BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 9196052.2.1
         (771 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819919.1|CN819919  HRO4407_H03_P05ZS5 Lib AA069E1X Aven...    34   0.18 
gb|CN820331.1|CN820331  HRO4418_B08_C16ZS5 Lib AA069E1X Aven...    32   0.69 
gb|CN817805.1|CN817805  HRO4461_A06_B11ZS5 Lib AA070E1X Aven...    30   2.7  
gb|CN818147.1|CN818147  HRO4471_E04_I07ZS5 Lib AA070E1X Aven...    30   2.7  
gb|CN821576.1|CN821576  HRO4426_H05_O10ZS5 Lib AA069E1X Aven...    30   2.7  

>gb|CN819919.1|CN819919 HRO4407_H03_P05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4407_H03_P05, mRNA
           sequence
          Length = 780

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                    
Query: 383 tctggcgatggcgagaggccggccg 407
           |||||||| || |||||||||||||
Sbjct: 65  tctggcgacggagagaggccggccg 41



>gb|CN820331.1|CN820331 HRO4418_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4418_B08_C16, mRNA
           sequence
          Length = 768

 Score = 32.2 bits (16), Expect = 0.69
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 604 cttgatgtagctgcag 619
           ||||||||||||||||
Sbjct: 246 cttgatgtagctgcag 261



>gb|CN817805.1|CN817805 HRO4461_A06_B11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4461_A06_B11, mRNA sequence
          Length = 624

 Score = 30.2 bits (15), Expect = 2.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 177 gctactaggagtata 191
           |||||||||||||||
Sbjct: 415 gctactaggagtata 429



>gb|CN818147.1|CN818147 HRO4471_E04_I07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4471_E04_I07, mRNA sequence
          Length = 357

 Score = 30.2 bits (15), Expect = 2.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 467 ggccggccggccgga 481
           |||||||||||||||
Sbjct: 160 ggccggccggccgga 174



>gb|CN821576.1|CN821576 HRO4426_H05_O10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4426_H05_O10, mRNA
           sequence
          Length = 506

 Score = 30.2 bits (15), Expect = 2.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 651 ggctgccgccacggc 665
           |||||||||||||||
Sbjct: 203 ggctgccgccacggc 217



  Database: Avena_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:37 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1837
Number of Sequences: 8143
Number of extensions: 1837
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 8
length of query: 771
length of database: 4,702,463
effective HSP length: 16
effective length of query: 755
effective length of database: 4,572,175
effective search space: 3451992125
effective search space used: 3451992125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)