||||||||||
Sbjct: 95 tggcggcggcggcggcg 111
>gb|CN815936.1|CN815936 HRO4515_B03_D05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B03_D05, mRNA sequence
Length = 798
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 95 tggcggcggcggcggcg 111
|||||||||||||||||
Sbjct: 42 tggcggcggcggcggcg 26
>gb|CN817314.1|CN817314 HRO4465_A03_B05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_A03_B05, mRNA sequence
Length = 361
Score = 34.2 bits (17), Expect = 0.28
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 528 cgccgcccagaggacgcccag 548
||||||| |||||||||||||
Sbjct: 167 cgccgccgagaggacgcccag 187
>gb|CN818025.1|CN818025 HRO4472_E10_I20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_E10_I20, mRNA sequence
Length = 535
Score = 34.2 bits (17), Expect = 0.28
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 528 cgccgcccagaggacgcccag 548
||||||| |||||||||||||
Sbjct: 243 cgccgccgagaggacgcccag 263
>gb|CN818630.1|CN818630 HRO4467_D04_G07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_D04_G07, mRNA sequence
Length = 339
Score = 34.2 bits (17), Expect = 0.28
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 528 cgccgcccagaggacgcccag 548
||||||| |||||||||||||
Sbjct: 148 cgccgccgagaggacgcccag 168
>emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (clone ABF1)
Length = 1459
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcg 111
|||||||||||||||||
Sbjct: 359 tggcggcggcggcggcg 375
>emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synthase (chlG gene)
Length = 1428
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 95 tggcggcggcggcggcg 111
|||||||||||||||||
Sbjct: 37 tggcggcggcggcggcg 21
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3358
Number of Sequences: 8143
Number of extensions: 3358
Number of successful extensions: 1103
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 12
length of query: 1225
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1209
effective length of database: 4,572,175
effective search space: 5527759575
effective search space used: 5527759575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)